| Commit message (Collapse) | Author | Age | Files | Lines |
|
|
|
|
|
|
|
|
|
| |
Commit b7f05445c00f has added WWW entries to port Makefiles based on
WWW: lines in pkg-descr files.
This commit removes the WWW: lines of moved-over URLs from these
pkg-descr files.
Approved by: portmgr (tcberner)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
It has been common practice to have one or more URLs at the end of the
ports' pkg-descr files, one per line and prefixed with "WWW:". These
URLs should point at a project website or other relevant resources.
Access to these URLs required processing of the pkg-descr files, and
they have often become stale over time. If more than one such URL was
present in a pkg-descr file, only the first one was tarnsfered into
the port INDEX, but for many ports only the last line did contain the
port specific URL to further information.
There have been several proposals to make a project URL available as
a macro in the ports' Makefiles, over time.
This commit implements such a proposal and moves one of the WWW: entries
of each pkg-descr file into the respective port's Makefile. A heuristic
attempts to identify the most relevant URL in case there is more than
one WWW: entry in some pkg-descr file. URLs that are not moved into the
Makefile are prefixed with "See also:" instead of "WWW:" in the pkg-descr
files in order to preserve them.
There are 1256 ports that had no WWW: entries in pkg-descr files. These
ports will not be touched in this commit.
The portlint port has been adjusted to expect a WWW entry in each port
Makefile, and to flag any remaining "WWW:" lines in pkg-descr files as
deprecated.
Approved by: portmgr (tcberner)
|
|
|
|
|
| |
PR: 265245
Approved by: jmd@ (maintainer)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
A big Thank You to the original contributors of these ports:
* Aaron Dalton <aaron@FreeBSD.org>
* Akinori MUSHA aka knu <knu@idaemons.org>
* Andrey Zakhvatov
* Bob Zimmermann <rpz@cse.wustl.edu>
* Camson Huynh <chuynh@biolateral.com.au>
* Dan Siercks <dsiercks@uwm.edu>
* Fernan Aguero <fernan@iib.unsam.edu.ar>
* Hannes Hauswedell <h2+fbsdports@fsfe.org>
* J. Bacon <jwb@FreeBSD.org>
* Jason Bacon <jwb@FreeBSD.org>
* Jeremy <karlj000@unbc.ca>
* Johann Visagie <johann@egenetics.com>
* Johann Visagie <wjv@FreeBSD.org>
* Mauricio Herrera Cuadra <mauricio@arareko.net>
* Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
* Motomichi Matsuzaki <mzaki@niid.go.jp>
* Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Razi Khaja <razi@genet.sickkids.on.ca>
* Reed A. Cartwright <cartwright@asu.edu>
* Ryo MIYAMOTO
* Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* Sangwoo Shim <sangwoos@gmail.com>
* Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>
* Tassilo Philipp <tphilipp@potion-studios.com>
* Tony Maher
* Tony Maher <tonym@biolateral.com.au>
* Wen Heping <wen@FreeBSD.org>
* Wen Heping <wenheping@gmail.com>
* Yonatan <onatan@gmail.com>
* Yuri Victorovich <yuri@rawbw.com>
* ballen
* barnhart@genetics.wustl.edu
* camson@bilateral.com.au
* chuynh@biolateral.com.au
* dbader@eece.unm.edu
* frankch@waru.life.nthu.edu.tw
* h2
* lentferj
* maho@FreeBSD.org
* mzaki@biol.s.u-tokyo.ac.jp
* tonym
* wen@FreeBSD.org
With hat: portmgr
|
|
|
|
|
|
|
|
|
|
| |
For unbreak:
- pass FFLAGS to the build
- fix several errors in C
- remove the failing 'ex' command from makefile
Reported by: fallout
Approved by: portmgr (unbreak)
|
|
|
|
|
|
|
| |
- Fix typos
- Fix overwritten variables
Reported by: portscan
|
|
|
|
|
| |
PR: 238858
Reported by: yuri@
|
|
|
|
|
|
|
|
|
|
| |
Per discussion with bapt on helping pkg handle the changing of these
deps and avoiding impossible upgrade senarios.
