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2001-10-02- Update the included (optional) Biopython-CORBA pacakge to version 0.3.0Johann Visagie5-263/+210
- If CORBA support is included, the default ORB has changed from omniORB to ORBit - PORTREVISION bump Notes: svn path=/head/; revision=48333
2001-09-26Add nclever 4.0, a character-based version of NCBI's Entrez program.Johann Visagie8-0/+105
PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=48207
2001-09-20- Add NO_LATEST_LINK, which should've been there in the first place. :-(Johann Visagie1-0/+1
Notes: svn path=/head/; revision=48013
2001-09-19- Add installation of include filesJohann Visagie4-134/+445
- Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER) Notes: svn path=/head/; revision=47987
2001-09-13style fix: un"echo" commandsMario Sergio Fujikawa Ferreira1-40/+40
Approved by: MAINTAINER Notes: svn path=/head/; revision=47785
2001-09-13Update to 3.9Mario Sergio Fujikawa Ferreira12-116/+161
PR: 30398 Submitted by: MAINTAINER Notes: svn path=/head/; revision=47779
2001-09-11Bump png majorAndrey A. Chernov1-1/+1
Notes: svn path=/head/; revision=47630
2001-09-06Fix a buglet with the use of XFREE86_VERSION without includingAnton Berezin1-1/+3
bsd.port.pre.mk first. Spotted by: Dan Langille <dan@langille.org> Notes: svn path=/head/; revision=47482
2001-09-06Make biology/rasmol work at all color depths.Anton Berezin4-8/+91
PR: 30406 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Notes: svn path=/head/; revision=47480
2001-09-06- Update to version 1.00.a3Johann Visagie4-105/+167
- Use pkg-req to check the installed version of Python Notes: svn path=/head/; revision=47471
2001-08-29- Update to version 3.1Johann Visagie4-6/+18
PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47087
2001-08-29- Update to version 1.0.3Johann Visagie2-3/+3
PR: 30175 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=47085
2001-08-22- Update to version 1.2.4Johann Visagie2-2/+2
Notes: svn path=/head/; revision=46642
2001-08-22- Update port to version 2.2gJohann Visagie4-223/+34
Notes: svn path=/head/; revision=46641
2001-08-22Add seqio 1.2.2, a set of C functions which can read/writeJohann Visagie10-0/+400
biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46640
2001-08-22- Update to version 3.6.a2.1 - since the distribution tarball hadn't beenJohann Visagie5-43/+30
renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER Notes: svn path=/head/; revision=46632
2001-08-20- Move the (very) long list of manpages from the port Makefile to a separateJohann Visagie2-123/+240
file. Inspired by: nectar's treatment of security/heimdal Notes: svn path=/head/; revision=46533
2001-08-20Update to 0.95.Trevor Johnson4-27/+30
Compile molecule_tools.cpp with -O0 on all architectures, not just the Alpha, to avoid g++ pessimization. Submitted by: Matthew Emmerton <matt@gsicomp.on.ca> Notes: svn path=/head/; revision=46525
2001-08-20Remove a patch turd from the pkg-plistKris Kennaway1-1/+0
Notes: svn path=/head/; revision=46508
2001-08-17Add treeviewx 0.1.1, a phylogenetic tree viewer.Johann Visagie9-0/+82
PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au> Notes: svn path=/head/; revision=46356
2001-08-14Add p5-bioperl-devel 0.9.0,Johann Visagie8-0/+566
a collection of Perl modules for bioinformatics (developer's release). Notes: svn path=/head/; revision=46228
2001-08-13Update to version 1.75Johann Visagie4-14/+27
Notes: svn path=/head/; revision=46173
2001-08-13- Properly list run-time dependencies in RUN_DEPENDS in Makefile.Johann Visagie3-40/+46
- Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist. (Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. - Update my email address and the project's URL in pkg-descr. Notes: svn path=/head/; revision=46170
2001-08-09upgrade to 0.26Ying-Chieh Liao5-32/+30
