diff options
Diffstat (limited to 'science')
25 files changed, 0 insertions, 806 deletions
diff --git a/science/Makefile b/science/Makefile index 912ecbff097b..f5a105389c6f 100644 --- a/science/Makefile +++ b/science/Makefile @@ -46,18 +46,15 @@ SUBDIR += elmergrid SUBDIR += elmerpost SUBDIR += epte - SUBDIR += euler SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fisicalab - SUBDIR += flounder SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += fvm SUBDIR += g3data SUBDIR += gamess SUBDIR += gchemutils - SUBDIR += gdis SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm diff --git a/science/euler/Makefile b/science/euler/Makefile deleted file mode 100644 index 3ea6e02887ee..000000000000 --- a/science/euler/Makefile +++ /dev/null @@ -1,41 +0,0 @@ -# Created by: ijliao -# $FreeBSD$ - -PORTNAME= euler -PORTVERSION= 1.61.0 -PORTREVISION= 7 -CATEGORIES= science -MASTER_SITES= SF/${PORTNAME}/${PORTNAME}/${PORTNAME}-1.61 -EXTRACT_SUFX= .tgz - -MAINTAINER= ports@FreeBSD.org -COMMENT= Program computes with real and complex numbers and matrices - -LICENSE= GPLv2 - -DEPRECATED= Unmaintained since 2002 -EXPIRATION_DATE= 2014-04-17 -USES= pkgconfig -USE_GNOME= gtk20 -GNU_CONFIGURE= yes - -NO_STAGE= yes -.include <bsd.port.pre.mk> - -post-patch: - @${REINPLACE_CMD} -e '/^SUBDIRS/s|docs||g ; \ - /^install-data-am/s|install-eulerdocDATA||g' ${WRKSRC}/Makefile.in - @${REINPLACE_CMD} -e '/^AM_CFLAGS/d ; \ - /-Wall/d ; \ - /-O3/d' ${WRKSRC}/src/Makefile.in - -post-install: -.if ${PORT_OPTIONS:MDOCS} - @${MKDIR} ${DOCSDIR} - cd ${WRKSRC}/docs && ${FIND} . ! -name "*Makefile*" | \ - ${CPIO} -pdm -L -R ${SHAREOWN}:${SHAREGRP} ${DOCSDIR} - @${FIND} ${DOCSDIR} -type f | ${XARGS} ${CHMOD} ${SHAREMODE} - @${FIND} ${DOCSDIR} -type d | ${XARGS} ${CHMOD} ${BINMODE} -.endif - -.include <bsd.port.post.mk> diff --git a/science/euler/distinfo b/science/euler/distinfo deleted file mode 100644 index 3146d703f2bb..000000000000 --- a/science/euler/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (euler-1.61.0.tgz) = 1350a3ded26fa8bab2580a1dc3a689aabbb100b872df62819327282773e02d95 -SIZE (euler-1.61.0.tgz) = 1202485 diff --git a/science/euler/files/patch-src__command.c b/science/euler/files/patch-src__command.c deleted file mode 100644 index 62f4817a1983..000000000000 --- a/science/euler/files/patch-src__command.c +++ /dev/null @@ -1,11 +0,0 @@ ---- src/command.c.orig Mon Oct 24 09:38:24 2005 -+++ src/command.c Sun May 27 14:08:14 2007 -@@ -732,7 +732,7 @@ - } - - --static int command_count; -+int command_count; - - commandtyp command_list[] = { - {"quit",c_quit,do_quit}, diff --git a/science/euler/files/patch-src__main.c b/science/euler/files/patch-src__main.c deleted file mode 100644 index a4c0c4b0fc4a..000000000000 --- a/science/euler/files/patch-src__main.c +++ /dev/null @@ -1,95 +0,0 @@ ---- src/main.c.orig Mon Oct 31 07:54:17 2005 -+++ src/main.c Mon Oct 31 23:53:19 2005 -@@ -1229,9 +1229,9 @@ - - static void overwrite_yes_cb(GtkWidget *widget, gpointer data) - { -- destroy_yesno_dialog(widget); -- - char *filename = get_filename(data, ".en"); -+ -+ destroy_yesno_dialog(widget); - - if (!gtk_term_save(term,filename)) { - char *txt = g_strdup_printf("\nI could not save the notebook to the file\n%s\n",filename); -@@ -1262,9 +1262,9 @@ - - static void overwrite_yes_open_cb(GtkWidget *widget, gpointer data) - { -- destroy_yesno_dialog(widget); -- - char *filename = get_filename(data, ".en"); -+ -+ destroy_yesno_dialog(widget); - - if (gtk_term_save(term,filename)) { - gtk_widget_destroy((GtkWidget*)data); -@@ -1318,9 +1318,9 @@ - - static void overwrite_yes_quit_cb(GtkWidget *widget, gpointer data) - { -- destroy_yesno_dialog(widget); -- - char *filename = get_filename(data, ".en"); -+ -+ destroy_yesno_dialog(widget); - - if (gtk_term_save(term,filename)){ - gtk_widget_destroy((GtkWidget*)data); -@@ -1763,8 +1763,8 @@ - { - GtkTerm *t = GTK_TERM(term); - if (t->editing) { -- if (!strlen(efname)) return; - char *text = g_strdup_printf("load \"%s\"", efname); -+ if (!strlen(efname)) return; - - if (t->pos<=e_get_text_length(t->a,t->cur)) - e_remove_text(t->a,t->cur,1,e_get_text_length(t->a,t->cur)-1); -@@ -1780,11 +1780,6 @@ - - static void editor(void) - { -- if (editordialog) { -- gdk_window_raise(editordialog->window); -- return; -- } -- - GtkWidget *vbox; - GtkWidget *toolbar; - GtkWidget *button; -@@ -1796,6 +1791,11 @@ - PangoFontDescription *pfd; - GtkIconSize tmp_toolbar_icon_size; - -+ if (editordialog) { -+ gdk_window_raise(editordialog->window); -+ return; -+ } -+ - editordialog = gtk_window_new (GTK_WINDOW_TOPLEVEL); - // gtk_window_set_transient_for(GTK_WINDOW(editordialog),GTK_WINDOW(term_window)); - // gtk_window_set_modal(GTK_WINDOW(editordialog),TRUE); -@@ -2002,8 +2002,9 @@ - - static void overwrite_yes_dndopen_cb(GtkWidget *widget, gpointer data) - { -- destroy_yesno_dialog(widget); - char *filename = get_filename(data, ".en"); -+ -+ destroy_yesno_dialog(widget); - - if (gtk_term_save(term,filename)) { - gtk_widget_destroy((GtkWidget*)data); -@@ -2325,9 +2326,9 @@ - - static void no_demo_cb(GtkWidget *widget, gpointer data) - { -- destroy_yesno_dialog(widget); -- - gchar *s; -+ -+ destroy_yesno_dialog(widget); - s = g_strconcat(INSTALL_DIR,"/share/euler/progs/",demo_name,NULL); - gtk_term_load(term,s); - g_free(s); diff --git a/science/euler/pkg-descr b/science/euler/pkg-descr deleted file mode 100644 index 36edd6b9998d..000000000000 --- a/science/euler/pkg-descr +++ /dev/null @@ -1,24 +0,0 @@ -EULER is a program for quickly and interactively computing with real and -complex numbers and matrices, or with intervals, in the style of MatLab, -Octave,... It can draw and animate your functions in two and three dimensions. -It features: - - real, complex and interval scalars and matrices, - - a programming language, with local variables, default values for - parameters, variable parameter number, passing of functions, - - two and three dimensional graphs, - - marker plots, - - density and contour plots, - - animations, - - numerical integration and differentiation, - - statistical functions and tests, - - differential equations, - - interval methods with guaranteed inclusions, - - function minimizers (Brent, Nelder-Mean), - - Simplex algorithm, - - interpolation and approximation, - - finding roots of polynomials, - - Fast Fourier transform (FFT), - - An exact scalar product using a long accumulator, - - Postscript graphics export - -WWW: http://euler.sourceforge.net/ diff --git a/science/euler/pkg-plist b/science/euler/pkg-plist deleted file mode 100644 index 0fa37fd9a612..000000000000 --- a/science/euler/pkg-plist +++ /dev/null @@ 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-%%PORTDOCS%%%%DOCSDIR%%/german/images/euler.css -%%PORTDOCS%%%%DOCSDIR%%/german/images/fcd.gif -%%PORTDOCS%%%%DOCSDIR%%/german/images/index.php -%%PORTDOCS%%%%DOCSDIR%%/german/index.html -%%PORTDOCS%%%%DOCSDIR%%/german/links.html -%%PORTDOCS%%%%DOCSDIR%%/german/screenshots.html -%%PORTDOCS%%%%DOCSDIR%%/images/de.gif -%%PORTDOCS%%%%DOCSDIR%%/images/euler.gif -%%PORTDOCS%%%%DOCSDIR%%/images/fr.gif -%%PORTDOCS%%%%DOCSDIR%%/images/index.php -%%PORTDOCS%%%%DOCSDIR%%/images/pref1.gif -%%PORTDOCS%%%%DOCSDIR%%/images/pref2.gif -%%PORTDOCS%%%%DOCSDIR%%/images/pref3.gif -%%PORTDOCS%%%%DOCSDIR%%/images/pref4.gif -%%PORTDOCS%%%%DOCSDIR%%/images/ru.