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* Update to emboss 1.1.0, fixing some style bugs too.Neil Blakey-Milner2000-08-125-6/+321
| | | | | | | | PR: ports/20519 Submitted by: Johann Visagie <johann@egenetics.com> (maintainer) Notes: svn path=/head/; revision=31577
* Upgrade to 0.90.d02.Will Andrews2000-08-052-3/+3
| | | | | | | | PR: 20383 Submitted by: maintainer Notes: svn path=/head/; revision=31328
* Fix MASTER_SITESChris D. Faulhaber2000-08-011-1/+1
| | | | | | | | PR: 20120 Submitted by: Maintainer Notes: svn path=/head/; revision=31219
* Add emboss, the European Molecular Biology Open Software SuiteNeil Blakey-Milner2000-07-316-0/+700
| | | | | | | | PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31178
* Add py-biopython, is a collection of Python packages and modules createdNeil Blakey-Milner2000-07-316-0/+166
| | | | | | | | | | | by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31163
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsNeil Blakey-Milner2000-07-287-0/+259
| | | | | | | | PR: ports/20252 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31084
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemNeil Blakey-Milner2000-07-289-0/+177
| | | | | | | | PR: ports/20223 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31083
* Add sim4, an implementation of the sim4 algorithm for aligning expressedNeil Blakey-Milner2000-07-277-0/+48
| | | | | | | | | | DNA with genomic sequences PR: ports/20219 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=31064
* Add xdrawchem 0.82 - a program for drawing moleculesAlexander Langer2000-07-197-0/+65
| | | | Notes: svn path=/head/; revision=30857
* Activating the chemeq, clustalw, paml, and phylip ports.Steve Price2000-07-101-0/+4
| | | | Notes: svn path=/head/; revision=30409
* Adding phylip version 3.5.Steve Price2000-07-105-0/+161
| | | | | | | | | | | | This is a FREE package of programs for inferring phylogenies and carrying out certain related tasks. At present it contains 30 programs, which carry out different algorithms on different kinds of data. PR: 19705 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> Notes: svn path=/head/; revision=30408
* Add paml version 3.01.Steve Price2000-07-107-0/+89
| | | | | | | | | | | A set of utilities for performing Phylogenetic Analysis by Maximum Likelihood (PAML). PR: 19753 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> Notes: svn path=/head/; revision=30407
* Adding clustalw version 1.81.Steve Price2000-07-106-0/+66
| | | | | | | | | | A CLUSTAL W Multiple Sequence Alignment Program. PR: 19746 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu> Notes: svn path=/head/; revision=30406
* Adding chemeq version 1.10.Steve Price2000-07-105-0/+62
| | | | | | | | | | Outputs LaTeX code for chemical reactions. PR: 19374 Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> Notes: svn path=/head/; revision=30405
* - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configSteve Price2000-07-072-19/+27
| | | | | | | | | | - Support CC/CFLAGS/PREIFX/LOCALBASE/X11BASE/MAKE/etc. properly PR: 19623 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Notes: svn path=/head/; revision=30342
* Unbreak by extracting the correct distfileKris Kennaway2000-07-031-8/+2
| | | | | | | Noticed by: bento Notes: svn path=/head/; revision=30094
* ...local-distfiles... -> MASTER_SITE_LOCALAlexander Langer2000-06-201-1/+2
| | | | Notes: svn path=/head/; revision=29717
* fc is ftn77 now, adjust accordingly.Alexander Langer2000-06-113-5/+6
| | | | | | | | | PR: 19160, 19161 Submitted by: Glenn Johnson <gjohnson@nola.srrc.usda.gov> Reviewed by: will Notes: svn path=/head/; revision=29531
* Update to version 1.0.3Alexander Langer2000-06-114-24/+23
| | | | | | | | | | | | | | | PR: 19094 Submitted by: maintainer While I'm hear, clean up the port, e.g.: * Don't create/delete PATCHDIR while building this port * put the distfile, which is unversioned, to my local-distfiles space. * remove/reorder some actions, such as stripping twice. Reviewed by: will Notes: svn path=/head/; revision=29520
* Clean up this port so that it installs stuff in a more proper locationWill Andrews2000-06-093-138/+138
| | | | | | | | | | as per hier(7) and Porter's Handbook. PR: 18929 Submitted by: MAINTAINER Notes: svn path=/head/; revision=29424
* Update to the latest version as of 5 June.Akinori MUSHA2000-06-084-15/+26
| | | | | | | | PR: ports/19113, ports/19115 Submitted by: Maintainer Notes: svn path=/head/; revision=29378
