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2016-12-30biology/diamond: Update to version 0.8.30Joseph Mingrone2-4/+4
2016-12-22biology/ncbi-blast+: Add MAKE_JOBS_UNSAFEJoseph Mingrone1-0/+2
2016-12-20- Update to 1.007001Sunpoet Po-Chuan Hsieh2-4/+4
2016-12-20biology/bowtie2: Update to version 2.2.9Joseph Mingrone2-14/+18
2016-12-20biology/cd-hit: Update to bug-fix release 4.6.6Joseph Mingrone2-5/+4
2016-12-19biology/jellyfish: Update to version 2.2.6Joseph Mingrone3-54/+56
2016-12-19- Update *_DEPENDS: Bio::Coordinate family has been moved from biology/p5-Bio...Sunpoet Po-Chuan Hsieh1-2/+4
2016-12-19- Add p5-Bio-Coordinate 1.007001Sunpoet Po-Chuan Hsieh5-0/+58
2016-12-19- Update to 1.007000Sunpoet Po-Chuan Hsieh4-20/+29
2016-12-19- Update to 1.007001Sunpoet Po-Chuan Hsieh6-383/+180
2016-12-19- Update to 2.5.0Wen Heping5-68/+190
2016-12-18- Update to 2.40Sunpoet Po-Chuan Hsieh3-10/+22
2016-12-18- Move biology/p5-bioperl-run to biology/p5-BioPerl-RunSunpoet Po-Chuan Hsieh6-8/+10
2016-12-18- Add LICENSE_FILESunpoet Po-Chuan Hsieh1-2/+5
2016-12-18- Add LICENSESunpoet Po-Chuan Hsieh1-4/+8
2016-12-18- Add LICENSESunpoet Po-Chuan Hsieh1-1/+7
2016-12-18- Move biology/p5-bioperl to biology/p5-BioPerlSunpoet Po-Chuan Hsieh7-9/+7
2016-12-18biology/diamond: Update to version 0.8.29Joseph Mingrone2-4/+4
2016-12-18biology/protomol: Support build with C++11 (taken from dports)John Marino5-0/+48
2016-12-18biology/blat: Fix build on DF (taken from dports)John Marino1-0/+14
2016-12-18biology/lamarc: Fix build on DF (taken from dports)John Marino1-0/+11
2016-12-18biology/chemeq: fix build on GCC (taken from dports)John Marino1-0/+11
2016-12-08Remove libintl.so.9 compatibility link that was added in r374303 toTijl Coosemans3-2/+3
2016-12-08Remove libjpeg.so.11 compatibility link that was added in r374303 toTijl Coosemans1-0/+1
2016-12-07Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer7-5/+7
2016-12-03biology/molden: distfile was updated in xwin.cKurt Jaeger2-4/+4
2016-12-02Do not use post-stage. Use post-install instead.Mathieu Arnold1-1/+1
2016-11-28biology/njplot: Add site in MASTER_SITES because package builders areJoseph Mingrone1-2/+4
2016-11-28biology/diamond: Update to version 0.8.28Joseph Mingrone2-5/+6
2016-11-26Fixup USE_GITHUB usage.Mathieu Arnold2-3/+3
2016-11-25Replace USE_GCC=4.9+ by USE_GCC=yes, now that lang/gcc and the defaultGerald Pfeifer1-1/+1
2016-11-23devel/boost-*: update to 1.62.0Jan Beich1-0/+1
2016-11-20- Remove unnecessary USES=shebangfixSunpoet Po-Chuan Hsieh1-4/+8
2016-11-20Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer5-2/+5
2016-11-19biology/avida: Fix ncurses from ports supportJohn Marino1-1/+3
2016-11-16biology/njplot: Revive and update to version 2.4Joseph Mingrone5-0/+109
2016-11-11Mark various leaf ports broken on aarch64, and, where appropriate, otherMark Linimon4-2/+8
2016-11-11Attempt to fix build on non-x86 archs.Mark Linimon1-3/+5
2016-11-11biology/seqtools: update 4.43.0 -> 4.44.1Kurt Jaeger3-4/+14
2016-11-10biology/molden: add missing LICENSE_NAMEKurt Jaeger1-1/+2
2016-11-09biology/molden: fix distinfo, set LICENSEKurt Jaeger2-7/+11
2016-11-08The 64-bit arm arch is actually spelled 'aarch64', not 'arm64'.Mark Linimon3-3/+3
2016-11-08Mark as broken on arm64.Mark Linimon1-0/+2
2016-11-08Mark broken on all tier-2 archs.Mark Linimon1-0/+3
2016-11-08Mark broken on the rest of the tier-2 archs: invokes x86 asm.Mark Linimon1-1/+4
2016-11-06biology/diamond: Update to version 0.8.26Joseph Mingrone2-4/+4
2016-11-02Cleanup no longer needed CHMOD usage after r424898.Mathieu Arnold4-12/+5
2016-10-28- Mark it BROKENWen Heping1-1/+3
2016-10-21Use USES=pathfix where applicable.Mathieu Arnold4-21/+11
2016-10-21${RM} already has -f.Mathieu Arnold3-3/+3
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