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* Update to 2001.12.20Patrick Li2002-02-226-18/+88
| | | | | | | | PR: 35203 Submitted by: maintainer Notes: svn path=/head/; revision=55075
* Pass maintainership to submitter and add a backup master site.Pete Fritchman2002-02-201-2/+3
| | | | | | | | PR: 35043 Submitted by: Christian Brueffer <chris@unixpages.org> Notes: svn path=/head/; revision=54953
* - Install documentationPatrick Li2002-02-134-6/+19
| | | | | | | | | | - Update WWW: PR: 34889 Submitted by: maintainer Notes: svn path=/head/; revision=54633
* Use ${ECHO_CMD} instead of ${ECHO} where you mean the echo command;Akinori MUSHA2002-01-291-4/+4
| | | | | | | | | | | the ECHO macro is set to "echo" by default, but it is set to "true" if make(1) is invoked with the -s option while ECHO_CMD is always set to the echo command. Use command macros where appropriate. Notes: svn path=/head/; revision=53948
* Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.Johann Visagie2002-01-259-0/+438
| | | | Notes: svn path=/head/; revision=53719
* - Update to version of 2001-12-30Johann Visagie2002-01-252-2/+2
| | | | Notes: svn path=/head/; revision=53713
* - Update to version 1.82Johann Visagie2002-01-254-13/+28
| | | | Notes: svn path=/head/; revision=53712
* - Update to version 0.7.2, somewhat overdue. :-)Johann Visagie2002-01-252-27/+53
| | | | Notes: svn path=/head/; revision=53709
* o update to 3.7.FUJISHIMA Satsuki2002-01-232-34/+7
| | | | | | | | | | | | differences from the PR: - this port requires Xlib so add USE_XLIB. - remove unnecessary PORTREVISION. PR: 34196 Submitted by: maintainer Notes: svn path=/head/; revision=53656
* o update to 0.7.FUJISHIMA Satsuki2002-01-232-2/+2
| | | | | | | | PR: 34197 Submitted by: maintainer Notes: svn path=/head/; revision=53655
* update to 1.3.3.FUJISHIMA Satsuki2002-01-222-2/+2
| | | | | | | | PR: 34180 Submitted by: KATO Tsuguru <tkato@prontomail.com> Notes: svn path=/head/; revision=53604
* - Update to version 1.00a4Johann Visagie2002-01-223-10/+261
| | | | | | | | PR: 33719 Submitted by: Hye-Shik Chang <perky@fallin.lv> Notes: svn path=/head/; revision=53537
* Update to 0.99.7. Use new DATADIR macro. Install documentation,Trevor Johnson2002-01-204-24/+55
| | | | | | | including examples. Add warning. Notes: svn path=/head/; revision=53370
* Upgrade tinker to the latest revisionYing-Chieh Liao2002-01-195-64/+101
| | | | | | | | PR: 33425 Submitted by: maintainer Notes: svn path=/head/; revision=53339
* - Update to version 2.2.0Johann Visagie2002-01-183-15/+335
| | | | | | | | | | | | - Update included EMBASSY package EMNU - Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from being generated properly - Consider this an interim update merely to track the latest version - more work is required to activate the newly included "Jemboss" Java GUI interface Notes: svn path=/head/; revision=53296
* Update to 0.2.Pete Fritchman2001-12-294-19/+8
| | | | | | | | PR: 33218 Submitted by: maintainer Notes: svn path=/head/; revision=52346
* Initial import of artemis 4.0Kevin Lo2001-12-226-0/+1529
| | | | | | | | | | Artemis is a DNA sequence viewer and annotation tool. PR: 32914 Submitted by: Camson <chuynh@biolateral.com.au> Notes: svn path=/head/; revision=51988
* Update to 0.3.3.Akinori MUSHA2001-12-213-2/+3
| | | | Notes: svn path=/head/; revision=51948
* Add gff2ps 0.97b, converts gff-formated genomic data-sets toPete Fritchman2001-12-196-0/+42
| | | | | | | | | | PostScript. PR: 32920 Submitted by: Camson Huynh <chuynh@biolateral.com.au> Notes: svn path=/head/; revision=51813
* Add dna-qc 1993.07.26, a quality control algorithm for DNAPete Fritchman2001-12-197-0/+94
| | | | | | | | | | sequencing projects. PR: 32998 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=51777
* Update to version 2001.10.12.Steve Price2001-12-162-2/+2
| | | | Notes: svn path=/head/; revision=51634
* fix pkg-plistYing-Chieh Liao2001-12-081-0/+1
| | | | | | | | PR: 32609 Submitted by: Ports Fury Notes: svn path=/head/; revision=51250
* * Replace pkg-message about setting BABEL_DIR with a wrapper scriptChristian Weisgerber2001-12-028-26/+55
| | | | | | | | | | | that does. * Remove misleading full path name from usage message. * Improve fgets() usage. * Add converters category. * Improve pkg-comment and pkg-descr. Notes: svn path=/head/; revision=50855
* - update to 1.3.2Pete Fritchman2001-11-282-7/+4
| | | | | | | | | | - use DOCSDIR PR: 32305 Submitted by: KATO Tsuguru <tkato@prontomail.com> Notes: svn path=/head/; revision=50701
