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* Upgrade to 2.1.1Bill Fenner1999-03-083-8/+16
| | | | | | | | PR: ports/10228 Submitted by: Michael Haro mharo@area51.fremont.ca.us Notes: svn path=/head/; revision=17072
* Adjust port Makefiles to new EXTRACT_* variable defaults. See log ofSatoshi Asami1999-02-031-1/+3
| | | | | | | | | | | | | | | | | | | | | | bsd.port.mk rev. 1.304 for details on the change. The fix here is one of the following. (1) Define USE_BZIP2 instead of BUILD_DEPENDS on bzip2 and redefining EXTRACT_* commands. (2) Change ${EXTRACT_CMD} to ${TAR} when the command is obviously calling the "tar" command (i.e., arguments like "-xzf" are spelled out). (3) If ${EXTRACT_CMD} is called directly with ${EXTRACT_BEFORE_ARGS}, add ${EXTRACT_AFTER_ARGS} to the command line as well. (4) If any of EXTRACT_CMD, EXTRACT_BEFORE_ARGS or EXTRACT_AFTER_ARGS is set, define the other two too. Notes: svn path=/head/; revision=16518
* Correct the MD5 checksum.Vanilla I. Shu1999-01-301-1/+1
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=16431
* Added 'ONLY_FOR_ARCHS=i386' to XForms dependent ports.Hidetoshi Shimokawa1999-01-071-1/+4
| | | | | | | XForms has not been available for FreeBSD/alpha yet. Notes: svn path=/head/; revision=15906
* Add 'ONLY_FOR_ARCHS=i386' to linux_lib dependent ports.Hidetoshi Shimokawa1999-01-071-1/+3
| | | | Notes: svn path=/head/; revision=15902
* Change *_DEPENDS on lang/perl5 to USE_PERL5 so we won't have anySatoshi Asami1999-01-021-3/+2
| | | | | | | | | | dependencies to perl5 in -current. This might cause some unwanted perl5 installations on -stable (if it was originally RUN_DEPENDS, perl5 will now be installed during build too, etc.), but its lifetime is limited anyway. Notes: svn path=/head/; revision=15765
* Update MASTER_SITES.Bill Fumerola1998-12-092-4/+6
| | | | | | | Thanks To: Fenner's portsurvey and ftpsearch.lycos.com Notes: svn path=/head/; revision=15237
* Add a comment about setting env var 'FC' to 'g77' if EGCS is to beJoseph Koshy1998-11-181-3/+4
| | | | | | | used for building. Notes: svn path=/head/; revision=14622
* Activate tinker.Joseph Koshy1998-11-171-1/+2
| | | | Notes: svn path=/head/; revision=14598
* New port of the Tinker Molecular modelling program.Joseph Koshy1998-11-1711-0/+725
| | | | | | | | | PR: 8690 Reviewed by: jkoshy Submitted by: Glenn Johnson <gljohns@bellsouth.net> Notes: svn path=/head/; revision=14597
* Use bsd.port.{pre,post}.mk to move PORTOBJFORMAT to front, or changeSatoshi Asami1998-11-141-6/+8
| | | | | | | | shell loops to make loops. Use EXTRA_PKG_FLAGS to add install scripts instead of adding it to PKG_FLAGS after bsd.port.mk. Notes: svn path=/head/; revision=14512
* Update of MASTER_SITES.Bill Fumerola1998-11-131-2/+2
| | | | | | | | PR: ports/8600 Submitted by: frankch@waru.life.nthu.edu.tw Notes: svn path=/head/; revision=14501
* Unbreak for ELFJustin M. Seger1998-11-031-3/+1
| | | | Notes: svn path=/head/; revision=14321
* Master site changed, update MD5.Joseph Koshy1998-10-082-3/+3
| | | | | | | | PR: 8200 Submitted by: frankch@waru.life.nthu.edu.tw (maintainer) Notes: svn path=/head/; revision=13734
* Checksum changed again....Satoshi Asami1998-09-281-1/+1
| | | | Notes: svn path=/head/; revision=13509
* Remove empty doc dir on deinstall.Steve Price1998-09-271-0/+1
| | | | Notes: svn path=/head/; revision=13429
* Don't strip the binary when building ELF.Steve Price1998-09-271-1/+5
| | | | Notes: svn path=/head/; revision=13428
* Checksum of seaview.tar changed.Steve Price1998-09-271-1/+1
| | | | Notes: svn path=/head/; revision=13427
* Mark broken for ELF because of xforms port.Steve Price1998-09-261-2/+4
| | | | Notes: svn path=/head/; revision=13406
* Take the manpages out of pkg/PLIST and put them in MAN1.Steve Price1998-09-162-2/+3
| | | | Notes: svn path=/head/; revision=13165
* Unbreak by making a new checksum and fixing the makefile to find a new sourceJustin M. Seger1998-08-213-6/+4
| | | | | | | file. Notes: svn path=/head/; revision=12701
* BROKEN:Justin M. Seger1998-08-201-1/+3
| | | | | | | | # make checksum >> Checksum mismatch for seaview.tar. Notes: svn path=/head/; revision=12692
* Remove manpages from pkg/PLISTDavid E. O'Brien1998-08-131-8/+0
| | | | Notes: svn path=/head/; revision=12504
