summaryrefslogtreecommitdiff
path: root/biology (unfollow)
Commit message (Collapse)AuthorFilesLines
2007-03-27- Update to 1.5-beta2Martin Wilke3-13/+14
- Pass maintainership to submitter PR: 110621 Submitted by: Nemo Liu<nemoliu@gmail.com> Notes: svn path=/head/; revision=188470
2007-03-16- MASTER_SITE is back, remove BROKENGabor Kovesdan1-2/+0
PR: ports/109954 Submitted by: Tsurutani Naoki <turutani@scphys.kyoto-u.ac.jp> Notes: svn path=/head/; revision=187549
2007-03-14Reset razi@genet.sickkids.on.ca due to maintainer-timeouts and no response toMark Linimon1-1/+1
email. Hat: portmgr Notes: svn path=/head/; revision=187365
2007-03-11Reset dbader@eece.unm.edu due to maintainer-timeouts.Mark Linimon1-1/+1
Hat: portmgr Notes: svn path=/head/; revision=187091
2007-03-11Reset dbader@eece.unm.edu due to maintainer-timeout. While here, fix fetch.Mark Linimon1-2/+2
Notes: svn path=/head/; revision=187090
2007-03-10Reset chuynh@biolateral.com.au: address bounces.Mark Linimon2-2/+2
Hat: portmgr Notes: svn path=/head/; revision=187072
2007-03-09- Update to 4.96Martin Wilke3-10/+143
PR: 110080 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=186994
2007-03-09- Update to 34.26.2Martin Wilke2-8/+6
PR: 110079 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=186993
2007-03-08- Release distfile was renamed.Martin Wilke2-5/+5
PR: 110078 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=186894
2007-02-27BROKEN: UnfetchableKris Kennaway1-0/+2
Notes: svn path=/head/; revision=186074
2007-02-19- mark ignore on FreeBSD 5.xDirk Meyer1-1/+7
Approved by: maintainer Notes: svn path=/head/; revision=185488
2007-02-11Schedule these broken ports for removal on 2007-04-10 if they are stillKris Kennaway1-0/+2
broken at that time and no fix has been submitted. Notes: svn path=/head/; revision=184837
2007-02-09Update to 0.99rc6.Maho Nakata2-5/+5
PR: 108940 Submitted by: CHAO Shin Notes: svn path=/head/; revision=184650
2007-02-05BROKEN: Does not buildKris Kennaway1-0/+2
Notes: svn path=/head/; revision=184205
2007-02-01Use libtool port instead of included version to avoid objformat a.out botchKris Kennaway1-0/+1
Notes: svn path=/head/; revision=183830
2007-01-31- add category gnustepDirk Meyer2-2/+2
PR: 103931 Approved by: pav Notes: svn path=/head/; revision=183799
2007-01-29Build fix.Maho Nakata1-1/+2
Submitted by: kris via pointyhat and pav. Notes: svn path=/head/; revision=183588
2007-01-27Update to 3.66Ion-Mihai Tetcu2-4/+4
PR: ports/108434 Submitted by: Marcelo Araujo Notes: svn path=/head/; revision=183435
2007-01-25Fix master sites, un-deprecate and update biology/recombine to 1.41.Vasil Dimov4-86/+19
Notes: svn path=/head/; revision=183251
2007-01-25Remove expired leaf port:Vasil Dimov6-78/+0
2007-01-07 biology/coalesce: distfile disappeared from homepage Actually the software is still available at: http://evolution.gs.washington.edu/lamarc/coalesce.html, but it is not supported by the authors. Last version is from 1995 and biology/fluctuate can be used instead. Notes: svn path=/head/; revision=183249
2007-01-25Get rid of biology/coalesce dependency, it is deprecated and will be removedVasil Dimov1-2/+2
shortly. Notes: svn path=/head/; revision=183248
2007-01-25Fix master site and un-deprecateVasil Dimov1-4/+1
Notes: svn path=/head/; revision=183246
2007-01-23- Fix typoMartin Wilke1-1/+1
Notes: svn path=/head/; revision=183075
2007-01-22- Project moves to a new home. Change MASTER_SITES and WWWRong-En Fan2-2/+2
PR: ports/108214 Submitted by: Thomas Abthorpe <thomas at goodking.ca> Approved by: Fernan Aguero <fernan at iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=183029
2007-01-19Fix build.Maho Nakata1-1/+1
Submitted by: kris via pointyhat. Notes: svn path=/head/; revision=182781
2007-01-19Forgot to commit a patch. Fixes build.Maho Nakata1-0/+20
Submitted by: kris via pointyhat. Notes: svn path=/head/; revision=182769
2007-01-17* Migrate to gfortran.Maho Nakata2-13/+11
* Bump port revision. Notes: svn path=/head/; revision=182584
2007-01-16. change dependencies: shells/bash2 -> shells/bash;Boris Samorodov1-1/+2