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot1.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot2.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot3.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot4.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot5.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot6.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot7.gif -%%PORTDOCS%%%%DOCSDIR%%/images/shot8.gif -%%PORTDOCS%%%%DOCSDIR%%/images/uk.gif -%%PORTDOCS%%%%DOCSDIR%%/index.html -%%PORTDOCS%%%%DOCSDIR%%/links.html -%%PORTDOCS%%%%DOCSDIR%%/news.html -%%PORTDOCS%%%%DOCSDIR%%/reference/about.html -%%PORTDOCS%%%%DOCSDIR%%/reference/back.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/bezier1.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/bezier2.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/bezier3.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/bezier4.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/commandline.html -%%PORTDOCS%%%%DOCSDIR%%/reference/compl0.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/compl1.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/compl2.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/compl3.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/dgl1.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/dgl2.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/euler.css -%%PORTDOCS%%%%DOCSDIR%%/reference/euler.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_credits.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_download.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_features.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_links.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_list.html -%%PORTDOCS%%%%DOCSDIR%%/reference/euler_systems.html -%%PORTDOCS%%%%DOCSDIR%%/reference/eulerdoc.html -%%PORTDOCS%%%%DOCSDIR%%/reference/examples.html -%%PORTDOCS%%%%DOCSDIR%%/reference/expressions.html -%%PORTDOCS%%%%DOCSDIR%%/reference/fft1.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/fft2.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/fft3.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/files.html -%%PORTDOCS%%%%DOCSDIR%%/reference/functions.html -%%PORTDOCS%%%%DOCSDIR%%/reference/german.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/graphics.html -%%PORTDOCS%%%%DOCSDIR%%/reference/index.html -%%PORTDOCS%%%%DOCSDIR%%/reference/intervall.html -%%PORTDOCS%%%%DOCSDIR%%/reference/introduction.html -%%PORTDOCS%%%%DOCSDIR%%/reference/knot.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/linearalgebra.html -%%PORTDOCS%%%%DOCSDIR%%/reference/links.html -%%PORTDOCS%%%%DOCSDIR%%/reference/logo.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/polynomials.html -%%PORTDOCS%%%%DOCSDIR%%/reference/programming.html -%%PORTDOCS%%%%DOCSDIR%%/reference/rene.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/settings.html -%%PORTDOCS%%%%DOCSDIR%%/reference/sin1.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/sin2.gif -%%PORTDOCS%%%%DOCSDIR%%/reference/somefiles.html -%%PORTDOCS%%%%DOCSDIR%%/reference/special.html -%%PORTDOCS%%%%DOCSDIR%%/reference/statistics.html -%%PORTDOCS%%%%DOCSDIR%%/reference/version.html -%%PORTDOCS%%%%DOCSDIR%%/screenshots.html -%%PORTDOCS%%%%DOCSDIR%%/style.css -%%DATADIR%%/help.txt -%%DATADIR%%/progs/3body.e -%%DATADIR%%/progs/3body.en -%%DATADIR%%/progs/3d.en -%%DATADIR%%/progs/3dplot.e -%%DATADIR%%/progs/apple.e -%%DATADIR%%/progs/astro.e -%%DATADIR%%/progs/astro.en -%%DATADIR%%/progs/autodemo.e -%%DATADIR%%/progs/autodemo.en -%%DATADIR%%/progs/bahnen.e -%%DATADIR%%/progs/ballistics.en -%%DATADIR%%/progs/bench.e -%%DATADIR%%/progs/bessel.e -%%DATADIR%%/progs/bezier.e -%%DATADIR%%/progs/boundaryvalue.en -%%DATADIR%%/progs/broyden.e -%%DATADIR%%/progs/cg.e -%%DATADIR%%/progs/chebysh.e -%%DATADIR%%/progs/child-and-toy.en -%%DATADIR%%/progs/child.e -%%DATADIR%%/progs/choleski.e -%%DATADIR%%/progs/complex.en -%%DATADIR%%/progs/contfrac.e -%%DATADIR%%/progs/dea.e -%%DATADIR%%/progs/dea.en -%%DATADIR%%/progs/demo.e -%%DATADIR%%/progs/demo.en -%%DATADIR%%/progs/deutsch.en -%%DATADIR%%/progs/eigen.e -%%DATADIR%%/progs/electricity.e -%%DATADIR%%/progs/electricity.en -%%DATADIR%%/progs/eval.en -%%DATADIR%%/progs/feigenbaum.en -%%DATADIR%%/progs/fftsound.en -%%DATADIR%%/progs/figure.en -%%DATADIR%%/progs/flower.e -%%DATADIR%%/progs/fmin.en -%%DATADIR%%/progs/fminmax.e -%%DATADIR%%/progs/framed.e -%%DATADIR%%/progs/games.e -%%DATADIR%%/progs/gauss.e -%%DATADIR%%/progs/histo.e -%%DATADIR%%/progs/hondt.e -%%DATADIR%%/progs/ieigen.en -%%DATADIR%%/progs/interest.e -%%DATADIR%%/progs/interval.e -%%DATADIR%%/progs/interval.en -%%DATADIR%%/progs/ipoldemo.e -%%DATADIR%%/progs/iterate.en -%%DATADIR%%/progs/kepler.e -%%DATADIR%%/progs/kette.dat -%%DATADIR%%/progs/kettenlinie.en -%%DATADIR%%/progs/linear.en -%%DATADIR%%/progs/logo.e -%%DATADIR%%/progs/logplot.en -%%DATADIR%%/progs/lorenz.e -%%DATADIR%%/progs/mandog.e -%%DATADIR%%/progs/modulo.e -%%DATADIR%%/progs/newtonbarrier.e -%%DATADIR%%/progs/opti.e -%%DATADIR%%/progs/polymult.e -%%DATADIR%%/progs/program.en -%%DATADIR%%/progs/randtest.e -%%DATADIR%%/progs/randwalk.en -%%DATADIR%%/progs/remez.e -%%DATADIR%%/progs/rendite.e -%%DATADIR%%/progs/root.en -%%DATADIR%%/progs/rounding.en -%%DATADIR%%/progs/showdgl.e -%%DATADIR%%/progs/smith.e -%%DATADIR%%/progs/sound.e -%%DATADIR%%/progs/spline.e -%%DATADIR%%/progs/splines.e -%%DATADIR%%/progs/statist.e -%%DATADIR%%/progs/statist.en -%%DATADIR%%/progs/steffens.e -%%DATADIR%%/progs/stereo.e -%%DATADIR%%/progs/svd.e -%%DATADIR%%/progs/swimming.en -%%DATADIR%%/progs/temperament.en -%%DATADIR%%/progs/test.dat -%%DATADIR%%/progs/testsuit.e -%%DATADIR%%/progs/texprint.e -%%DATADIR%%/progs/trigfit.e -%%DATADIR%%/progs/user/bad.e -%%DATADIR%%/progs/user/bode.e -%%DATADIR%%/progs/user/control.e -%%DATADIR%%/progs/user/control.txt -%%DATADIR%%/progs/user/cooling.e -%%DATADIR%%/progs/user/ctrldemo.en -%%DATADIR%%/progs/user/fftuser.en -%%DATADIR%%/progs/user/fresnel.e -%%DATADIR%%/progs/user/fresnel.en -%%DATADIR%%/progs/user/logplot.e -%%DATADIR%%/progs/user/logplot.en -%%DATADIR%%/progs/user/saite.e -%%DATADIR%%/progs/user/saite.en -%%DATADIR%%/progs/user/scope.e -%%DATADIR%%/progs/user/scope.en -%%DATADIR%%/progs/user/siggen.e -%%DATADIR%%/progs/user/smith.e -%%DATADIR%%/progs/user/theod.e -%%DATADIR%%/progs/util.e -%%DATADIR%%/progs/vplot.e -%%DATADIR%%/progs/welcome.en -%%DATADIR%%/progs/weltseil.en -%%DATADIR%%/progs/westerbench.en -%%DATADIR%%/progs/x.e -%%DATADIR%%/progs/xdis.e -%%DATADIR%%/progs/yacas.e -%%DATADIR%%/progs/yacas.en -@dirrm %%DATADIR%%/progs/user -@dirrm %%DATADIR%%/progs -@dirrm %%DATADIR%% -%%PORTDOCS%%@dirrm %%DOCSDIR%%/reference -%%PORTDOCS%%@dirrm %%DOCSDIR%%/images -%%PORTDOCS%%@dirrm %%DOCSDIR%%/german/images -%%PORTDOCS%%@dirrm %%DOCSDIR%%/german -%%PORTDOCS%%@dirrm %%DOCSDIR%%/french -%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/science/flounder/Makefile b/science/flounder/Makefile deleted file mode 100644 index 8c86c33bf7d7..000000000000 --- a/science/flounder/Makefile +++ /dev/null @@ -1,64 +0,0 @@ -# Created by: ijliao -# $FreeBSD$ - -PORTNAME= flounder -PORTVERSION= 0.40 -PORTREVISION= 18 -CATEGORIES= science -MASTER_SITES= http://www.enel.ucalgary.ca/People/vigmond/flounder/ -EXTRACT_SUFX= .tgz - -MAINTAINER= ports@FreeBSD.org -COMMENT= A quick way to visualize