PR: 246767
Reviewed by: manu, bapt
Approved by: x11
Differential Revision: https://reviews.freebsd.org/D30824
|
|
|
|
|
|
|
|
| |
For ports that already use the licenses framwork, merge the content of
RESTRICTED/NO_CDROM/LEGAL* entries into LICENSEs.
Approved by: rene
Differential Revision: https://reviews.freebsd.org/D30010
|
| |
|
|
|
|
| |
Notes:
svn path=/head/; revision=569522
|
|
|
|
|
|
|
|
| |
Add USES=xorg, USES=gl and in a few cases USES=gnome to ports in categories
starting with 'b'.
Notes:
svn path=/head/; revision=516742
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3
to GCC 9.1 under most circumstances now after revision 507371.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, everything INDEX-11 shows with a dependency on lang/gcc9 now.
PR: 238330
Notes:
svn path=/head/; revision=507372
|
|
|
|
|
|
|
|
|
|
| |
benefit from the improved situation where libgcc_s is only used when
absolutely necessary.
Suggested by: tijl
Notes:
svn path=/head/; revision=499638
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t
GCC 8.2 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang,
c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib
plus, as a double check, everything INDEX-11 showed depending on lang/gcc7.
PR: 231590
Notes:
svn path=/head/; revision=487272
|
|
|
|
|
|
|
|
|
|
| |
Also add do-install-{option}-on targets and shadow ${MKDIR} commands.
PR: 233060
Submitted by: yuri
Notes:
svn path=/head/; revision=484858
|
|
|
|
|
|
|
|
|
|
| |
Add $(LDFLAGS) to makefile.
While here, add USES=gl.
Approved by: portmgr
Notes:
svn path=/head/; revision=484371
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.
This includes ports
- featuring USE_GCC=yes or USE_GCC=any,
- featuring USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and those
- with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.
PR: 222542
Notes:
svn path=/head/; revision=475857
|
|
|
|
|
|
|
| |
The upstream keeps changing the URL.
Notes:
svn path=/head/; revision=475001
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
Notes:
svn path=/head/; revision=474994
|
|
|
|
| |
Notes:
svn path=/head/; revision=474570
|
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
MFH: 2018Q3
Notes:
svn path=/head/; revision=474562
|
|
|
|
|
|
|
|
|
| |
Reviewed by: zeising (mentor)
Approved by: zeising (mentor)
Differential Revision: https://reviews.freebsd.org/D15333
Notes:
svn path=/head/; revision=470488
|
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
MFH: 2018Q2
Notes:
svn path=/head/; revision=469265
|
|
|
|
|
|
|
| |
version 1.1.0 (via revision 464079).
Notes:
svn path=/head/; revision=464084
|
|
|
|
|
|
|
|
|
| |
Reviewed by: swills (mentor), mat
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D12829
Notes:
svn path=/head/; revision=453261
|
|
|
|
|
|
|
|
|
| |
Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D12521
Notes:
svn path=/head/; revision=450799
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
(via Mk/bsd.default-versions.mk and lang/gcc) which has moved from
GCC 5.4 to GCC 6.4 under most circumstances.
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using Mk/bsd.octave.mk which in turn features USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang,
c++14-lang, c++0x, c11, or gcc-c++11-lib.
PR: 219275
Notes:
svn path=/head/; revision=449591
|
|
|
|
|
|
|
|
|
|
|
| |
to host a distfile copy.
Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D11586
Notes:
svn path=/head/; revision=445717
|
|
|
|
|
|
|
|
|
|
|
| |
distribution.
Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D11338
Notes:
svn path=/head/; revision=445570
|
|
|
|
|
|
|
|
|
|
|
| |
=> Attempting to fetch ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz
fetch: ftp://ftp.cmbi.ru.nl/pub/molgraph/molden/molden5.7.tar.gz: size mismatch: expected 5339411, actual 5339467
=> Couldn't fetch it - please try to retrieve this
Sponsored by: Absolight
Notes:
svn path=/head/; revision=444104
|
|
|
|
|
|
|
| |
Reported by: xmj
Notes:
svn path=/head/; revision=442480
|
|
|
|
|
|
|
|
|
| |
Reviewed by: swills (mentor)
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D10864
Notes:
svn path=/head/; revision=441560
|
|
|
|
|
|
|
|
| |
Approved by: swills (mentor)
Differential Revision: https://reviews.freebsd.org/D10845
Notes:
svn path=/head/; revision=441503
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
Notes:
svn path=/head/; revision=441258
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).
This includes ports
- with USE_GCC=yes or USE_GCC=any,
- with USES=fortran,
- using using Mk/bsd.octave.mk which in turn has USES=fortran, and
- with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
c++11-lang, c++0x, c11, or gcc-c++11-lib.
PR: 216707
Notes:
svn path=/head/; revision=437439
|
|
|
|
|
|
|
|
|
| |
Reviewed by: swills (mentor), pi (former maintainer)
Approved by: swills (mentor), pi (former maintainer)
Differential Revision: https://reviews.freebsd.org/D9501
Notes:
svn path=/head/; revision=433832
|
|
|
|
|
|
|
| |
Approved by: portmgr blanket
Notes:
svn path=/head/; revision=433554
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some
circumstances such as versions of FreeBSD or platforms), part II.
The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of
gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang,
c++11-lang, c++0x, c11 requested via USES=compiler.
This adds ports with USES=fortran and ports using Mk/bsd.octave.mk
which in turn has USES=fortran.
PR: 214965
Reported by: thierry
Notes:
svn path=/head/; revision=428057
|
|
|
|
| |
Notes:
svn path=/head/; revision=427627
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
Notes:
svn path=/head/; revision=425830
|
|
|
|
|
|
|
|
|
| |
Submitted by: marino
Reported by: Eduardo Lemos de Sa <eduardo.lemosdesa@gmail.com>
MFH: 2016Q4
Notes:
svn path=/head/; revision=425806
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
Notes:
svn path=/head/; revision=423039
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
- Adds editable text fields that are longer than the visible string
and introduces a new way of selecting a range of amino acids.
- introduces interfaces to the open source packages openbabel and pharmer.
Openbabel is used to create 2D images of the molecules in a .sdf
file. It is also used to do 2D fingerprint searching.
Pharmer is used to pharmacophore (3D) searching against indexed
databases of .sdf files.
Notes:
svn path=/head/; revision=420890
|
|
|
|
|
|
|
| |
Approved by: portmgr blanket
Notes:
svn path=/head/; revision=420601
|
|
|
|
|
|
|
| |
Approved by: portmgr blanket
Notes:
svn path=/head/; revision=415498
|
|
|
|
|
|
|
|
|
| |
- upstream distfile is moving target with same version number
Submitted by: antoine
Notes:
svn path=/head/; revision=406795
|
|
|
|
|
|
|
| |
Reported by: pkg-fallout
Notes:
svn path=/head/; revision=406791
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
Changes:
- Missing hydrogens atoms of HETATM molecules (pdb files) are stored locally.
- Pdb files can now be clipped.
- Fixes missing residues. Introduces an alternative way of generating rotamers,
without using z-matrices. This potentially a faster algorithm.
- Supports Movie making through avconv/ffmpeg.
- calculates the Electron Localization Function (ELF).
- Updated code of ambfor/ambmd to speed up optimisations/MD of proteins
solvated in water (Jan, 2014).
PR: 204341
Notes:
svn path=/head/; revision=406605
|
|
|
|
|
|
|
|
|
|
|
|
|
| |
to GCC 4.8.3.
Part II, Bump PORTREVISIONs.
PR: 192025
Tested by: antoine (-exp runs)
Approved by: portmgr (implicit)
Notes:
svn path=/head/; revision=367888
|