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* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0Johann Visagie2001-10-025-263/+210
| | | | | | | | | - If CORBA support is included, the default ORB has changed from omniORB to ORBit - PORTREVISION bump Notes: svn path=/head/; revision=48333
* Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie2001-09-268-0/+105
| | | | | | | | PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=48207
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(Johann Visagie2001-09-201-0/+1
| | | | Notes: svn path=/head/; revision=48013
* - Add installation of include filesJohann Visagie2001-09-194-134/+445
| | | | | | | | | | - Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER) Notes: svn path=/head/; revision=47987
* style fix: un"echo" commandsMario Sergio Fujikawa Ferreira2001-09-131-40/+40
| | | | | | | Approved by: MAINTAINER Notes: svn path=/head/; revision=47785
* Update to 3.9Mario Sergio Fujikawa Ferreira2001-09-1312-116/+161
| | | | | | | | PR: 30398 Submitted by: MAINTAINER Notes: svn path=/head/; revision=47779
* Bump png majorAndrey A. Chernov2001-09-111-1/+1
| | | | Notes: svn path=/head/; revision=47630
* Fix a buglet with the use of XFREE86_VERSION without includingAnton Berezin2001-09-061-1/+3
| | | | | | | | | bsd.port.pre.mk first. Spotted by: Dan Langille <dan@langille.org> Notes: svn path=/head/; revision=47482
* Make biology/rasmol work at all color depths.Anton Berezin2001-09-064-8/+91
| | | | | | | | PR: 30406 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Notes: svn path=/head/; revision=47480
* - Update to version 1.00.a3Johann Visagie2001-09-064-105/+167
| | | | | | | - Use pkg-req to check the installed version of Python Notes: svn path=/head/; revision=47471
* - Update to version 3.1Johann Visagie2001-08-294-6/+18
| | | | | | | | PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47087
* - Update to version 1.0.3Johann Visagie2001-08-292-3/+3
| | | | | | | | PR: 30175 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47085
* - Update to version 1.2.4Johann Visagie2001-08-222-2/+2
| | | | Notes: svn path=/head/; revision=46642
* - Update port to version 2.2gJohann Visagie2001-08-224-223/+34
| | | | Notes: svn path=/head/; revision=46641
* Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie2001-08-2210-0/+400
| | | | | | | | | | biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46640
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie2001-08-225-43/+30
| | | | | | | | | | | | renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER Notes: svn path=/head/; revision=46632
* - Move the (very) long list of manpages from the port Makefile to a separateJohann Visagie2001-08-202-123/+240
| | | | | | | | | file. Inspired by: nectar's treatment of security/heimdal Notes: svn path=/head/; revision=46533
* Update to 0.95.Trevor Johnson2001-08-204-27/+30
| | | | | | | | | | Compile molecule_tools.cpp with -O0 on all architectures, not just the Alpha, to avoid g++ pessimization. Submitted by: Matthew Emmerton <matt@gsicomp.on.ca> Notes: svn path=/head/; revision=46525
* Remove a patch turd from the pkg-plistKris Kennaway2001-08-201-1/+0
| | | | Notes: svn path=/head/; revision=46508
* Add treeviewx 0.1.1, a phylogenetic tree viewer.Johann Visagie2001-08-179-0/+82
| | | | | | | | PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46356
* Add p5-bioperl-devel 0.9.0,Johann Visagie2001-08-148-0/+566
| | | | | | | | a collection of Perl modules for bioinformatics (developer's release). Notes: svn path=/head/; revision=46228
* Update to version 1.75Johann Visagie2001-08-134-14/+27
| | | | Notes: svn path=/head/; revision=46173
* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.Johann Visagie2001-08-133-40/+46
| | | | | | | | | | - Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist. (Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. - Update my email address and the project's URL in pkg-descr. Notes: svn path=/head/; revision=46170
* upgrade to 0.26Ying-Chieh Liao2001-08-095-32/+30
| | | | | | | drop maintainership Notes: svn path=/head/; revision=46020
