diff options
Diffstat (limited to 'science')
28 files changed, 0 insertions, 1865 deletions
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile deleted file mode 100644 index b84a06008667..000000000000 --- a/science/hdf5-18/Makefile +++ /dev/null @@ -1,77 +0,0 @@ -# ex:ts=8 -# New ports collection makefile for: HDF5 -# Date created: Jul 7, 2002 -# Whom: ijliao -# -# $FreeBSD$ -# - -PORTNAME= hdf5 -PORTVERSION= 1.6.7 -PORTREVISION= 1 -CATEGORIES= science archivers graphics -MASTER_SITES= ftp://ftp.hdfgroup.org/HDF5/current16/src/ \ - ftp://ftp.hdfgroup.org/HDF5/prev-releases/ \ - ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/ \ - LOCAL/chinsan - -MAINTAINER= koziol@hdfgroup.org -COMMENT= Hierarchical Data Format library (from NCSA) - -USE_LDCONFIG= yes -USE_AUTOTOOLS= libtool:15 -GNU_CONFIGURE= yes -LIBTOOLFILES= configure c++/configure -CONFIGURE_ARGS= --disable-debug \ - --enable-cxx \ - --enable-instrument \ - --enable-production \ - --enable-strict-format-checks \ - --enable-threadsafe \ - --with-pthread=/usr \ - --with-ssl=/usr \ - --with-zlib=/usr -ALL_TARGET= lib progs - -.include <bsd.port.pre.mk> - -.if defined(WITH_FORTRAN) -LIBTOOLFILES+= fortran/configure -USE_FORTRAN= yes -CONFIGURE_ENV+= F9X=${FC} -CONFIGURE_ARGS+= --enable-fortran -PLIST_SUB+= FORTRAN="" -.else -PLIST_SUB+= FORTRAN="@comment " -.endif - -.if ${ARCH} == "sparc64" -BROKEN= Does not compile on ${ARCH} -.endif - -post-patch: - @${REINPLACE_CMD} -e 's|-lpthread|${PTHREAD_LIBS}|g' ${WRKSRC}/configure - @${REINPLACE_CMD} -e 's|-D_THREAD_SAFE|${PTHREAD_CFLAGS}|g' \ - -e 's|[\$$]LDFLAGS -pthread|\$$LDFLAGS ${PTHREAD_LIBS}|g' \ - ${WRKSRC}/config/freebsd ${WRKSRC}/c++/config/freebsd - @${REINPLACE_CMD} -e 's|-O3||g' ${WRKSRC}/config/gnu-flags - @${REINPLACE_CMD} -e 's|objformat=|#objformat=|g' \ - -e 's|\(version_type=freebsd\)-.*|\1-elf|g' \ - ${WRKSRC}/aclocal.m4 ${WRKSRC}/configure -.if defined(NOPORTEXAMPLES) -.for i in . c++ hl fortran - @${REINPLACE_CMD} \ - -e 's,\((cd examples && $$(MAKE) $$@) || exit 1;\),#\1,g' \ - ${WRKSRC}/${i}/Makefile.in -.endfor -.endif - -post-install: -.for i in gif2h5 h52gif h5debug h5diff h5dump h5import h5jam h5ls h5repack h5repart h5unjam - @${STRIP_CMD} ${PREFIX}/bin/${i} -.endfor - -regression-test: build - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check - -.include <bsd.port.post.mk> diff --git a/science/hdf5-18/distinfo b/science/hdf5-18/distinfo deleted file mode 100644 index 5bbf08c91ba0..000000000000 --- a/science/hdf5-18/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -MD5 (hdf5-1.6.7.tar.gz) = 79027c67188e2e4131c5573771f477ce -SHA256 (hdf5-1.6.7.tar.gz) = 9d9a98204f8c7d82f767f27f84db2520c04f5c73a4a6348c781a0d91a296e9a2 -SIZE (hdf5-1.6.7.tar.gz) = 5299219 diff --git a/science/hdf5-18/files/patch-c++::commence.in b/science/hdf5-18/files/patch-c++::commence.in deleted file mode 100644 index 393adc30cc0f..000000000000 --- a/science/hdf5-18/files/patch-c++::commence.in +++ /dev/null @@ -1,31 +0,0 @@ ---- c++/config/commence.in.orig Mon Jun 30 16:19:35 2003 -+++ c++/config/commence.in Mon Oct 20 23:44:08 2003 -@@ -27,7 +27,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - TRACE=: - -@@ -37,7 +37,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Obtain default library; the current version of libtool does not fully -@@ -60,8 +60,8 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) --EXAMPLEDIR=$(docdir)/hdf5/examples/c++ -+DOCDIR=$(docdir)/doc/hdf5 -+EXAMPLEDIR=$(docdir)/examples/hdf5/c++ - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5-18/files/patch-commence.in b/science/hdf5-18/files/patch-commence.in deleted file mode 100644 index 0795dcb37f66..000000000000 --- a/science/hdf5-18/files/patch-commence.in +++ /dev/null @@ -1,32 +0,0 @@ ---- config/commence.in.orig Tue Jul 22 23:39:43 2003 -+++ config/commence.in Mon Oct 20 23:45:00 2003 -@@ -26,7 +26,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - RUNSERIAL=@RUNSERIAL@ - RUNPARALLEL=@RUNPARALLEL@ -@@ -39,7 +39,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Shared libraries -@@ -57,9 +57,9 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) -+DOCDIR=$(docdir)/doc/hdf5 - SUBDOCDIR= --EXAMPLEDIR=$(docdir)/hdf5/examples/c -+EXAMPLEDIR=$(docdir)/examples/hdf5/c - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5-18/files/patch-fortran_H5f90i.h b/science/hdf5-18/files/patch-fortran_H5f90i.h deleted file mode 100644 index 83f5855b8993..000000000000 --- a/science/hdf5-18/files/patch-fortran_H5f90i.h +++ /dev/null @@ -1,11 +0,0 @@ ---- fortran/src/H5f90i.h.orig Thu Jul 12 21:26:46 2007 -+++ fortran/src/H5f90i.h Thu Jul 12 21:27:18 2007 -@@ -71,7 +71,7 @@ - #endif /*APPLE*/ - - /* LINUX definitions */ --#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__)) -+#if (defined(linux) || defined(__gnu_linux__) || defined(__linux__) || defined(__FreeBSD__)) - - /* Common definitions */ - typedef char *_fcd; diff --git a/science/hdf5-18/files/patch-fortran_commence.in b/science/hdf5-18/files/patch-fortran_commence.in deleted file mode 100644 index 3331f07ce406..000000000000 --- a/science/hdf5-18/files/patch-fortran_commence.in +++ /dev/null @@ -1,31 +0,0 @@ ---- fortran/config/commence.in.orig Thu Jul 12 21:28:40 2007 -+++ fortran/config/commence.in Thu Jul 12 21:33:56 2007 -@@ -47,7 +47,7 @@ - RM=rm -f - CP=cp - INSTALL=@INSTALL@ --INSTALL_PROGRAM=@INSTALL_PROGRAM@ -+INSTALL_PROGRAM=@INSTALL_SCRIPT@ - INSTALL_DATA=@INSTALL_DATA@ - PARALLEL=@PARALLEL@ - RUNSERIAL=@RUNSERIAL@ -@@ -62,7 +62,7 @@ - bindir=@bindir@ - libdir=@libdir@ - includedir=@includedir@ --docdir=@exec_prefix@/doc -+docdir=@exec_prefix@/share - PUB_LIB=$(LIB) - - ## Shared libraries -@@ -85,8 +85,8 @@ - ## Optional variables. We must declare them here because Irix pmake - ## complains if it sees a reference to a variable which has never been - ## defined. The main makefile is free to redefine these to something else. --DOCDIR=$(docdir) --EXAMPLEDIR=$(docdir)/hdf5/examples/fortran -+DOCDIR=$(docdir)/doc/hdf5 -+EXAMPLEDIR=$(docdir)/examples/hdf5/fortran - LIB= - LIB_SRC= - LIB_OBJ= diff --git a/science/hdf5-18/files/patch-fortran_configure b/science/hdf5-18/files/patch-fortran_configure deleted file mode 100644 index 7244f4e4f10a..000000000000 --- a/science/hdf5-18/files/patch-fortran_configure +++ /dev/null @@ -1,10 +0,0 @@ ---- fortran/configure.orig Thu Jul 12 21:36:24 2007 -+++ fortran/configure Thu Jul 12 21:36:49 2007 -@@ -7602,6 +7602,7 @@ - - # This can be used to rebuild libtool when needed - LIBTOOL_DEPS="$ac_aux_dir/ltmain.sh" -+$ac_aux_dir/ltconfig $LIBTOOL_DEPS - - # Always use our own libtool. - LIBTOOL='$(SHELL) $(top_builddir)/libtool' diff --git a/science/hdf5-18/files/patch-fortran_freebsd b/science/hdf5-18/files/patch-fortran_freebsd deleted file mode 100644 index 329de570663c..000000000000 --- a/science/hdf5-18/files/patch-fortran_freebsd +++ /dev/null @@ -1,23 +0,0 @@ ---- fortran/config/freebsd.orig Thu Jul 12 21:23:06 2007 -+++ fortran/config/freebsd Thu Jul 12 21:25:09 2007 -@@ -27,3 +27,20 @@ - - # Figure out compiler flags - . $srcdir/config/gnu-flags -+ -+# -+# HDF5 integers -+# -+# R_LARGE is the number of digits for the bigest integer supported. -+# R_INTEGER is the number of digits in INTEGER -+# -+# (for the Linux architechture) -+# -+R_LARGE=18 -+R_INTEGER=9 -+HADDR_T='SELECTED_INT_KIND(R_LARGE)' -+HSIZE_T='SELECTED_INT_KIND(R_LARGE)' -+HSSIZE_T='SELECTED_INT_KIND(R_LARGE)' -+HID_T='SELECTED_INT_KIND(R_INTEGER)' -+SIZE_T='SELECTED_INT_KIND(R_INTEGER)' -+OBJECT_NAMELEN_DEFAULT_F=-1 diff --git a/science/hdf5-18/pkg-descr b/science/hdf5-18/pkg-descr deleted file mode 100644 index 35a0fc9e23cf..000000000000 --- a/science/hdf5-18/pkg-descr +++ /dev/null @@ -1,17 +0,0 @@ -HDF5 is a completely new Hierarchical Data Format product