regularly spaced 4D data - -LIB_DEPENDS= gif:${PORTSDIR}/graphics/giflib \ - png15:${PORTSDIR}/graphics/png \ - fltk:${PORTSDIR}/x11-toolkits/fltk - -OPTIONS_DEFINE= GNUPLOT GRACE -OPTIONS_DEFAULT=GNUPLOT GRACE -GRACE_DESC= Plotting via GRACE - -DEPRECATED= Unmaintained since 2002 -EXPIRATION_DATE= 2014-04-17 -USE_GL= glut -USE_GMAKE= yes -GNU_CONFIGURE= yes - -CPPFLAGS+= -I${LOCALBASE}/include ${PTHREAD_CFLAGS} -LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS} - -PLIST_FILES= bin/flounder bin/igbhead - -NO_STAGE= yes -.include <bsd.port.options.mk> - -.if ${PORT_OPTIONS:MGNUPLOT} -BUILD_DEPENDS+= gnuplot:${PORTSDIR}/math/gnuplot -RUN_DEPENDS+= gnuplot:${PORTSDIR}/math/gnuplot -CONFIGURE_ARGS+= --enable-gnuplot -.endif - -.if ${PORT_OPTIONS:MGRACE} -BUILD_DEPENDS+= xmgrace:${PORTSDIR}/math/grace -RUN_DEPENDS+= xmgrace:${PORTSDIR}/math/grace -CONFIGURE_ARGS+= --enable-grace -.endif - -post-patch: - @${REINPLACE_CMD} -e \ - 's|-lungif|-lgif|' ${WRKSRC}/configure - @${REINPLACE_CMD} -e \ - 's|cmdline.o.*|cmdline.o| ; \ - /getopt.o/d ; \ - /getopt1.o/d ; \ - s|g++ |$$(CXX) | ; \ - s|-g | |' ${WRKSRC}/utils/Makefile - @${REINPLACE_CMD} -e \ - 's|^main(|int main(|' ${WRKSRC}/utils/igbhead.cc - -do-install: - cd ${WRKSRC}/src && ${INSTALL_PROGRAM} flounder ${PREFIX}/bin - cd ${WRKSRC}/utils && ${INSTALL_PROGRAM} igbhead ${PREFIX}/bin - -.include <bsd.port.mk> diff --git a/science/flounder/distinfo b/science/flounder/distinfo deleted file mode 100644 index 5a9f060879f3..000000000000 --- a/science/flounder/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (flounder-0.40.tgz) = 6b2ef94c3bbaa57af02f59451937a00e335c4b3680ae3c5fdf54d3019d2070df -SIZE (flounder-0.40.tgz) = 764061 diff --git a/science/flounder/files/patch-Colourscale.cc b/science/flounder/files/patch-Colourscale.cc deleted file mode 100644 index efd3d7e70d8f..000000000000 --- a/science/flounder/files/patch-Colourscale.cc +++ /dev/null @@ -1,11 +0,0 @@ ---- src/Colourscale.cc.orig Thu Jan 16 02:38:50 2003 -+++ src/Colourscale.cc Thu Jan 16 02:39:10 2003 -@@ -18,6 +18,8 @@ - */ - #include "Colourscale.h" - -+using namespace std; -+ - Colourscale :: Colourscale( int ts, CScale_t tcs ) - { - n = 0; diff --git a/science/flounder/files/patch-Fl_Gnuplot.cc b/science/flounder/files/patch-Fl_Gnuplot.cc deleted file mode 100644 index 7eed076d864d..000000000000 --- a/science/flounder/files/patch-Fl_Gnuplot.cc +++ /dev/null @@ -1,31 +0,0 @@ ---- src/Fl_Gnuplot.cc.orig 2002-12-20 03:56:35.000000000 +0900 -+++ src/Fl_Gnuplot.cc 2012-10-23 23:22:44.000000000 +0900 -@@ -39,11 +39,11 @@ - - #include <stdlib.h> - #include <stdio.h> --#include <fstream.h> - #include <unistd.h> - #include <sys/types.h> - #include <sys/stat.h> - #include <fcntl.h> -+#include <iostream> - - #include "FL/fl_draw.H" - #include "FL/fl_ask.H" -@@ -53,12 +53,14 @@ - - #define N_ENTRIES 8192 - -+using namespace std; -+ - // enter a GNUP{LOT command to be executed - void gnuplotcom_cb( Fl_Widget *w, void *p ) - { - Fl_Gnuplot* graph=(Fl_Gnuplot*)w; - -- char *s=fl_input("Enter Gnuplot commands seperated by ;",graph->command() ); -+ char *s=(char*)fl_input("Enter Gnuplot commands seperated by ;",graph->command() ); - if( s != NULL ) graph->command(s); - graph->window()->redraw(); - } diff --git a/science/flounder/files/patch-Fl_Gnuplot.h b/science/flounder/files/patch-Fl_Gnuplot.h deleted file mode 100644 index 27c98a587888..000000000000 --- a/science/flounder/files/patch-Fl_Gnuplot.h +++ /dev/null @@ -1,11 +0,0 @@ ---- src/Fl_Gnuplot.h.orig Tue Oct 15 04:00:20 2002 -+++ src/Fl_Gnuplot.h Tue Oct 15 04:00:37 2002 -@@ -47,6 +47,8 @@ - #include "FL/Fl_Widget.H" - #include "FL/Fl_Box.H" - -+using namespace