* Fix up dependencies for ports that moved into the x11-toolkits category.Satoshi Asami1998-08-071-2/+2
| | | | Notes: svn path=/head/; revision=12335
* Rename all USE_X11 to USE_X_PREFIX. Requires 1.279 (3.0-current) orSatoshi Asami1998-08-051-2/+2
| | | | | | | | 1.227.2.41 (2.2-stable) of bsd.port.mk for this to be interpreted correctly. Notes: svn path=/head/; revision=12289
* Making x11 category more useful project part 1: take out "x11" ofSatoshi Asami1998-07-272-4/+4
| | | | | | | | | ports that are mere users of X. Partial list submitted by: Josh Gilliam <josh@quick.net> Notes: svn path=/head/; revision=12173
* Another batch of "Add homepage." for benchmarks through converters.Tim Vanderhoek1998-07-251-0/+2
| | | | Notes: svn path=/head/; revision=12104
* Turn on hmmer.Steve Price1998-07-121-1/+2
| | | | Notes: svn path=/head/; revision=11872
* Initial import of hmmer version 2.0.Steve Price1998-07-126-0/+86
| | | | | | | | | | Profile hidden Markov models for biological sequence analysis. PR: 7120 Submitted by: Matthew Jason Euclid Barnhart <barnhart@sequencer.wustl.edu> Notes: svn path=/head/; revision=11871
* Update to 2.6b2.1.Steve Price1998-05-243-7/+7
| | | | | | | | PR: 6673 Submitted by: maintainer Notes: svn path=/head/; revision=11122
* mkdir -> ${MKDIR}. This also has the side-effect of making thisSatoshi Asami1998-03-301-2/+2
| | | | | | | port reinstall-friendly. Notes: svn path=/head/; revision=10380
* Add DIST_SUBDIR, the name "periodic.tab" is kinda generic. Speaking of which,Satoshi Asami1998-03-172-7/+8
| | | | | | | its checksum was different so fix it too. Notes: svn path=/head/; revision=10207
* Add linux_lib DEPEND lines.Justin M. Seger1998-03-161-1/+4
| | | | | | | | PR: 5816 Submitted by: frankch@waru.life.nthu.edu.tw Notes: svn path=/head/; revision=10198
* Activate povchem.Vanilla I. Shu1998-03-161-1/+2
| | | | Notes: svn path=/head/; revision=10174
* Povchem is a tool to generate POV file from a PDB(ProteinVanilla I. Shu1998-03-167-0/+78
| | | | | | | | | | DataBank) entry. One can adjust many parameters for a high quality molecular graphic. PR: ports/6008 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw> Notes: svn path=/head/; revision=10173
* Activate kinemageJustin M. Seger1998-01-291-1/+2
| | | | Notes: svn path=/head/; revision=9513
* Import of ports/biology/kinemage 4.2Justin M. Seger1998-01-295-0/+37
| | | | | | | | | | | Kinemage is a molecular visualization program. It is very suitable for educational usage. PR: ports/5217 Submitted by: frankch@waru.life.nthu.edu.tw Notes: svn path=/head/; revision=9512
* Typo (LIB_DEPEND -> LIB_DEPENDS).Satoshi Asami1997-12-261-2/+2
| | | | Notes: svn path=/head/; revision=9191
* Move pkg/INSTALL to pkg/MESSAGE, add another patch from maintainer.Vanilla I. Shu1997-12-243-6/+14
| | | | | | | | | PR: ports/5361 Reviewed by: asami Submitted by: maintainer Notes: svn path=/head/; revision=9162
* Activate seaview.Vanilla I. Shu1997-12-211-1/+2
| | | | Notes: svn path=/head/; revision=9151
* Seaview is a multiple DNA sequence alignment editor.Vanilla I. Shu1997-12-216-0/+72
| | | | | | | | | | It is capable of align DNA sequences from various organisms and assign their position in the phylogenic tree. PR: ports/5229 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw> Notes: svn path=/head/; revision=9150
* Activate babel.Vanilla I. Shu1997-12-211-1/+2
| | | | Notes: svn path=/head/; revision=9149
* This is a port of a molecular file format converter, babel.Vanilla I. Shu1997-12-217-0/+95
| | | | | | | | | | Babel is developed by Dolata Group, Department of Chemistry, University of Arizona and Ohio State University. PR: ports/5215 Submitted by: Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw> Notes: svn path=/head/; revision=9147
* Activate rasmol.Vanilla I. Shu1997-12-151-2/+2
| | | | Notes: svn path=/head/; revision=9084
* rasmol is a biological molecule visualization program.Vanilla I. Shu1997-12-156-0/+46
| | | | | | | | PR: ports/5214 Submitted by: frankch@waru.life.nthu.edu.tw Notes: svn path=/head/; revision=9083
* The new ports category "biology" starts here today. No DarwinSatoshi Asami1997-12-132-0/+7
jokes please! Notes: svn path=/head/; revision=9066
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