summaryrefslogtreecommitdiff
path: root/biology (follow)
Commit message (Collapse)AuthorAgeFilesLines
* Add SIZE data.Akinori MUSHA2004-03-221-0/+1
| | | | | | | Submitted by: trevor Notes: svn path=/head/; revision=104943
* Do not hardcord PICFLAGMaho Nakata2004-03-201-7/+1
| | | | | | | Submitted by: ru Notes: svn path=/head/; revision=104698
* Backout previous change of PICFLAG, sinceMaho Nakata2004-03-191-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | behaviour of -fPIC and -fpic are different. Here is the comment form obrien: -- "-fpic" is a [minor?] optimization for machines that can handle it: -fpic Generate position-independent code (PIC) suitable for use in a shared library, if supported for the target machine. Such code accesses all constant addresses through a global offset table (GOT). The dynamic loader resolves the GOT entries when the program starts (the dynamic loader is not part of GCC; it is part of the operating system). If the GOT size for the linked executable exceeds a machine-specific maximum size, you get an error message from the linker indicating that -fpic does not work; in that case, recompile with -fPIC instead. (These maximums are 16k on the m88k, 8k on the SPARC, and 32k on the m68k and RS/6000. The 386 has no such limit.) -fPIC If supported for the target machine, emit position-independent code, suitable for dynamic linking and avoiding any limit on the size of the global offset table. This option makes a difference on the m68k, m88k, and the SPARC. Thanks to: obrien Notes: svn path=/head/; revision=104581
* -fPIC is appropreate on all architectures.Maho Nakata2004-03-181-6/+0
| | | | | | | Submitted by: kris Notes: svn path=/head/; revision=104554
* Add size data, approved by maintainers.Trevor Johnson2004-03-181-0/+1
| | | | Notes: svn path=/head/; revision=104520
* 1) Silent version up without changing the version numberMaho Nakata2004-03-183-6/+6
| | | | | | | | | | | very minor change in README 2) change WWW: section at pkg-descr 3) SIZEify Submitted by: kris via bento Notes: svn path=/head/; revision=104387
* Add size data.Trevor Johnson2004-03-181-0/+1
| | | | | | | Approved by: maintainers Notes: svn path=/head/; revision=104361
* SIZEify.Trevor Johnson2004-03-172-0/+2
| | | | Notes: svn path=/head/; revision=104313
* 1) update to 0.9.3Maho Nakata2004-03-175-11/+44
| | | | | | | | | 2) honor PREFIX & LOCALBASE 3) SIZEify 4) possible fix for amd64 and ia64 Notes: svn path=/head/; revision=104273
* Whoa there, boy, that's a mighty big commit y'all have there...Ade Lovett2004-03-141-1/+1
| | | | | | | | | | | | | | | | | | Begin autotools sanitization sequence by requiring ports to explicitly specify which version of {libtool,autoconf,automake} they need, erasing the concept of a "system default". For ports-in-waiting: USE_LIBTOOL=YES -> USE_LIBTOOL_VER=13 USE_AUTOCONF=YES -> USE_AUTOCONF_VER=213 USE_AUTOMAKE=YES -> USE_AUTOMAKE_VER=14 Ports attempting to use the old style system after June 1st 2004 will be sorely disappointed. Notes: svn path=/head/; revision=103963
* - Update to version 2003.09.21Kirill Ponomarev2004-03-124-15/+9
| | | | | | | | PR: ports/64160 Submitted by: Liam J. Foy <liamfoy@sepulcrum.org> Notes: svn path=/head/; revision=103782
* Insert "-l" into PATCH_ARGS, to cause the "patch" command to ignoreTrevor Johnson2004-03-091-0/+1
| | | | | | | | carriage-return characters in povchem.c which otherwise cause patch-ab to fail to apply. Notes: svn path=/head/; revision=103361
* Add MD5 of 2004-01-06 version of povchem.c. Its contents areTrevor Johnson2004-03-091-1/+1
| | | | | | | | identical to the 1999-08-22 version, except that the new file has a carriage return character added at the end of each line, DOS-style. Notes: svn path=/head/; revision=103360
* Unmark as broken for 4.x; instead, mark as ignore for perl < 5.6.Mark Linimon2004-03-081-2/+2
| | | | Notes: svn path=/head/; revision=103263
* BROKEN on amd64 and ia64: Does not compile (missing -fPIC)Kris Kennaway2004-03-071-1/+7
| | | | Notes: svn path=/head/; revision=103197
* Maintainer reports being unable to look after this port any longer.Mark Linimon2004-03-071-1/+1
| | | | | | | Thanks for your efforts in the past. Notes: svn path=/head/; revision=103158
* - Update to version 0.4Kirill Ponomarev2004-02-282-3/+3
| | | | | | | | PR: ports/63478 Submitted by: maintainer Notes: svn path=/head/; revision=102362
* - Fix MASTER_SITESKirill Ponomarev2004-02-271-1/+1
| | | | | | | | PR: ports/63469 Submitted by: maintainer Notes: svn path=/head/; revision=102318
* Update to 20040226 releaseMario Sergio Fujikawa Ferreira2004-02-273-3/+10
| | | | Notes: svn path=/head/; revision=102244
* BROKEN on alpha: Does not compileKris Kennaway2004-02-231-1/+7
| | | | Notes: svn path=/head/; revision=101807
* BROKEN on alpha 5.x: does not compileKris Kennaway2004-02-231-1/+7
| | | | Notes: svn path=/head/; revision=101805
