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2022-10-08all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik5-3/+5
2022-10-01biology/hyphy: Not broken on systems where OpenMP isn't availableYuri Victorovich1-4/+0
2022-10-01biology/hyphy: Add tests; Fix ONLY_FOR_ARCHS orderYuri Victorovich1-2/+5
2022-10-01biology/hhsuite: fix build on armv7Robert Clausecker2-2/+11
2022-09-30all: deprecate ports depending on expired security/py-keyrings.altRene Ladan2-0/+6
2022-09-26biology/py-PySCeS: Update 1.0.2 -> 1.0.3Yuri Victorovich3-26/+13
2022-09-24biology/seqkit: Update 2.3.0 -> 2.3.1Yuri Victorovich2-7/+6
2022-09-24biology/taxonkit: Update 0.12.0 -> 0.13.0Yuri Victorovich2-7/+6
2022-09-24biology/py-mrcfile: Update 1.4.2 -> 1.4.3Yuri Victorovich2-4/+4
2022-09-21biology/vsearch: Update to 2.22.1Jason W. Bacon2-4/+4
2022-09-19biology/hyphy: Update to 2.5.42Joseph Mingrone2-4/+4
2022-09-16biology/vsearch: Update to 2.21.2Jason W. Bacon2-4/+4
2022-09-11Mk/Uses: always use colon for build/run suffixFelix Palmen2-3/+3
2022-09-09biology/hhsuite: Broken on armv7Yuri Victorovich1-0/+2
2022-09-09*/*: Update path set in BUILD_DEPENDS for CMakeDaniel Engberg1-1/+1
2022-09-08all: Bump PORTREVISION after lang/go{118,119} updateDmitri Goutnik5-3/+5
2022-09-08Remove WWW lines that have been moved into MakefilesStefan Eßer2-4/+0
2022-09-08Move more WWW entries from pkg-descr files into MakefilesStefan Eßer2-0/+2
2022-09-07Remove WWW entries moved into port MakefilesStefan Eßer226-453/+3
2022-09-07Add WWW entries to port MakefilesStefan Eßer226-0/+226
2022-09-07cleanup: remove trailing whitepacesTobias C. Berner1-1/+1
2022-09-04biology/seqkit: Update 2.2.0 -> 2.3.0Yuri Victorovich2-7/+6
2022-09-02biology/phyml: Update to 3.3.20220408Wen Heping2-4/+4
2022-08-27biology/figtree: Update 1.4.4 -> 1.4.4-14Yuri Victorovich2-4/+7
2022-08-26biology/paml: Update to 4.10.5Joseph Mingrone4-41/+39
2022-08-18biology/kmcp: Update 0.8.3 -> 0.8.4Yuri Victorovich2-6/+6
2022-08-15biology/kmcp: Update 0.8.2 -> 0.8.3Yuri Victorovich2-120/+7
2022-08-14biology/kmcp: Broken on i386 and arm64Yuri Victorovich1-0/+3
2022-08-13*: bump PORTREVISION of all devel/xxhash users...Matthias Andree1-0/+1
2022-08-12*/*: bump all consumers after recent boost upgradeDima Panov11-9/+11
2022-08-11biology/gatk: mark BROKENDmitry Marakasov1-0/+1
2022-08-07biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale ge...Yuri Victorovich4-0/+140
2022-08-06biology/ncbi-cxx-toolkit: Broken on armv6Yuri Victorovich1-0/+2
2022-08-06biology/hyphy: Update 2.5.40 -> 2.5.41Yuri Victorovich2-5/+5
2022-08-06biology/py-ete3: Add testsYuri Victorovich1-2/+3
2022-08-04biology/ugene: Correct BROKEN messageYuri Victorovich1-5/+3
2022-08-04biology/hyphy: Correct BROKEN messageYuri Victorovich1-1/+1
2022-08-04biology/hhsuite: Fix build on some architecturesYuri Victorovich1-0/+32
2022-08-04biology/hhsuite: Revert commit "Broken on systems where OpenMP isn't enabled"Yuri Victorovich1-4/+0
2022-08-04biology/ugene: Broken on systems where OpenMP isn't enabledYuri Victorovich1-0/+3
2022-08-04biology/hhsuite: Broken on systems where OpenMP isn't enabledYuri Victorovich1-0/+4
2022-08-04biology/hyphy: Broken on systems where OpenMP isn't enabledYuri Victorovich1-0/+4
2022-08-03all: Bump PORTREVISION after Go updateDmitri Goutnik4-4/+4
2022-07-31biology/viennarna: Update 2.5.0 -> 2.5.1Yuri Victorovich3-6/+8
2022-07-30biology/abyss: Add test targetYuri Victorovich1-0/+2
2022-07-30devel/grpc: Update to 1.48.0Po-Chuan Hsieh1-1/+1
2022-07-29biology/abyss: Update 2.3.1 -> 2.3.5Yuri Victorovich5-13/+22
2022-07-29biology/py-mrcfile: Update 1.4.0 -> 1.4.2Yuri Victorovich2-4/+5
2022-07-27biology/cufflinks: UnbreakYuri Victorovich8-3/+137
2022-07-23biology/star: Broken on systems where OpenMP isn't enabledYuri Victorovich1-0/+3
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