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2023-03-09all: Bump PORTREVISION after lang/go119 updateDmitri Goutnik5-5/+5
2023-02-17all: Bump PORTREVISION after lang/go119 updateDmitri Goutnik5-3/+5
2022-12-31biology/lamarc: Refactor after wxgtk28 removalMuhammad Moinur Rahman1-7/+7
2022-12-30biology/py-biosig: New port: Library for reading and writing different biosig...Yuri Victorovich4-0/+36
2022-12-30biology/biosig: Update 2.4.3 -> 2.5.0Yuri Victorovich3-5/+53
2022-12-26biology/taxonkit: Update 0.14.0 -> 0.14.1Yuri Victorovich2-7/+6
2022-12-26biology/unikmer: Update 0.19.0 -> 0.19.1Yuri Victorovich2-7/+6
2022-12-25biology/hyphy: Update to 2.5.43Joseph Mingrone2-4/+4
2022-12-22biology/py-pyrodigal: Update 2.0.2 -> 2.0.3Yuri Victorovich2-5/+5
2022-12-19biology/snpeff: Update to 5.1Jason W. Bacon2-4/+4
2022-12-19biology/pooler: update to 1.86Silas S. Brown2-4/+5
2022-12-13biology/biolibc-tools: Update to 0.1.4.1Jason W. Bacon2-4/+5
2022-12-12biology/biolibc-tools: Update to 0.1.4Jason W. Bacon3-5/+6
2022-12-12biology/rna-seq: Metaport for RNA-Seq analysisJason W. Bacon4-0/+30
2022-12-12biology/fasda: Fast and simple differential analysisJason W. Bacon5-0/+44
2022-12-11biology/fastq-trim: Update to 0.1.2Jason W. Bacon3-7/+10
2022-12-11biology/vcf-split: Update to 0.1.5-4Jason W. Bacon2-4/+5
2022-12-11biology/peak-classifier: Update to 0.1.4-5Jason W. Bacon3-5/+5
2022-12-11biology/biolibc: Update to 0.2.4Jason W. Bacon2-4/+4
2022-12-11all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik5-4/+5
2022-12-10biology/cytoscape: Broken on armv6, armv7Yuri Victorovich1-0/+3
2022-12-10biology/metaeuk: Fix build on systems withour OpenMP enabledYuri Victorovich1-4/+4
2022-12-08biology/libcombine: Update 0.2.19 -> 0.2.20Yuri Victorovich3-10/+10
2022-12-06biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich4-0/+50
2022-12-06Revert: "all: deprecate ports depending on expired security/py-keyrings.alt"Rene Ladan2-6/+0
2022-12-05biology/py-biopython: Update to 1.80Wen Heping2-5/+5
2022-12-02biology/metaeuk: Broken on systems where OpenMP isn't enabledYuri Victorovich1-0/+4
2022-12-01biology/metaeuk: append missing bracketPiotr Kubaj1-1/+1
2022-12-01biology/metaeuk: fix build without libomp and disable -m{arch,cpu}=nativePiotr Kubaj1-0/+7
2022-11-29biology/taxonkit: Update 0.13.0 -> 0.14.0Yuri Victorovich2-7/+6
2022-11-27*/*: bump PORTREVISION after the upgrade of math/suitesparse*Thierry Thomas1-1/+1
2022-11-26biology/gatk: Update 4.2.6.1 -> 4.3.0.0Yuri Victorovich2-8/+6
2022-11-26biology/cytoscape: Fix buildYuri Victorovich1-1/+1
2022-11-26biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich4-0/+47
2022-11-25biology/augustus: New port: Genome annotation toolYuri Victorovich7-0/+1619
2022-11-24biology/barrnap: Update descrYuri Victorovich1-6/+8
2022-11-24biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich5-0/+47
2022-11-24biology/cytoscape: Unbreak by re-adding and using maven-3.6.3Yuri Victorovich1-2/+0
2022-11-24biology/megahit: Add cmake patch to respect ports build flagsJason W. Bacon2-0/+18
2022-11-22biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon5-0/+45
2022-11-17graphics/proj: Update to 9.1.0Loïc Bartoletti1-0/+1
2022-11-12biology/paml: Update to 4.10.6Joseph Mingrone3-15/+6
2022-11-10biology/py-pysam: Update 0.19.1 -> 0.20.0Yuri Victorovich2-11/+12
2022-11-09biology/bowtie2: fix build on powerpc64*Piotr Kubaj1-2/+2
2022-11-04biology/bowtie2: Update to 2.5.0Jason W. Bacon3-8/+12
2022-10-26biology/biosig: Make sure __LITTLE_ENDIAN is defined in include files.Stephen Montgomery-Smith2-4/+8
2022-10-22*/*: Bump PORTREVISION for consumers of libunistringDaniel Engberg1-1/+1
2022-10-21biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich7-0/+119
2022-10-12biology/tRNAscan-SE: Update to 2.0.11Motomichi Matsuzaki4-10/+14
2022-10-12biology/infernal: Update to 1.1.4Motomichi Matsuzaki4-41/+11
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