std; -+ - class Fl_Gnuplot : public Fl_Box { - private: - Fl_Gnuplot(); diff --git a/science/flounder/files/patch-GlAreaUI.cc b/science/flounder/files/patch-GlAreaUI.cc deleted file mode 100644 index f872e065bae2..000000000000 --- a/science/flounder/files/patch-GlAreaUI.cc +++ /dev/null @@ -1,19 +0,0 @@ ---- src/GlAreaUI.cc.orig Thu Jan 16 02:49:11 2003 -+++ src/GlAreaUI.cc Thu Jan 16 02:50:08 2003 -@@ -19,6 +19,7 @@ - #include "../config.h" - #include "flguppy.h" - #include <algorithm> -+#include <iostream> - #ifdef HAVE_VALUES_H - #include <values.h> - #endif -@@ -34,6 +35,8 @@ - #include <avifile/utils.h> - #include <avifile/fourcc.h> - #endif -+ -+using namespace std; - - Fl_Font fontset[] = { - FL_HELVETICA, FL_HELVETICA_BOLD, diff --git a/science/flounder/files/patch-Glarea.cc b/science/flounder/files/patch-Glarea.cc deleted file mode 100644 index 115aa1248112..000000000000 --- a/science/flounder/files/patch-Glarea.cc +++ /dev/null @@ -1,11 +0,0 @@ ---- src/Glarea.cc.orig 2002-12-20 03:56:35.000000000 +0900 -+++ src/Glarea.cc 2012-12-12 23:16:47.000000000 +0900 -@@ -918,7 +918,7 @@ - igbname = fname + ".gz"; - if( (in=gzopen( igbname.c_str(), "r" )) == NULL ) { - igbname = fname + ".igb.gz"; -- if( (in=fopen( igbname.c_str(), "rb" )) == NULL ) -+ if( (in=(gzFile)fopen( igbname.c_str(), "rb" )) == NULL ) - return 1; - } - } diff --git a/science/flounder/files/patch-Glarea.h b/science/flounder/files/patch-Glarea.h deleted file mode 100644 index f74c274a0c36..000000000000 --- a/science/flounder/files/patch-Glarea.h +++ /dev/null @@ -1,20 +0,0 @@ ---- src/Glarea.h.orig 2002-12-19 19:37:48.000000000 +0100 -+++ src/Glarea.h 2011-11-17 11:21:09.000000000 +0100 -@@ -29,7 +29,7 @@ - extern "C" { - #include <gif_lib.h> - } --#include <FL/fl_file_chooser.H> -+#include <FL/Fl_File_Chooser.H> - #include <FL/fl_ask.H> - #include <FL/fl_draw.H> - #include <FL/fl_show_colormap.H> -@@ -44,6 +44,8 @@ - #include "RenderEPS.h" - #include "IGBheader.h" - -+using namespace std; -+ - typedef enum dispdim{DISP_XY, DISP_YZ, DISP_ZX, - DISP_YX, DISP_ZY, DISP_XZ} DispDim; - typedef enum bbvalue{ BBXM, BBXP, BBYM, BBYP, BBZM, BBZP } BBvalue; diff --git a/science/flounder/files/patch-IGBheader.cc b/science/flounder/files/patch-IGBheader.cc deleted file mode 100644 index 73f7207bef0a..000000000000 --- a/science/flounder/files/patch-IGBheader.cc +++ /dev/null @@ -1,52 +0,0 @@ ---- src/IGBheader.cc.orig Tue Oct 15 02:15:19 2002 -+++ src/IGBheader.cc Tue Oct 15 02:15:44 2002 -@@ -17,8 +17,11 @@ - Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA - */ - #include<stdlib.h> -+#include <iostream> - #include "IGBheader.h" - -+using namespace std; -+ - /* -------------- Bits de statut pour Header_Read et Header_Write ------ */ - - #define MOT_CLEF_INV 2 -@@ -756,7 +759,7 @@ - if (bool_comment) { - comment = v_comment; - while (*comment != NULL) { -- n_car = gzprintf(file, "#%.80s\r\n", *comment++); -+ n_car = gzprintf((gzFile)file, "#%.80s\r\n", *comment++); - if (n_car==0) { - if (!Header_Quiet) { - fprintf(stderr, "\nHeader_Write: Erreur a l'ecriture \n"); -@@ -861,7 +864,7 @@ - } - - /* --- lit le caractere suivant --- */ -- in = gzgetc( file ) ; -+ in = gzgetc( (gzFile)file ) ; - - /* --- (EOF dans l'entete) --> erreur --- */ - if ( in == -1 ) { -@@ -1318,8 +1321,8 @@ - } - } - -- if (gztell(file)!=1024) { -- gzseek( file, 1024, SEEK_SET ); -+ if (gztell((gzFile)file)!