* Fix build for 4.0 and later. Make DESCR shorter.Will Andrews2000-06-075-165/+181
| | | | | | | | PR: 19092 Submitted by: MAINTAINER Notes: svn path=/head/; revision=29325
* Update to 3.6.Will Andrews2000-06-076-114/+145
| | | | | | | | PR: 19091 Submitted by: MAINTAINER Notes: svn path=/head/; revision=29323
* Convert to usable F77 binary, especially on 4.0 and newer.Will Andrews2000-06-074-82/+73
| | | | | | | | PR: 19090 Submitted by: MAINTAINER Notes: svn path=/head/; revision=29317
* Fix MD5 checksum. Since I was unable to find an older version of theWill Andrews2000-06-041-1/+1
| | | | | | | | | | distfile, I can't say what changes were made. PR: 18986 Submitted by: Andreas Schulz <ats@first.gmd.de> Notes: svn path=/head/; revision=29182
* Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)Steve Price2000-05-281-2/+4
| | | | | | | while I'm here. Notes: svn path=/head/; revision=28822
* Update to version 2000.04.26.Steve Price2000-05-283-5/+3
| | | | Notes: svn path=/head/; revision=28818
* Chase the checksum (lots of code changes)Kris Kennaway2000-04-241-1/+1
| | | | | | | Noticed by: bento Notes: svn path=/head/; revision=27962
* WRKSRC-related fixes.Satoshi Asami2000-04-161-0/+1
| | | | Notes: svn path=/head/; revision=27645
* update with the new PORTNAME/PORTVERSION variablesMichael Haro2000-04-0815-53/+51
| | | | Notes: svn path=/head/; revision=27416
* Remove andy@icc.surw.chel.su as maintainer from his ports..he doesn'tKris Kennaway2000-03-291-1/+1
| | | | | | | | | have time to maintain them. Approved by: andy Notes: svn path=/head/; revision=27113
* Add virtual category "linux" to Linux apps and support libs/utils.Satoshi Asami2000-02-281-1/+1
| | | | Notes: svn path=/head/; revision=26406
* Chase the checksum (minor source changes)Kris Kennaway2000-02-271-1/+1
| | | | | | | Noticed by: bento Notes: svn path=/head/; revision=26339
* update URLsMichael Haro2000-02-241-2/+2
| | | | Notes: svn path=/head/; revision=26234
* update WWWMichael Haro2000-02-241-1/+1
| | | | Notes: svn path=/head/; revision=26233
* Forgot to remove this lineChris Piazza2000-02-061-1/+0
| | | | Notes: svn path=/head/; revision=25519
* Don't strip things we don't know how to stripChris Piazza2000-01-311-1/+1
| | | | | | | | PR: 16445 Submitted by: Alexander Langer <alex@cichlids.com> Notes: svn path=/head/; revision=25336
* fix some pkg/MESSAGE stuffMichael Haro2000-01-292-2/+2
| | | | Notes: svn path=/head/; revision=25253
* Update to ver 1.2.2Chris Piazza2000-01-142-3/+3
| | | | | | | | PR: 15955 Submitted by: Alexander Langer <alex@cichlids.com> Notes: svn path=/head/; revision=24745
* Bump glib12 's share library version to 3,Vanilla I. Shu1999-10-092-10/+2
| | | | | | | and portlint. Notes: svn path=/head/; revision=22283
* f77(1) on the Alpha doesn't grok '-malign-double' so only use it on theSteve Price1999-09-271-0/+4
| | | | | | | i386 port. Notes: svn path=/head/; revision=21975
* Enforce random pkg/COMMENT rules, including the one that states EmacsTim Vanderhoek1999-09-182-2/+2
| | | | | | | should be spelled corrcetly, although I rather liked "Emasc". Notes: svn path=/head/; revision=21709
* Grammar and WWW: fix.Tim Vanderhoek1999-09-181-7/+6
| | | | Notes: svn path=/head/; revision=21704
* Update to new version.Steve Price1999-09-183-8/+5
| | | | | | | | PR: 13459 Submitted by: maintainer Notes: svn path=/head/; revision=21703
* Compile-errorSatoshi Taoka1999-09-102-3/+9
| | | | | | | | PR: 13513 Submitted by: Glenn Johnson <gljohns@bellsouth.net> Notes: svn path=/head/; revision=21547
* Compile errorSatoshi Taoka1999-09-081-1/+1
| | | | | | | | PR: 13613 Submitted by: maintainer Notes: svn path=/head/; revision=21416
* Added gperiodic and xmolwtSatoshi Taoka1999-09-061-0/+2
| | | | Notes: svn path=/head/; revision=21331
* Displays a periodic table of the elements.Satoshi Taoka1999-09-065-0/+58
| | | | | | | | | PR: 12690 Submmitted by: Andrey Zakhvatov <andy@icc.surw.chel.su> Reviewed by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> Notes: svn path=/head/; revision=21330
* This program calculate formula weight and percent of each elements.Satoshi Taoka1999-09-066-0/+82
| | | | | | | | PR: ports/13467 Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> Notes: svn path=/head/; revision=21329
* Distfile changed on the MASTER_SITE. I have no idea if thisChris Piazza1999-08-312-6/+6
| | | | | | | | was functional or not, as there isn't a version number anywhere. Support CC in patch-aa, too... Notes: svn path=/head/; revision=21152
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