drop maintainership Notes: svn path=/head/; revision=46020
2001-08-07Add lamarc 2001.08.06,Johann Visagie5-0/+42
a package of programs for computing population parameters. Notes: svn path=/head/; revision=45915
2001-08-06Add recombine 1.40, a program to fit population models across sites.Johann Visagie7-0/+166
Notes: svn path=/head/; revision=45886
2001-08-06Add fluctuate 1.30, a program to fit population models.Johann Visagie7-0/+89
Notes: svn path=/head/; revision=45885
2001-08-06Add coalesce 1.50, a program to fit population models.Johann Visagie7-0/+73
Notes: svn path=/head/; revision=45884
2001-08-06Correct my email address.Johann Visagie1-1/+1
Notes: svn path=/head/; revision=45883
2001-08-06Add migrate 1.2,Johann Visagie6-0/+63
a program to estimate population sizes and migration rates. Notes: svn path=/head/; revision=45878
2001-08-06Update maintainer's email address.Johann Visagie1-1/+1
Approved by: MAINTAINER Notes: svn path=/head/; revision=45865
2001-08-03- Update port to version 2.0.1Johann Visagie5-24/+110
- Add two new EMBASSY applications, MEME and HMMER. Notes: svn path=/head/; revision=45769
2001-07-30add USE_XLIBMario Sergio Fujikawa Ferreira1-0/+2
PR: 29330 Submitted by: bento, Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=45635
2001-07-25This port require bison to build so add USE_BISON.Steve Price1-0/+1
Notes: svn path=/head/; revision=45485
2001-07-11Remove obsolete pointer to online documentation.Johann Visagie1-4/+2
Notes: svn path=/head/; revision=45038
2001-07-11Update package's URL; my email address.Johann Visagie2-3/+3
Notes: svn path=/head/; revision=45037
2001-07-10Update Tony Maher's email address.Bill Fenner1-1/+1
Notes: svn path=/head/; revision=45012
2001-07-10${PREFIX}/share/${PORTNAME} --> ${DATADIR}Maxim Sobolev1-2/+2
Notes: svn path=/head/; revision=45011
2001-07-09Update to version 1.00.a2Johann Visagie6-8/+46
Notes: svn path=/head/; revision=44955
2001-07-08Add NOPORTDOCS support to pkg-plistYing-Chieh Liao11-1381/+1380
Notes: svn path=/head/; revision=44938
2001-07-06Update to version 1.3.0Johann Visagie2-3/+3
PR: 28761 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44816
2001-07-05- General clean-up of port.Johann Visagie5-38/+252
- Install PDF and HTML documentation. - Take over maintainership. Approved by: Silence from previous maintainer; no objections from -ports Notes: svn path=/head/; revision=44780
2001-07-04- Update to version 0.7.1Johann Visagie4-3/+24
- Add a build-time message to inform the user of available options. Notes: svn path=/head/; revision=44743
2001-07-04- Add %%PORTDOCS%% support to pkg-plist.Johann Visagie2-3/+3
- $INSTALL_MAN -> $INSTALL_DATA in Makefile where appropriate. PR: 28668 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44742
2001-07-04Add grappa 1.0.2, Genome Rearrangements Analysis and PhylogenyJohann Visagie7-0/+64
Software. PR: 28541 Submitted by: dbader@eece.unm.edu Notes: svn path=/head/; revision=44738
2001-07-04Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportJohann Visagie2-107/+107
it. PR: 28665 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44737
2001-07-03Add %%PORTDOCS%% suppor to pkg-plist.Johann Visagie2-12/+12
Change $PREFIX to $MAN1PREFIX as appropriate in Makefile. PR: 28664 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44707
2001-07-03Add support for %%PORTDOCS%%.Johann Visagie1-42/+42
PR: 28670 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44703
2001-07-03Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.Johann Visagie2-2/+2
PR: 28666 Submitted by: Patrick Li <pat@databits.net> Notes: svn path=/head/; revision=44684
2001-07-03Update to version 3.04Johann Visagie3-5/+5
PR: 28614 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER) Notes: svn path=/head/; revision=44678
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