=1024) { -+ gzseek( (gzFile)file, 1024, SEEK_SET ); - if (!Header_Quiet) { - fprintf(stderr, - "\nATTENTION: etiquette de grandeur non-standard \n"); -@@ -1335,7 +1338,7 @@ - - if (bool_vect_z) { - v_vect_z = (float *)malloc(v_z*sizeof(float)); -- gzread(file, v_vect_z, sizeof(float)*v_z); -+ gzread((gzFile)file, v_vect_z, sizeof(float)*v_z); - } - - return( statut ) ; diff --git a/science/flounder/files/patch-PNGwrite.cc b/science/flounder/files/patch-PNGwrite.cc deleted file mode 100644 index 9906e80c4225..000000000000 --- a/science/flounder/files/patch-PNGwrite.cc +++ /dev/null @@ -1,11 +0,0 @@ ---- src/PNGwrite.cc.orig 2002-12-19 19:56:35.000000000 +0100 -+++ src/PNGwrite.cc 2012-05-05 09:40:41.000000000 +0200 -@@ -38,7 +38,7 @@ - png_destroy_write_struct(&png_ptr, (png_infopp)NULL); - return; - } -- setjmp(png_ptr->jmpbuf); -+ setjmp( png_jmpbuf(png_ptr)); - png_init_io(png_ptr, fp); - } - diff --git a/science/flounder/files/patch-RenderEPS.h b/science/flounder/files/patch-RenderEPS.h deleted file mode 100644 index 718932b0a1a7..000000000000 --- a/science/flounder/files/patch-RenderEPS.h +++ /dev/null @@ -1,10 +0,0 @@ ---- src/RenderEPS.h.orig 2002-12-19 13:37:24.000000000 +0900 -+++ src/RenderEPS.h 2012-10-23 23:23:41.000000000 +0900 -@@ -20,6 +20,7 @@ - #include <math.h> - #include <stdio.h> - #include <stdlib.h> -+#include <string.h> - #include <GL/gl.h> - #include <string> - using namespace std; diff --git a/science/flounder/files/patch-flguppy.h b/science/flounder/files/patch-flguppy.h deleted file mode 100644 index 969c63be1ebe..000000000000 --- a/science/flounder/files/patch-flguppy.h +++ /dev/null @@ -1,11 +0,0 @@ ---- src/flguppy.h.orig Tue Oct 15 01:03:47 2002 -+++ src/flguppy.h Tue Oct 15 01:03:57 2002 -@@ -31,6 +31,8 @@ - #include <FL/Fl_Button.H> - #include <FL/Fl_Value_Output.H> - -+using namespace std; -+ - class TableauUI { - public: - void *widg; diff --git a/science/flounder/files/patch-isosurf.cc b/science/flounder/files/patch-isosurf.cc deleted file mode 100644 index fd90b297aec1..000000000000 --- a/science/flounder/files/patch-isosurf.cc +++ /dev/null @@ -1,11 +0,0 @@ ---- src/isosurf.cc.orig Thu Jan 16 03:24:03 2003 -+++ src/isosurf.cc Thu Jan 16 03:24:16 2003 -@@ -2241,8 +2241,6 @@ - * the University of Illinois at Urbana-Champaign. - */ - --#include <malloc.h> -- - /********************************************************/ - float * - alloc_list(unsigned int size) diff --git a/science/flounder/pkg-descr b/science/flounder/pkg-descr deleted file mode 100644 index 20441134b5f3..000000000000 --- a/science/flounder/pkg-descr +++ /dev/null @@ -1,21 +0,0 @@ -Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data -set that is a function of x, y, z, and time. - -Features - - Animation - - 4D (x,y,z,t) display - - Display multiple data files linked by time - - 2D slices along prinicpal axes - - Adjustable colour scales and quantization levels - - Contour plots - - Isosurfaces - - 3D surface rendering - - 3D solid rendering - - Save images as gif, png or eps - - Save movies as animated gif or avi - - Display time series at a spatial location with zoom - - Vertical and horizontal profiles - - Tableau plots - - Adjustable colours and font - -WWW: http://www2.enel.ucalgary.ca/~vigmond/flounder/ diff --git a/science/gdis/Makefile b/science/gdis/Makefile deleted file mode 100644 index 9e4d943acddb..000000000000 --- a/science/gdis/Makefile +++ /dev/null @@ -1,92 +0,0 @@ -# $FreeBSD$ - -PORTNAME= gdis -PORTVERSION= 0.90 -CATEGORIES= science -MASTER_SITES= SF -EXTRACT_SUFX= -src.tgz - -MAINTAINER= ports@FreeBSD.org -COMMENT= Display and manipulation of isolated molecules and periodic systems - -LICENSE= GPLv2 # (or later) - -LIB_DEPENDS= gtkglext-x11-1.0:${PORTSDIR}/x11-toolkits/gtkglext - -OPTIONS_DEFINE= DOCS - -DEPRECATED= Unmaintained since 2002 -EXPIRATION_DATE= 2014-04-17 -USE_GL= glu -USE_GNOME= gtk20 -USES= gmake pkgconfig -MAKEFILE= GNUmakefile -LDFLAGS+= -lm - -PORTDOCS= CHANGELOG