. bump PORTREVISION (RUN_DEPENDS changes); . for converters/konwert: - introduce PATCHLEVEL to be used instead of PORTREVISION at filenames; - update to new PATCHLEVEL=11. PR: 107000 [1], 107046 [2], 107106 [3], 107114 [4] Submitted by: bsam (me) Approved by: all maintainers timeout three and a half week: mij at bitchx.it [1] j.koopmann at seceidos.de [2] chuynh at biolateral.com.au [3] alexs at snark.rinet.ru [4] Notes: svn path=/head/; revision=182531
2007-01-16* Migrate to gfortran.Maho Nakata1-5/+4
* Bump port revision. * fix build [1]. Submitted by: kris [1] Notes: svn path=/head/; revision=182485
2007-01-13- update to use new bsd.gnustep.mkDirk Meyer1-4/+3
Approved by: gurkan@linuks.mine.nu Notes: svn path=/head/; revision=182275
2007-01-12* Migrate to gfortran.Maho Nakata2-2/+7
* Bump port revision. Notes: svn path=/head/; revision=182197
2007-01-12Using gfortran42 only. not using gcc42.Maho Nakata1-3/+5
Bump portrevision. Notes: svn path=/head/; revision=182137
2007-01-12Using only gfortran42. not gcc42.Maho Nakata2-6/+10
Bump portrevision. Notes: svn path=/head/; revision=182136
2007-01-09* Add dummy knob WANT_FORTRAN for future gfortranMaho Nakata2-127/+147
migration. currently it is not buildable with gfrotran42. * Honor FC and FFLAGS. Notes: svn path=/head/; revision=181827
2007-01-09migrated to gfortran.Maho Nakata1-0/+3
Notes: svn path=/head/; revision=181823
2007-01-09Migrated to gfortran.Maho Nakata3-6/+13
Notes: svn path=/head/; revision=181822
2006-12-30The BioCocoa framework provides developers with the opportunity to addDirk Meyer5-0/+45
support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE, Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT files by writing only three lines of code. The framework is written in Cocoa (Objective-C). WWW: http://bioinformatics.org/biococoa/ Notes: svn path=/head/; revision=181036
2006-12-29- Update to 1.0.1Martin Wilke3-97/+98
- Update MASTER_SITES - Pass maintainership to submitter PR: ports/107246 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=181012
2006-12-27Update to v0.15Aaron Dalton3-40/+40
Notes: svn path=/head/; revision=180879
2006-12-26Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no responseMark Linimon5-5/+5
to email. Hat: portmgr Notes: svn path=/head/; revision=180796
2006-12-23- Update to 5.1.2Martin Wilke11-236/+308
- Update maintainer mail adresse PR: ports/107118 Submitted by: M. L. Dodson <bdodson@houston.rr.com> (maintainer) Notes: svn path=/head/; revision=180626
2006-12-19- Update to 1.03Rong-En Fan3-105/+42
PR: ports/106300 Submitted by: chinsan Approved by: maintainer timeout (15 days) Notes: svn path=/head/; revision=180115
2006-12-13Reset dbader@ece.unm.edu due to timeouts and no response to email.Mark Linimon2-2/+2
Hat: portmgr Notes: svn path=/head/; revision=179659
2006-12-13Reset whitekid@gmail.com after timeouts and no response to email.Mark Linimon1-1/+1
Hat: portmgr Notes: svn path=/head/; revision=179658
2006-12-10- Update to 2.1.3Gabor Kovesdan4-33/+19
- Fix fetching - Remove old patch and use MAKE_ARGS instead - portlint(1) and whitespace Approved by: erwin (mentor) Notes: svn path=/head/; revision=179374
2006-12-10- DeprecateGabor Kovesdan3-0/+9
- Set EXPIRATION_DATE Approved by: erwin (mentor) Notes: svn path=/head/; revision=179373
2006-12-09- Local/Tools/Resources now globalDirk Meyer1-1/+0
Notes: svn path=/head/; revision=179271
2006-12-09- Respect X11BASERong-En Fan1-0/+5
Approved by: portmgr (linimon) Notes: svn path=/head/; revision=179256
2006-12-07- Update to 0.14Frank J. Laszlo4-56/+48
Submitted by: Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw> Approved by: maintainer timeout (3 months) Notes: svn path=/head/; revision=179121
2006-12-04- Mark broken on amd64 < 6. We got followingRong-En Fan1-0/+4
cc -O -pipe -fPIC -g -Wall -DACEDB4 -I. -I./wh -DFREEBSD -c -O -pipe -fPIC -g -Wall -DACEDB4 -c arraysub.c arraysub.c: In function `stackused': arraysub.c:54: error: unrecognizable insn: (insn 44 22 24 2 arraysub.c:53 (set (reg:SI 1 dx [66]) (subreg:SI (plus:DI (subreg:DI (reg:SI 7 sp) 0) (const_int -1 [0xffffffffffffffff])) 0)) -1 (nil) (nil)) arraysub.c:54: internal compiler error: in extract_insn, at recog.c:2083 Reported by: pointyhat via kris Approved by: Philip M. Gollucci (maintainer) Notes: svn path=/head/; revision=178800
generated by cgit v1.2.3 (git 2.25.1) at 2024-07-19 18:47:08 +0000