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Author
Age
Files
Lines
*
biology/paml: Set PORTVERSION directly
Joseph Mingrone
2018-04-26
1
-1
/
+1
*
biology/canu: Upgrade to 1.7 release
Jason W. Bacon
2018-04-26
5
-37
/
+51
*
biology/paml: Update to version 4.9h
Joseph Mingrone
2018-04-25
3
-27
/
+181
*
Switch all pypi.python.org WWWs to a new PyPi home pypi.org where
Dmitry Marakasov
2018-04-25
2
-2
/
+2
*
biology/unanimity: Pacific Biosciences consensus library and applications
Jason W. Bacon
2018-04-24
11
-0
/
+146
*
biology/seaview: Update version 4.6.3=>4.6.5
Muhammad Moinur Rahman
2018-04-24
2
-6
/
+8
*
biology/pbcopper: Core C++ library for Pacific Biosciences tools
Jason W. Bacon
2018-04-23
6
-0
/
+133
*
biology/pbbam: PacBio BAM C++ library, with SWIG bindings
Jason W. Bacon
2018-04-23
5
-0
/
+182
*
biology/pbseqan: Pacific Biosciences patched and stripped down SeqAn
Jason W. Bacon
2018-04-21
5
-0
/
+698
*
biology/diamond: Update to version 0.9.21
Joseph Mingrone
2018-04-20
2
-5
/
+4
*
biology/ddocent: Bash pipeline for RAD sequencing
Jason W. Bacon
2018-04-20
8
-0
/
+617
*
biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...
Jason W. Bacon
2018-04-20
14
-0
/
+293
*
biology/bedtools: Upgrade to 2.27.1
Jason W. Bacon
2018-04-19
6
-54
/
+36
*
devel/boost-*: update to 1.67.0
Jan Beich
2018-04-18
2
-1
/
+2
*
biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF files
Jason W. Bacon
2018-04-17
8
-0
/
+511
*
biology/fastahack: Utility for indexing and sequence extraction from FASTA files
Jason W. Bacon
2018-04-16
6
-0
/
+99
*
biology/smithwaterman: Smith-waterman-gotoh alignment algorithm
Jason W. Bacon
2018-04-15
6
-0
/
+149
*
biology/tabixpp: C++ wrapper to tabix indexer
Jason W. Bacon
2018-04-14
5
-0
/
+131
*
- Update to 1.71
Wen Heping
2018-04-09
2
-5
/
+4
*
biology/pear-merger: Memory-efficient and accurate paired-end read merger
Jason W. Bacon
2018-04-04
4
-0
/
+37
*
biology/seqtk: Tool for processing sequences in FASTA/FASTQ format
Jason W. Bacon
2018-04-03
5
-0
/
+51
*
biology/trimadap: Trim adapter sequences from Illumina data
Jason W. Bacon
2018-04-03
6
-0
/
+65
*
biology/rainbow: Efficient clustering and assembling of short reads
Jason W. Bacon
2018-04-02
5
-0
/
+50
*
- Update to 1.61
Wen Heping
2018-04-01
2
-6
/
+7
*
biology/stacks: Software pipeline for building loci from short-read sequences
Jason W. Bacon
2018-03-31
7
-0
/
+136
*
biology/libgtextutils: Unbreak for FreeBSD 12
Jason W. Bacon
2018-03-29
2
-1
/
+12
*
biology/bamtools: API and toolkit for handling BAM files
Jason W. Bacon
2018-03-28
7
-0
/
+76
*
biology/ncbi-blast+: Upgrade to 2.7.1
Jason W. Bacon
2018-03-27
6
-377
/
+409
*
biology/iqtree: Update to version 1.6.3
Joseph Mingrone
2018-03-23
2
-5
/
+4
*
biology/py-pysam: Update to 0.14.1
Yuri Victorovich
2018-03-21
2
-5
/
+5
*
Mark broken on armvX and mips.
Mark Linimon
2018-03-18
1
-0
/
+4
*
Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.
Mark Linimon
2018-03-18
1
-0
/
+3
*
biology/diamond: Update to version 0.9.19
Joseph Mingrone
2018-03-17
2
-5
/
+4
*
biology/diamond: Update to version 0.9.18-49
Joseph Mingrone
2018-03-15
2
-4
/
+5
*
Return maho@'s ports to the pool after his commit bit expired.
Rene Ladan
2018-03-11
1
-1
/
+1
*
Remove now-useless, commented-out lines.
Mark Linimon
2018-03-10
1
-4
/
+0
*
Bump PORTREVISIONs of all users of math/mpc that we just updated to
Gerald Pfeifer
2018-03-10
21
-15
/
+21
*
biology/seqan-apps, biology/seqan: Update to 2.4.0
Yuri Victorovich
2018-03-10
7
-1269
/
+90
*
biology/iqtree: Update to version 1.6.2
Joseph Mingrone
2018-03-03
2
-5
/
+4
*
Reduce dependency on the python2 metaport
Antoine Brodin
2018-02-19
1
-1
/
+2
*
biology/py-pysam: Update to 0.14
Yuri Victorovich
2018-02-10
2
-4
/
+4
*
biology/py-bx-python: Update to 0.8.1
Yuri Victorovich
2018-02-10
2
-8
/
+9
*
Canonicalize PyPi WWWs:
Dmitry Marakasov
2018-02-08
1
-1
/
+1
*
biology/diamond: Update to version 0.9.17
Joseph Mingrone
2018-02-01
2
-4
/
+4
*
- Update to 3.3.20180129
Wen Heping
2018-02-01
2
-5
/
+4
*
Multiple ports:
Jason W. Bacon
2018-01-31
16
-29
/
+16
*
devel/boost-*: update to 1.66.0
Jan Beich
2018-01-18
2
-1
/
+2
*
- Convert to option helper install target (add OPTIONS_DEFINE=DOCS
Alexey Dokuchaev
2018-01-11
1
-2
/
+4
*
Update Qt5 ports to 5.9.3.
Raphael Kubo da Costa
2018-01-06
1
-0
/
+10
*
biology/seaview: Update version 4.6.2=>4.6.3
Muhammad Moinur Rahman
2018-01-05
3
-7
/
+8
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