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2019-01-12biology/stacks: Upgrade to 2.3Jason W. Bacon4-38/+14
2019-01-11New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon7-0/+577
2019-01-11Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold1-1/+2
2019-01-07biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger1-0/+1
2019-01-07biology/groopm fails to build with python3Antoine Brodin1-1/+1
2019-01-06Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh2-0/+2
2019-01-05Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh1-1/+1
2019-01-01biology/ncbi-blast+: Upgrade to 2.8.1Jason W. Bacon4-32/+244
2018-12-31biology/diamond: Update to version 0.9.24Joseph Mingrone4-27/+12
2018-12-27biology/iqtree: switch to outsource cmake buildJoseph Mingrone1-2/+2
2018-12-26Update math/eigen3 to 3.3.7Tobias C. Berner1-0/+1
2018-12-25Change cmake default behaviour to outsource.Tobias C. Berner8-8/+8
2018-12-23biology/iqtree: Update to version 1.6.9Joseph Mingrone2-5/+4
2018-12-22- Update to 1.73Wen Heping2-5/+4
2018-12-21Remove expired ports:Rene Ladan4-57/+0
2018-12-19biology/gff2ps: update 0.98d to 0.98lVinícius Zavam2-5/+5
2018-12-17biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone3-10/+11
2018-12-16Update Qt5 to 5.12.0Tobias C. Berner1-0/+11
2018-12-15New port: biology/py-fastTSNE: Fast, parallel implementations of t-SNEYuri Victorovich5-0/+47
2018-12-12Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer37-20/+37
2018-12-12devel/boost-*: update to 1.69.0Jan Beich5-3/+5
2018-12-11Remove biology/njplotJoseph Mingrone5-111/+0
2018-12-11biology/mummer: Add USES=compiler:c++11-langYuri Victorovich1-1/+1
2018-12-11biology/mummer: Update 3.23 -> 4.0.0beta2-2Yuri Victorovich3-47/+61
2018-12-11biology/mummer: Take maintainershipYuri Victorovich1-1/+1
2018-12-07New port: math/checkm: Quality assessment tool for the microbial genomesYuri Victorovich4-0/+43
2018-12-07New port: math/groopm: Metagenomic binning suiteYuri Victorovich4-0/+35
2018-12-04devel/gradle: Update to 5.0Yuri Victorovich2-4/+4
2018-12-03biology/gatk: Change gradle4->gradle because it builds fine with both gradle ...Yuri Victorovich1-2/+2
2018-12-03biology/gatk: Correct the targetYuri Victorovich1-1/+1
2018-12-03New port: biology/gatk: Variant discovery in high-throughput sequencing dataYuri Victorovich6-0/+118
2018-12-02Mark QT4 ports/functionality for removal on 2019-03-15Rene Ladan1-0/+3
2018-11-18biology/igv: Update 2.4.15 -> 2.4.16Yuri Victorovich2-6/+6
2018-11-13biology/molden: update to 5.8.2Johannes M Dieterich3-10/+45
2018-11-09biology/seqan-apps: fix build with GCC-based architecturesSteve Wills1-2/+4
2018-11-07biology/molden: Unbreak: fix the problem that it can't find libgcc_s.so from gccYuri Victorovich1-1/+2
2018-11-05Fix build failure with base GCC because of double typedefs.Mark Linimon1-0/+48
2018-11-05Remove the incorrect typedefs to fix build on tier-2.Mark Linimon2-0/+29
2018-11-05Remove the inccorrect typedefs to fix build on tier-2.Mark Linimon1-4/+0
2018-11-04biology/igv: Update 2.4.10 -> 2.4.15Yuri Victorovich3-24/+21
2018-11-04biology/canu: Upgrade to 1.8, add experimental SLURM integrationJason W. Bacon5-31/+102
2018-11-03biology/bowtie: Patch for gcc8 and clean upJason W. Bacon2-6/+17
2018-11-03biology/bowtie: Revert previous commit with missing log messageJason W. Bacon2-17/+5
2018-11-03biology/bowtie: PatchJason W. Bacon2-5/+17
2018-10-30biology/py-loompy: Update 2.0.15 -> 2.0.16Yuri Victorovich2-4/+4
2018-10-28biology/iqtree: Update to version 1.6.8Joseph Mingrone2-4/+4
2018-10-28Fix build with tier-2 arches.Mark Linimon1-1/+7
2018-10-28biology/py-pyfaidx: Update 0.5.5.1 -> 0.5.5.2Yuri Victorovich2-4/+4
2018-10-23biology/p5-transdecoder: Upgrade to 5.4.0Jason W. Bacon4-30/+44
2018-10-20biology/hyphy: Update to version 2.3.14.16Joseph Mingrone3-5/+11
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