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2018-05-16biology/fastx-toolkit: Fix build on FreeBSD 12Jason W. Bacon2-2/+19
2018-05-15Add upstream patch to fix the build with Qt 5.10.Raphael Kubo da Costa2-1/+31
2018-05-15- Update to 3.3.20180214Wen Heping2-5/+6
2018-05-14biology/diamond: Update to version 0.9.22Joseph Mingrone2-4/+4
2018-05-14biology/hyphy: Bump PORTREVISION after upstream rerolled releaseJoseph Mingrone3-14/+4
2018-05-13biology/py-biopython: Unbreak on python3; Add licenseYuri Victorovich1-2/+9
2018-05-11biology/iqtree: Update to version 1.6.5Joseph Mingrone2-4/+4
2018-05-11New port, biology/hyphy: Hypothesis testing using PhylogeniesJoseph Mingrone7-0/+645
2018-05-07Mark BROKEN: checksum and size mismatchAntoine Brodin1-0/+2
2018-05-05Deprecate ports broken for more than 6 monthsAntoine Brodin5-0/+10
2018-04-30biology/iqtree: Update to version 1.6.4Joseph Mingrone2-4/+4
2018-04-26biology/paml: Set PORTVERSION directlyJoseph Mingrone1-1/+1
2018-04-26biology/canu: Upgrade to 1.7 releaseJason W. Bacon5-37/+51
2018-04-25biology/paml: Update to version 4.9hJoseph Mingrone3-27/+181
2018-04-25Switch all pypi.python.org WWWs to a new PyPi home pypi.org whereDmitry Marakasov2-2/+2
2018-04-24biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon11-0/+146
2018-04-24biology/seaview: Update version 4.6.3=>4.6.5Muhammad Moinur Rahman2-6/+8
2018-04-23biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon6-0/+133
2018-04-23biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon5-0/+182
2018-04-21biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon5-0/+698
2018-04-20biology/diamond: Update to version 0.9.21Joseph Mingrone2-5/+4
2018-04-20biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon8-0/+617
2018-04-20biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon14-0/+293
2018-04-19biology/bedtools: Upgrade to 2.27.1Jason W. Bacon6-54/+36
2018-04-18devel/boost-*: update to 1.67.0Jan Beich2-1/+2
2018-04-17biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon8-0/+511
2018-04-16biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon6-0/+99
2018-04-15biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon6-0/+149
2018-04-14biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon5-0/+131
2018-04-09- Update to 1.71Wen Heping2-5/+4
2018-04-04biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon4-0/+37
2018-04-03biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon5-0/+51
2018-04-03biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon6-0/+65
2018-04-02biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon5-0/+50
2018-04-01- Update to 1.61Wen Heping2-6/+7
2018-03-31biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon7-0/+136
2018-03-29biology/libgtextutils: Unbreak for FreeBSD 12Jason W. Bacon2-1/+12
2018-03-28biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon7-0/+76
2018-03-27biology/ncbi-blast+: Upgrade to 2.7.1Jason W. Bacon6-377/+409
2018-03-23biology/iqtree: Update to version 1.6.3Joseph Mingrone2-5/+4
2018-03-21biology/py-pysam: Update to 0.14.1Yuri Victorovich2-5/+5
2018-03-18Mark broken on armvX and mips.Mark Linimon1-0/+4
2018-03-18Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.Mark Linimon1-0/+3
2018-03-17biology/diamond: Update to version 0.9.19Joseph Mingrone2-5/+4
2018-03-15biology/diamond: Update to version 0.9.18-49Joseph Mingrone2-4/+5
2018-03-11Return maho@'s ports to the pool after his commit bit expired.Rene Ladan1-1/+1
2018-03-10Remove now-useless, commented-out lines.Mark Linimon1-4/+0
2018-03-10Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer21-15/+21
2018-03-10biology/seqan-apps, biology/seqan: Update to 2.4.0Yuri Victorovich7-1269/+90
2018-03-03biology/iqtree: Update to version 1.6.2Joseph Mingrone2-5/+4
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