* Add lamarc 2001.08.06,Johann Visagie2001-08-075-0/+42
| | | | | | | | a package of programs for computing population parameters. Notes: svn path=/head/; revision=45915
* Add recombine 1.40, a program to fit population models across sites.Johann Visagie2001-08-067-0/+166
| | | | Notes: svn path=/head/; revision=45886
* Add fluctuate 1.30, a program to fit population models.Johann Visagie2001-08-067-0/+89
| | | | Notes: svn path=/head/; revision=45885
* Add coalesce 1.50, a program to fit population models.Johann Visagie2001-08-067-0/+73
| | | | Notes: svn path=/head/; revision=45884
* Correct my email address.Johann Visagie2001-08-061-1/+1
| | | | Notes: svn path=/head/; revision=45883
* Add migrate 1.2,Johann Visagie2001-08-066-0/+63
| | | | | | | | a program to estimate population sizes and migration rates. Notes: svn path=/head/; revision=45878
* Update maintainer's email address.Johann Visagie2001-08-061-1/+1
| | | | | | | Approved by: MAINTAINER Notes: svn path=/head/; revision=45865
* - Update port to version 2.0.1Johann Visagie2001-08-035-24/+110
| | | | | | | - Add two new EMBASSY applications, MEME and HMMER. Notes: svn path=/head/; revision=45769
* add USE_XLIBMario Sergio Fujikawa Ferreira2001-07-301-0/+2
| | | | | | | | PR: 29330 Submitted by: bento, Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=45635
* This port require bison to build so add USE_BISON.Steve Price2001-07-251-0/+1
| | | | Notes: svn path=/head/; revision=45485
* Remove obsolete pointer to online documentation.Johann Visagie2001-07-111-4/+2
| | | | Notes: svn path=/head/; revision=45038
* Update package's URL; my email address.Johann Visagie2001-07-112-3/+3
| | | | Notes: svn path=/head/; revision=45037
* Update Tony Maher's email address.Bill Fenner2001-07-101-1/+1
| | | | Notes: svn path=/head/; revision=45012
* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}Maxim Sobolev2001-07-101-2/+2
| | | | Notes: svn path=/head/; revision=45011
* Update to version 1.00.a2Johann Visagie2001-07-096-8/+46
| | | | Notes: svn path=/head/; revision=44955
* Add NOPORTDOCS support to pkg-plistYing-Chieh Liao2001-07-0811-1381/+1380
| | | | Notes: svn path=/head/; revision=44938
* Update to version 1.3.0Johann Visagie2001-07-062-3/+3
| | | | | | | | PR: 28761 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44816
* - General clean-up of port.Johann Visagie2001-07-055-38/+252
| | | | | | | | | | - Install PDF and HTML documentation. - Take over maintainership. Approved by: Silence from previous maintainer; no objections from -ports Notes: svn path=/head/; revision=44780
* - Update to version 0.7.1Johann Visagie2001-07-044-3/+24
| | | | | | | - Add a build-time message to inform the user of available options. Notes: svn path=/head/; revision=44743
* - Add %%PORTDOCS%% support to pkg-plist.Johann Visagie2001-07-042-3/+3
| | | | | | | | | | - $INSTALL_MAN -> $INSTALL_DATA in Makefile where appropriate. PR: 28668 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44742
* Add grappa 1.0.2, Genome Rearrangements Analysis and PhylogenyJohann Visagie2001-07-047-0/+64
| | | | | | | | | | Software. PR: 28541 Submitted by: dbader@eece.unm.edu Notes: svn path=/head/; revision=44738
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportJohann Visagie2001-07-042-107/+107
| | | | | | | | | | it. PR: 28665 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44737
* Add %%PORTDOCS%% suppor to pkg-plist.Johann Visagie2001-07-032-12/+12
| | | | | | | | | | Change $PREFIX to $MAN1PREFIX as appropriate in Makefile. PR: 28664 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44707
* Add support for %%PORTDOCS%%.Johann Visagie2001-07-031-42/+42
| | | | | | | | PR: 28670 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44703
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.Johann Visagie2001-07-032-2/+2
| | | | | | | | PR: 28666 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44684
* Update to version 3.04Johann Visagie2001-07-033-5/+5
| | | | | | | | PR: 28614 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=44678
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