consisting of a -data format specification and a supporting library implementation. HDF5 is -designed to address some of the limitations of the older HDF product and to -address current and anticipated requirements of modern systems and -applications. - -HDF5 includes the following improvements. - - A new file format designed to address some of the deficiencies of HDF4.x, - particularly the need to store larger files and more objects per file. - - A simpler, more comprehensive data model that includes only two basic - structures: a multidimensional array of record structures, and a grouping - structure. - - A simpler, better-engineered library and API, with improved support for - parallel I/O, threads, and other requirements imposed by modern systems - and applications. - -WWW: http://hdf.ncsa.uiuc.edu/HDF5/ diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist deleted file mode 100644 index ac51c104c1bd..000000000000 --- a/science/hdf5-18/pkg-plist +++ /dev/null @@ -1,169 +0,0 @@ -bin/gif2h5 -bin/h52gif -bin/h5c++ -bin/h5cc -bin/h5debug -bin/h5diff -bin/h5dump -%%FORTRAN%%bin/h5fc -bin/h5import -bin/h5jam -bin/h5ls -bin/h5redeploy -bin/h5repack -bin/h5repart -bin/h5unjam -include/H5ACpublic.h -include/H5AbstractDs.h -include/H5Apublic.h -include/H5ArrayType.h -include/H5AtomType.h -include/H5Attribute.h -include/H5Bpublic.h -include/H5Classes.h -include/H5CommonFG.h -include/H5CompType.h -include/H5Cpp.h -include/H5CppDoc.h -include/H5Cpublic.h -include/H5DataSet.h -include/H5DataSpace.h -include/H5DataType.h -include/H5DcreatProp.h -include/H5Dpublic.h -include/H5DxferProp.h -include/H5EnumType.h -include/H5Epublic.h -include/H5Exception.h -include/H5FDcore.h -include/H5FDfamily.h -include/H5FDgass.h -include/H5FDlog.h -include/H5FDmpi.h -include/H5FDmpio.h -include/H5FDmpiposix.h -include/H5FDmulti.h -include/H5FDpublic.h -include/H5FDsec2.h -include/H5FDsrb.h -include/H5FDstdio.h -include/H5FaccProp.h -include/H5FcreatProp.h -include/H5File.h -include/H5FloatType.h -include/H5Fpublic.h -include/H5Gpublic.h -include/H5Group.h -include/H5HGpublic.h -include/H5HLpublic.h -include/H5IM.h -include/H5IdComponent.h -include/H5Include.h -include/H5IntType.h -include/H5Ipublic.h -include/H5LT.h -include/H5Library.h -include/H5MMpublic.h -include/H5Object.h -include/H5Opublic.h -include/H5Ppublic.h -include/H5PredType.h -include/H5PropList.h -include/H5Rpublic.h -include/H5Spublic.h -include/H5StrType.h -include/H5TA.h -include/H5Tpublic.h -include/H5VarLenType.h -include/H5Zpublic.h -include/H5api_adpt.h -include/H5cxx_pubconf.h -include/H5pubconf.h -%%FORTRAN%%include/H5pubconf_fortran.h -include/H5public.h -include/hdf5.h -%%FORTRAN%%lib/h5a.mod -%%FORTRAN%%lib/h5d.mod -%%FORTRAN%%lib/h5e.mod -%%FORTRAN%%lib/h5f.mod -%%FORTRAN%%lib/h5fortran_flags.mod -%%FORTRAN%%lib/h5fortran_types.mod -%%FORTRAN%%lib/h5g.mod -%%FORTRAN%%lib/h5global.mod -%%FORTRAN%%lib/h5i.mod -%%FORTRAN%%lib/h5lib.mod -%%FORTRAN%%lib/h5p.mod -%%FORTRAN%%lib/h5r.mod -%%FORTRAN%%lib/h5s.mod -%%FORTRAN%%lib/h5t.mod -%%FORTRAN%%lib/h5z.mod -%%FORTRAN%%lib/hdf5.mod -lib/libhdf5.a -lib/libhdf5.la -lib/libhdf5.settings -lib/libhdf5.so -lib/libhdf5.so.0 -lib/libhdf5_cpp.a -lib/libhdf5_cpp.la -%%FORTRAN%%lib/libhdf5_fortran.a -%%FORTRAN%%lib/libhdf5_fortran.la -%%FORTRAN%%lib/libhdf5_fortran.settings -lib/libhdf5_hl.a -lib/libhdf5_hl.la -lib/libhdf5_hl.so -lib/libhdf5_hl.so.0 -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/chunks.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/compound.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/create.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/extend_ds.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/h5group.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readdata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/strtype.