* BROKEN: Checksum mismatchKris Kennaway2004-02-221-0/+2
| | | | Notes: svn path=/head/; revision=101636
* BROKEN on 4.x: Configure failsKris Kennaway2004-02-221-1/+7
| | | | Notes: svn path=/head/; revision=101631
* BROKEN: Does not fetchKris Kennaway2004-02-211-0/+2
| | | | Notes: svn path=/head/; revision=101606
* BROKEN: Checksum mismatchKris Kennaway2004-02-211-0/+2
| | | | Notes: svn path=/head/; revision=101589
* Upgrade to 1.23.Dag-Erling Smørgrav2004-02-096-1001/+1125
| | | | | | | Approved by: maintainer timeout Notes: svn path=/head/; revision=100524
* USE_SIZEifyMario Sergio Fujikawa Ferreira2004-02-082-0/+2
| | | | Notes: svn path=/head/; revision=100321
* Correct whitespace in COMMENTKris Kennaway2004-02-071-1/+1
| | | | Notes: svn path=/head/; revision=100207
* Use PLIST_FILES (bento-tested, marcus-reviewed).Trevor Johnson2004-02-0610-5/+5
| | | | Notes: svn path=/head/; revision=100139
* Use PLIST_FILES.Trevor Johnson2004-02-052-1/+1
| | | | | | | Reviewed by: marcus Notes: svn path=/head/; revision=100076
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.Joe Marcus Clarke2004-02-0417-5/+17
| | | | | | | (Part 2) Notes: svn path=/head/; revision=99920
* - Fix build on AMD64Kirill Ponomarev2004-02-012-2/+41
| | | | | | | - Use DOCSDIR Notes: svn path=/head/; revision=99742
* - Update to 3.6.bPav Lucistnik2004-01-312-4/+3
| | | | | | | | PR: ports/62142 Submitted by: David A. Bader <dbader@ece.unm.edu> (maintainer) Notes: svn path=/head/; revision=99626
* - Update to version 2003.11.25Kirill Ponomarev2004-01-292-2/+2
| | | | Notes: svn path=/head/; revision=99380
* Add SIZE.Trevor Johnson2004-01-279-0/+11
| | | | Notes: svn path=/head/; revision=99295
* Yet another C++ fix.Christian Weisgerber2004-01-251-1/+9
| | | | | | | Reported by: kris (bento) Notes: svn path=/head/; revision=99118
* Use the CPIO macro defined in bsd.port.mk.Trevor Johnson2004-01-221-1/+1
| | | | Notes: svn path=/head/; revision=98793
* Major update from 0.7.2 to 1.4 by new maintainer. This is almost a completeMark Linimon2004-01-216-405/+1689
| | | | | | | | | | | | | | | | | | | | | | | rework of the port. See the page http://news.open-bio.org/archives/cat_bioperl.html for the changes between 1.2 and 1.4. The older changes are in the CVS tree. From the new maintainer: Note that this new port just handles the installation of bioperl and not of additional extra stuff (bioperl-gui, bioperl-corba-server, bioperl-corba-client). This is unlike the behaviour of the current port. The extra stuff, though still functional, had very little adoption among users, and does not appear to be currently supported/maintained. PR: ports/47303 (and subsequent) Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer) Notes: svn path=/head/; revision=98688
* silent updates of archives:Maho Nakata2003-12-283-4/+8
| | | | | | | | | | | | a) program: Draw the hydrophobicity function F5 b) documentation: add very minor description not related FreeBSD. 1) bump portrevision 2) several clean ups for Makefile Notes: svn path=/head/; revision=96734
* - Fix MASTER_SITESKirill Ponomarev2003-12-201-1/+1
| | | | | | | | PR: 60417 Submitted by: maintainer Notes: svn path=/head/; revision=96264
* Mark as broken on 5.x due to the usual gcc terminating-character hassles.Mark Linimon2003-12-191-1/+7
| | | | | | | Notified mainatainer. Notes: svn path=/head/; revision=96196
* - Update to last snapshotPav Lucistnik2003-12-072-9/+6
| | | | | | | | PR: ports/58511 (based on) Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer) Notes: svn path=/head/; revision=95211
* - Update checksum again, seems author removes .ps version of documentationPav Lucistnik2003-11-214-467/+31
| | | | | | | | | | from tarball - Unmark broken, it builds for me just fine Approved by: adamw (mentor) Notes: svn path=/head/; revision=94673
* Define USE_PERL5_BUILD, not erroneous USE_PERL.Trevor Johnson2003-11-202-2/+2
| | | | | | | Submitted by: Oliver Eikemeier Notes: svn path=/head/; revision=94477
* Define USE_PERL to make Perl available for (mostly deprecated)Trevor Johnson2003-11-202-0/+2
| | | | | | | "perl -pi -e" construction. Notes: svn path=/head/; revision=94465
* - Unbreak on 5.xPav Lucistnik2003-11-203-7/+54
| | | | | | | Approved by: adamw (mentor) Notes: svn path=/head/; revision=94444
* - Update to new version 2003.11.17Kirill Ponomarev2003-11-176-66/+17
| | | | | | | - Unbreak this port Notes: svn path=/head/; revision=94176
* unPERLify by using REINPLACE_CMD and SED where appropriate.Joe Marcus Clarke2003-11-152-3/+1
| | | | | | | | PR: 47654 Submitted by: Simon 'portlint' Schubert <corecode@corecode.ath.cx> Notes: svn path=/head/; revision=94047
* Switch to wxgtk2.Max Khon2003-11-141-1/+2
| | | | Notes: svn path=/head/; revision=93942
* Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.Trevor Johnson2003-11-133-3/+3
| | | | Notes: svn path=/head/; revision=93890