* Update to 0.3.2.Akinori MUSHA2001-11-283-4/+21
| | | | Notes: svn path=/head/; revision=50693
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ↵Mario Sergio Fujikawa Ferreira2001-11-201-1/+1
| | | | | | | the later case Notes: svn path=/head/; revision=50306
* Style police: WWW tags should either end in a file/script or TRAILING /; Fix ↵Mario Sergio Fujikawa Ferreira2001-11-202-2/+2
| | | | | | | the later case Notes: svn path=/head/; revision=50301
* chase checksum for repacked distfile almost an year ago.FUJISHIMA Satsuki2001-11-063-2/+3
| | | | | | | | | | | | Maintainer does not have previous distfile. As the distfile for this port is not distributable, it is OK to me to change distinfo now. PR: 31010 Submitted by: maintainer Notes: svn path=/head/; revision=49661
* Add ruby-bio (BioRuby), an integrated environment for BioinformaticsAkinori MUSHA2001-10-246-0/+91
| | | | | | | written in Ruby. Notes: svn path=/head/; revision=49156
* update WWW and master siteYing-Chieh Liao2001-10-222-2/+10
| | | | | | | | PR: 31011 Submitted by: maintainer Notes: svn path=/head/; revision=49054
* Remove a redundant trailing space.Akinori MUSHA2001-10-211-1/+1
| | | | Notes: svn path=/head/; revision=49023
* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0Johann Visagie2001-10-025-263/+210
| | | | | | | | | - If CORBA support is included, the default ORB has changed from omniORB to ORBit - PORTREVISION bump Notes: svn path=/head/; revision=48333
* Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie2001-09-268-0/+105
| | | | | | | | PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=48207
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(Johann Visagie2001-09-201-0/+1
| | | | Notes: svn path=/head/; revision=48013
* - Add installation of include filesJohann Visagie2001-09-194-134/+445
| | | | | | | | | | - Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER) Notes: svn path=/head/; revision=47987
* style fix: un"echo" commandsMario Sergio Fujikawa Ferreira2001-09-131-40/+40
| | | | | | | Approved by: MAINTAINER Notes: svn path=/head/; revision=47785
* Update to 3.9Mario Sergio Fujikawa Ferreira2001-09-1312-116/+161
| | | | | | | | PR: 30398 Submitted by: MAINTAINER Notes: svn path=/head/; revision=47779
* Bump png majorAndrey A. Chernov2001-09-111-1/+1
| | | | Notes: svn path=/head/; revision=47630
* Fix a buglet with the use of XFREE86_VERSION without includingAnton Berezin2001-09-061-1/+3
| | | | | | | | | bsd.port.pre.mk first. Spotted by: Dan Langille <dan@langille.org> Notes: svn path=/head/; revision=47482
* Make biology/rasmol work at all color depths.Anton Berezin2001-09-064-8/+91
| | | | | | | | PR: 30406 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Notes: svn path=/head/; revision=47480
* - Update to version 1.00.a3Johann Visagie2001-09-064-105/+167
| | | | | | | - Use pkg-req to check the installed version of Python Notes: svn path=/head/; revision=47471
* - Update to version 3.1Johann Visagie2001-08-294-6/+18
| | | | | | | | PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47087
* - Update to version 1.0.3Johann Visagie2001-08-292-3/+3
| | | | | | | | PR: 30175 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47085
* - Update to version 1.2.4Johann Visagie2001-08-222-2/+2
| | | | Notes: svn path=/head/; revision=46642
* - Update port to version 2.2gJohann Visagie2001-08-224-223/+34
| | | | Notes: svn path=/head/; revision=46641
* Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie2001-08-2210-0/+400
| | | | | | | | | | biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46640
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie2001-08-225-43/+30
| | | | | | | | | | | | renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER Notes: svn path=/head/; revision=46632
* - Move the (very) long list of manpages from the port Makefile to a separateJohann Visagie2001-08-202-123/+240
| | | | | | | | | file. Inspired by: nectar's treatment of security/heimdal Notes: svn path=/head/; revision=46533
* Update to 0.95.Trevor Johnson2001-08-204-27/+30
| | | | | | | | | | Compile molecule_tools.cpp with -O0 on all architectures, not just the Alpha, to avoid g++ pessimization. Submitted by: Matthew Emmerton <matt@gsicomp.on.ca> Notes: svn path=/head/; revision=46525
* Remove a patch turd from the pkg-plistKris Kennaway2001-08-201-1/+0
| | | | Notes: svn path=/head/; revision=46508
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