README TODO -PLIST_FILES= bin/gdis %%DATADIR%%/gdis.elements %%DATADIR%%/gdis.library \ - %%DATADIR%%/gdis.manual share/pixmaps/gdis.xpm -PLIST_DIRS= %%DATADIR%% - -DESKTOP_ENTRIES="GDIS" "Molecular modelling GUI" \ - "${PREFIX}/share/pixmaps/gdis.xpm" "${PORTNAME}" "" true - -NO_STAGE= yes -.include <bsd.port.options.mk> - -post-patch: - @${REINPLACE_CMD} -e \ - 's|"\(gdis.elements\)|"../share/gdis/\1| ; \ - s|"\(gdis.library\)|"../share/gdis/\1|' ${WRKSRC}/gdis.h - @${REINPLACE_CMD} -e \ - 's|"\(gdis.manual\)|"../share/gdis/\1|' ${WRKSRC}/gui_help.c - -do-configure: - @${ECHO_CMD} -n \ - > ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'USE_GUI=YES' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'USE_GRISU=NO' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'include makefile.src' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'CFLAGS:=$$(CFLAGS) -DWITH_GUI' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'INCS=`pkg-config --cflags gtkglext-1.0`' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'LIBS=`pkg-config --libs gtkglext-1.0` -lgthread-2.0' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'OBJ=$$(SRC:.c=.o)' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'all: gdis' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} 'gdis: $$(OBJ)' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} ' $$(CC) $$(OBJ) $$(LDFLAGS) -o gdis $$(LIBS)' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} '.c.o:' \ - >> ${WRKSRC}/${MAKEFILE} - @${ECHO_CMD} ' $$(CC) $$(CFLAGS) -c $$< $$(INCS)' \ - >> ${WRKSRC}/${MAKEFILE} - @(cd ${WRKSRC} && ${SED} -e 's|logo_right_81|gdis|' \ - < logo_right.xpm > gdis.xpm) - -do-install: - (cd ${WRKSRC} && ${INSTALL_PROGRAM} gdis ${PREFIX}/bin) - (cd ${WRKSRC} && ${INSTALL_DATA} gdis.xpm ${PREFIX}/share/pixmaps) - @${MKDIR} ${DATADIR} -.for i in gdis.elements gdis.library gdis.manual - (cd ${WRKSRC} && ${INSTALL_DATA} ${i} ${DATADIR}) -.endfor -.if ${PORT_OPTIONS:MDOCS} - @${MKDIR} ${DOCSDIR} -.for i in ${PORTDOCS} - (cd ${WRKSRC} && ${INSTALL_DATA} ${i} ${DOCSDIR}) -.endfor -.endif - -.include <bsd.port.mk> diff --git a/science/gdis/distinfo b/science/gdis/distinfo deleted file mode 100644 index dc355e7cf3cd..000000000000 --- a/science/gdis/distinfo +++ /dev/null @@ -1,2 +0,0 @@ -SHA256 (gdis-0.90-src.tgz) = bbf9de62dc978199d8e13e10d009b03753cee1172dcb7f9ee54c8f96b652d890 -SIZE (gdis-0.90-src.tgz) = 1895353 diff --git a/science/gdis/files/patch-grid.c b/science/gdis/files/patch-grid.c deleted file mode 100644 index 81b00d3d591d..000000000000 --- a/science/gdis/files/patch-grid.c +++ /dev/null @@ -1,20 +0,0 @@ ---- grid.c.orig -+++ grid.c -@@ -58,7 +58,7 @@ - if (grid_table) - g_hash_table_replace(grid_table, g_strdup(name), g_strdup(value)); - #else --return(NULL); -+return; - #endif - } - -@@ -80,7 +80,7 @@ - if (grid_table) - g_hash_table_remove(grid_table, name); - #else --return(NULL); -+return; - #endif - } - diff --git a/science/gdis/pkg-descr b/science/gdis/pkg-descr deleted file mode 100644 index 925a531ca6d3..000000000000 --- a/science/gdis/pkg-descr +++ /dev/null @@ -1,12 +0,0 @@ -GDIS is a GTK based program for the display and manipulation of isolated -molecules and periodic systems. It is in development, but is nonetheless -fairly functional. It has the following features: - - Support for several file types (CIF, BIOSYM, XYZ, XTL, MARVIN, and GULP) - - A simple molecular creation and manipulation tool - - A dialogue for creating starting configurations for molecular dynamics - simulations - - Assorted tools for visualization (geometry information, region - highlighting, etc.) - - Animation of BIOSYM files - -WWW: http://gdis.sourceforge.net/ |