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/writedata.cpp -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_image2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite1.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite2.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_lite3.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_01.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_02.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_03.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_04.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_05.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_06.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_07.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_08.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_09.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_10.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_11.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ex_table_12.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_attribute.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_chunk_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_compound.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_drivers.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_extend_write.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_group.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_mount.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_read.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_reference.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_select.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/h5_write.c -%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/ph5example.c -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/attrexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/compound.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/dsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/fileexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/groupexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpit.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/grpsexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/hyperslab.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/mountexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refobjexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/refregexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/rwdsetexample.f90 -%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/fortran/selectele.f90 -%%FORTRAN%%%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/fortran -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++ -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c -%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%% diff --git a/science/kst2/Makefile b/science/kst2/Makefile deleted file mode 100644 index b93a0600c17b..000000000000 --- a/science/kst2/Makefile +++ /dev/null @@ -1,60 +0,0 @@ -# New ports collection makefile for: kst -# Date created: Fri Apr 30 17:28:56 CEST 2004 -# Whom: Markus Brueffer <markus@FreeBSD.org> -# -# $FreeBSD$ - -PORTNAME= kst -PORTVERSION= 1.7.0 -CATEGORIES= science kde -MASTER_SITES= ${MASTER_SITE_KDE} -MASTER_SITE_SUBDIR= stable/apps/KDE3.x/scientific - -MAINTAINER= makc@issp.ac.ru -COMMENT= Data viewing program for KDE - -LIB_DEPENDS= cfitsio.0:${PORTSDIR}/astro/cfitsio \ - gsl.12:${PORTSDIR}/math/gsl - -USE_KDELIBS_VER=3 -USE_GMAKE= yes -USE_AUTOTOOLS= libtool:15 -USE_LDCONFIG= yes -INSTALLS_ICONS= yes -USE_GETTEXT= yes - -OPTIONS= NETCDF "Enable netcdf file support" off \ - CDF "Enable cdf file support" off - -MAN1= kst.1 - -.include <bsd.port.pre.mk> - -.if defined(WITH_NETCDF) -LIB_DEPENDS+= netcdf.4:${PORTSDIR}/science/netcdf -PLIST_SUB+= NETCDF="" -.else -CONFIGURE_ARGS+= --without-netcdf -PLIST_SUB+= NETCDF="@comment " -.endif - -.if defined(WITH_CDF) -CONFIGURE_ARGS+=LDFLAGS="-lm" -LIB_DEPENDS+= cdf.0:${PORTSDIR}/science/cdf -PLIST_SUB+= CDF="" -.else -CONFIGURE_ARGS+= --without-cdf -PLIST_SUB+= CDF="@comment " -.endif - -pre-configure: - @${REINPLACE_CMD} -e 's|@kde_widgetdir@|@prefix@/lib/kde3/plugins/designer|' \ - ${WRKSRC}/kst/src/widgets/Makefile.in -.if !defined(WITH_NETCDF) - @${REINPLACE_CMD} -e 's| netcdf||g' ${WRKSRC}/kst/src/datasources/Makefile.in -.endif -.if !defined(WITH_CDF) - @${REINPLACE_CMD} -e 's| cdf||g' ${WRKSRC}/kst/src/datasources/Makefile.in -.endif - -.include <bsd.port.post.mk> diff --git a/science/kst2/distinfo b/science/kst2/distinfo deleted file mode 100644 index a8a96b21dc8d..000000000000 --- a/science/kst2/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -MD5 (kst-1.7.0.tar.gz) = 69db059134c9f9df0875ce89f5b178f7 -SHA256 (kst-1.7.0.tar.gz) = 8325c248675e5bbfa0367de25971ae62dad45bf76524676b95fa1d0b812ae637 -SIZE (kst-1.7.0.tar.gz) = 27908251 diff --git a/science/kst2/pkg-descr b/science/kst2/pkg-descr deleted file mode 100644 index 5b92a2f23f32..000000000000 --- a/science/kst2/pkg-descr +++ /dev/null @@ -1,18 +0,0 @@ -kst is a program for looking at data streams. It can plot: - - - x-y plots - - power spectra - - histograms - - equations (including equations of data streams). - - data in files which are being updated as data is being logged, - in which case it can act as a plotter for a chart recorder. - - much more - -You can use the mouse to rapidly zoom into interesting parts of the plots. - -In addition to a complete GUI, kst has a convenient command line interface -for rapid access to plotting data in files. kst can read data from stdin. -It provides a DCOP interface for remote manipulation, and supports several -file formats in use in scientific projects around the world. - -WWW: http://kst.kde.org/ diff --git a/science/kst2/pkg-plist b/science/kst2/pkg-plist deleted file mode 100644 index b0a50de34d5a..000000000000 --- a/science/kst2/pkg-plist +++ /dev/null @@ -1,1115 +0,0 @@ -bin/d2asc -bin/kst -bin/kstcmd -include/kst_export.h -include/kstdatasource.h -include/kstdateparser.h -include/kstextcalendarsystem.h -include/kstextcalendarsystemgregorian.h -include/kstextdatepicker.h -include/kstextdatetbl.h -include/kstextdatetime.h -include/kstextdatetimeedit.h -include/kstextdatewidget.h -include/kstobject.h -include/kstobjectcollection.h -include/kstsharedptr.h -include/kstwaitcondition.h -include/rwlock.h -lib/kde3/kstdata_ascii.a -lib/kde3/kstdata_ascii.la -lib/kde3/kstdata_ascii.so -%%CDF%%lib/kde3/kstdata_cdf.a -%%CDF%%lib/kde3/kstdata_cdf.la -%%CDF%%lib/kde3/kstdata_cdf.so -lib/kde3/kstdata_dirfile.a -lib/kde3/kstdata_dirfile.la -lib/kde3/kstdata_dirfile.so -lib/kde3/kstdata_fitsimage.a -lib/kde3/kstdata_fitsimage.la -lib/kde3/kstdata_fitsimage.so -lib/kde3/kstdata_frame.a -lib/kde3/kstdata_frame.la -lib/kde3/kstdata_frame.so -lib/kde3/kstdata_healpix.a -lib/kde3/kstdata_healpix.la -lib/kde3/kstdata_healpix.so -lib/kde3/kstdata_indirect.a -lib/kde3/kstdata_indirect.la -lib/kde3/kstdata_indirect.so -lib/kde3/kstdata_lfiio.a -lib/kde3/kstdata_lfiio.la -lib/kde3/kstdata_lfiio.so 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-%%NETCDF%%share/services/kst/kstdata_netcdf.desktop -share/services/kst/kstdata_planckIDEF.desktop -share/services/kst/kstdata_qimagesource.desktop -share/services/kst/kstdata_scuba.desktop -share/services/kst/kstdata_wmap.desktop -share/services/kst/kstextension_elog.desktop -share/services/kst/kstextension_js.desktop -share/services/kst/kstobject_akima.desktop -share/services/kst/kstobject_akima_periodic.desktop -share/services/kst/kstobject_autocorrelate.desktop -share/services/kst/kstobject_bin.desktop -share/services/kst/kstobject_binnedmap.desktop -share/services/kst/kstobject_chop.desktop -share/services/kst/kstobject_combine.desktop -share/services/kst/kstobject_convolve.desktop -share/services/kst/kstobject_crosscorrelate.desktop -share/services/kst/kstobject_crossspectrum.desktop -share/services/kst/kstobject_cspline.desktop -share/services/kst/kstobject_cspline_periodic.desktop -share/services/kst/kstobject_cumulative_sum.desktop -share/services/kst/kstobject_deconvolve.desktop -share/services/kst/kstobject_differentiation.desktop -share/services/kst/kstobject_discretizing_filters.desktop -share/services/kst/kstobject_effbandwidth.desktop -share/services/kst/kstobject_lfidifference.desktop -share/services/kst/kstobject_linear.desktop -share/services/kst/kstobject_noise_addition.desktop -share/services/kst/kstobject_periodogram.desktop -share/services/kst/kstobject_phase.desktop -share/services/kst/kstobject_polynomial.desktop -share/services/kst/kstobject_shift.desktop -share/services/kst/kstobject_statistics.desktop -share/services/kst/kstobject_syncbin.desktop -share/services/kst/kstobject_trim.desktop -share/servicetypes/kst/kstbasicplugin.desktop -share/servicetypes/kst/kstdataobjectplugin.desktop -share/servicetypes/kst/kstdatasourceplugin.desktop -share/servicetypes/kst/kstextension.desktop -share/servicetypes/kst/kstfilter.desktop -share/servicetypes/kst/kstplugin.desktop -@dirrm share/servicetypes/kst -@dirrm share/services/kst -@dirrmtry share/locale/rw/LC_MESSAGES -@dirrmtry share/locale/rw -@dirrmtry share/locale/nds/LC_MESSAGES -@dirrmtry share/locale/nds -@dirrm share/doc/HTML/sv/kst -@dirrm share/doc/HTML/nl/kst -@dirrm share/doc/HTML/it/kst -@dirrm share/doc/HTML/fr/kst -@dirrm share/doc/HTML/et/kst -@dirrm share/doc/HTML/es/kst -@dirrm share/doc/HTML/en/kst -@dirrm share/doc/HTML/de/kst -@dirrm share/doc/HTML/da/kst -@dirrmtry share/config/colors -@dirrmtry share/config -@dirrm share/apps/kst/tutorial -@dirrm share/apps/kst/pics -@dirrm share/apps/kst/fonts -@dirrm share/apps/kst -@dirrmtry share/apps/kconf_update -@dirrmtry share/applications/kde -@dirrmtry lib/kde3/plugins/designer -@dirrmtry lib/kde3/plugins -@dirrm lib/kde3/kstplugins diff --git a/science/netcdf4/Makefile b/science/netcdf4/Makefile deleted file mode 100644 index 7ef4c97f6305..000000000000 --- a/science/netcdf4/Makefile +++ /dev/null @@ -1,57 +0,0 @@ -# New ports collection makefile for: netcdf -# Date created: 29 July 1999 -# Whom: Thomas Gellekum <tg@FreeBSD.org> -# -# $FreeBSD$ -# - -PORTNAME= netcdf -PORTVERSION= 3.6.3 -PORTREVISION= 1 -CATEGORIES= science -MASTER_SITES= ftp://ftp.unidata.ucar.edu/pub/netcdf/ \ - http://sunpoet.net/distfiles/ - -MAINTAINER= sunpoet@sunpoet.net -COMMENT= Library for machine-independent, array-oriented data access - -CONFLICTS= hdf-4.* netcdf-4.* - -CONFIGURE_ARGS= --enable-shared -CONFIGURE_ENV= CPPFLAGS="${CPPFLAGS} -I${LOCALBASE}/include -fPIC -DPIC -Df2cFortran" - -GNU_CONFIGURE= yes -USE_LDCONFIG= yes -CONFIGURE_ENV+= ${MAKE_ENV} -PORTDOCS= COPYRIGHT README RELEASE_NOTES - -MAN1= ncdump.1 ncgen.1 -MAN3= netcdf.3 - -INFO= netcdf netcdf-c netcdf-cxx netcdf-f77 netcdf-f90 \ - netcdf-install netcdf-tutorial - -.ifdef WITH_FORTRAN -USE_FORTRAN= yes -MAN3+= netcdf_f77.3 netcdf_f90.3 -PLIST_SUB+= FORTRAN="" -.else -CONFIGURE_ARGS+=--disable-f77 -PLIST_SUB+= FORTRAN="@comment " -.endif - -post-install: - @${STRIP_CMD} ${PREFIX}/bin/ncdump ${PREFIX}/bin/ncgen - ${LN} -fs libnetcdf.so.4 ${PREFIX}/lib/libnetcdf.so - ${LN} -fs libnetcdf_c++.so.4 ${PREFIX}/lib/libnetcdf_c++.so -.if !defined(NOPORTDOCS) - @${INSTALL} -d ${DOCSDIR} - @cd ${WRKSRC} && ${INSTALL_DATA} ${PORTDOCS} ${DOCSDIR} -.else -CONFIGURE_ARGS+= --disable-docs-install -.endif - -regression-test: build - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} ${MAKE} check - -.include <bsd.port.mk> diff --git a/science/netcdf4/distinfo b/science/netcdf4/distinfo deleted file mode 100644 index effcfec85197..000000000000 --- a/science/netcdf4/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -MD5 (netcdf-3.6.3.tar.gz) = 334e9bdc010b6cd03fd6531a45fe50ad -SHA256 (netcdf-3.6.3.tar.gz) = afa1a0fa82b9ea33b035257b6e9662b22e135f98b2fd93d5cf030320dfc3ffa1 -SIZE (netcdf-3.6.3.tar.gz) = 11572512 diff --git a/science/netcdf4/files/patch-fortran+cfortran.h b/science/netcdf4/files/patch-fortran+cfortran.h deleted file mode 100644 index e3baf9ec0e9b..000000000000 --- a/science/netcdf4/files/patch-fortran+cfortran.h +++ /dev/null @@ -1,21 +0,0 @@ ---- fortran/cfortran.h.orig 2008-07-23 21:47:30.000000000 -0500 -+++ fortran/cfortran.h 2008-07-23 21:48:50.000000000 -0500 -@@ -134,7 +134,8 @@ - /* Split #if into 2 because some HP-UX can't handle long #if */ - #if !(defined(NAGf90Fortran)||defined(f2cFortran)||defined(hpuxFortran)||defined(apolloFortran)||defined(sunFortran)||defined(IBMR2Fortran)||defined(CRAYFortran)||defined(PATHSCALE_COMPILER)||defined(gFortran)) - #if !(defined(mipsFortran)||defined(DECFortran)||defined(vmsFortran)||defined(CONVEXFortran)||defined(PowerStationFortran)||defined(AbsoftUNIXFortran)||defined(AbsoftProFortran)||defined(SXFortran)) --/* If your compiler barfs on ' #error', replace # with the trigraph for # */ -+#define f2cFortran -+/* If your compiler barfs on ' #error', replace # with the trigraph for # - #error "cfortran.h: Can't find your environment among:\ - - MIPS cc and f77 2.0. (e.g. Silicon Graphics, DECstations, ...) \ - - IBM AIX XL C and FORTRAN Compiler/6000 Version 01.01.0000.0000 \ -@@ -158,7 +159,7 @@ - - Absoft Pro Fortran: Use #define AbsoftProFortran \ - - Portland Group Fortran: Use #define pgiFortran \ - - PathScale Fortran: Use #define PATHSCALE_COMPILER" --/* Compiler must throw us out at this point! */ -+ Compiler must throw us out at this point! */ - #endif - #endif - diff --git a/science/netcdf4/pkg-descr b/science/netcdf4/pkg-descr deleted file mode 100644 index a8ab96607da6..000000000000 --- a/science/netcdf4/pkg-descr +++ /dev/null @@ -1,9 +0,0 @@ -NetCDF (network Common Data Form) is an interface for array-oriented -data access and a library that provides an implementation of the -interface. The netCDF library also defines a machine-independent -format for representing scientific data. Together, the interface, -library, and format support the creation, access, and sharing of -scientific data. The netCDF software was developed at the Unidata -Program Center in Boulder, Colorado. - -WWW: http://www.unidata.ucar.edu/packages/netcdf/ diff --git a/science/netcdf4/pkg-plist b/science/netcdf4/pkg-plist deleted file mode 100644 index 2f3e19916950..000000000000 --- a/science/netcdf4/pkg-plist +++ /dev/null @@ -1,21 +0,0 @@ -bin/ncdump -bin/ncgen -include/ncvalues.h -include/netcdf.h -include/netcdf.hh -%%FORTRAN%%include/netcdf.mod -%%FORTRAN%%include/typesizes.mod -include/netcdfcpp.h -lib/libnetcdf.a -lib/libnetcdf.la -lib/libnetcdf.so -lib/libnetcdf.so.4 -lib/libnetcdf_c++.a -lib/libnetcdf_c++.la -lib/libnetcdf_c++.so -lib/libnetcdf_c++.so.4 -%%FORTRAN%%lib/libnetcdff.a -%%FORTRAN%%lib/libnetcdff.la -%%FORTRAN%%lib/libnetcdff.so -%%FORTRAN%%lib/libnetcdff.so.4 -@dirrmtry %%DOCSDIR%% diff --git a/science/pyvox/Makefile b/science/pyvox/Makefile deleted file mode 100644 index c3aee72b9a3b..000000000000 --- a/science/pyvox/Makefile +++ /dev/null @@ -1,37 +0,0 @@ -# ex:ts=8 -# Ports collection Makefile for: bblimage -# Date created: Jul 22, 2002 -# Whom: ijliao -# -# $FreeBSD$ -# - -PORTNAME= bblimage -PORTVERSION= 0.66 -PORTREVISION= 3 -CATEGORIES= science -MASTER_SITES= ${MASTER_SITE_LOCAL} -MASTER_SITE_SUBDIR= miwi -EXTRACT_SUFX= .src.tgz - -MAINTAINER= ports@FreeBSD.org -COMMENT= A set of software tools for medical image processing - -LIB_DEPENDS= Xm.2:${PORTSDIR}/x11-toolkits/lesstif - -USE_XORG= x11 -USE_PYTHON= yes -GNU_CONFIGURE= yes -CONFIGURE_ARGS= --with-lapack --with-python -USE_GMAKE= yes -USE_LDCONFIG= yes - -MAN1= anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \ - imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \ - vibihist.1 vihist.1 -MAN5= cdata.5 mri_data.5 param.5 - -post-patch: - @${REINPLACE_CMD} -e "s|python1\.5|${PYTHON_VERSION}|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in - -.include <bsd.port.mk> diff --git a/science/pyvox/distinfo b/science/pyvox/distinfo deleted file mode 100644 index 7da85ab0f456..000000000000 --- a/science/pyvox/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c -SHA256 (bblimage-0.66.src.tgz) = d645cda214076dc9977b7ed099f3643b19fe5552eab4a2ea9ddae6cec5d37f11 -SIZE (bblimage-0.66.src.tgz) = 967079 diff --git a/science/pyvox/pkg-descr b/science/pyvox/pkg-descr deleted file mode 100644 index 9753cc4f0d55..000000000000 --- a/science/pyvox/pkg-descr +++ /dev/null @@ -1,10 +0,0 @@ -BBLimage is a set of software tools for medical image processing, particularly -skull stripping and segmentation of MR brain images; tools to support other -applications may be added later. These tools are intended to support -researchers who need to prototype new image analysis algorithms or to develop -automated image analysis tools for specific image analysis applications. The -sequence of processing operations is specified through a scripting language -which can be used interactively or in command files; the language used is an -extension of Python. - -WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/ diff --git a/science/pyvox/pkg-plist b/science/pyvox/pkg-plist deleted file mode 100644 index 114ca046c741..000000000000 --- a/science/pyvox/pkg-plist +++ /dev/null @@ -1,25 +0,0 @@ -bin/anonbblanz -bin/binnseg -bin/conseg -bin/decomment -bin/dumpbblanz -bin/imstack -bin/inleav2 -bin/lovar -bin/qdv -bin/rowcol -bin/rpsamp -bin/skmiv -bin/swab -bin/usb2uc -bin/vibihist -bin/vihist -lib/libbbli.so -%%PYTHON_SITELIBDIR%%/exim.so -%%PYTHON_SITELIBDIR%%/optim.py -%%PYTHON_SITELIBDIR%%/optim.pyc -%%PYTHON_SITELIBDIR%%/pyvox.py -%%PYTHON_SITELIBDIR%%/pyvox.pyc -%%PYTHON_SITELIBDIR%%/pyvoxC.so -%%PYTHON_SITELIBDIR%%/regis.py -%%PYTHON_SITELIBDIR%%/regis.pyc diff --git a/science/ruby-netcdf/Makefile b/science/ruby-netcdf/Makefile deleted file mode 100644 index d63a0c8aea86..000000000000 --- a/science/ruby-netcdf/Makefile +++ /dev/null @@ -1,38 +0,0 @@ -# New ports collection makefile for: RubyNetCDF -# Date created: 11 June 2002 -# Whom: Akinori MUSHA aka knu <knu@idaemons.org> -# -# $FreeBSD$ -# - -PORTNAME= netcdf -PORTVERSION= 0.6.3 -CATEGORIES= math ruby -MASTER_SITES= http://ruby.gfd-dennou.org/products/ruby-netcdf/ -PKGNAMEPREFIX= ${RUBY_PKGNAMEPREFIX} -DISTNAME= ruby-${PORTNAME}-${PORTVERSION} -DIST_SUBDIR= ruby - -MAINTAINER= ports@FreeBSD.org -COMMENT= A Ruby interface to the NetCDF scientific IO library - -BUILD_DEPENDS= ${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray -LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf -RUN_DEPENDS= ${RUBY_SITEARCHLIBDIR}/narray.so:${PORTSDIR}/math/ruby-narray - -USE_RUBY= yes -USE_RUBY_EXTCONF= yes - -DOCS= ChangeLog ToDo doc/* - -post-install: -.if !defined(NOPORTDOCS) - ${MKDIR} ${RUBY_MODEXAMPLESDIR} - ${INSTALL_DATA} ${WRKSRC}/demo/* ${RUBY_MODEXAMPLESDIR}/ - ${MKDIR} ${RUBY_MODDOCDIR} -.for f in ${DOCS} - ${INSTALL_DATA} ${WRKSRC}/${f} ${RUBY_MODDOCDIR}/ -.endfor -.endif - -.include <bsd.port.mk> diff --git a/science/ruby-netcdf/distinfo b/science/ruby-netcdf/distinfo deleted file mode 100644 index 605078cd9ae2..000000000000 --- a/science/ruby-netcdf/distinfo +++ /dev/null @@ -1,3 +0,0 @@ -MD5 (ruby/ruby-netcdf-0.6.3.tar.gz) = 5ee057cb0c257fdbf8b6cbf4715ac9ae -SHA256 (ruby/ruby-netcdf-0.6.3.tar.gz) = 88bce5d3dd55fdde771e7003a784503e0becad302ae8af26512fe963e7fed8d0 -SIZE (ruby/ruby-netcdf-0.6.3.tar.gz) = 73886 diff --git a/science/ruby-netcdf/files/patch-extconf.rb b/science/ruby-netcdf/files/patch-extconf.rb deleted file mode 100644 index d0708cf8702a..000000000000 --- a/science/ruby-netcdf/files/patch-extconf.rb +++ /dev/null @@ -1,12 +0,0 @@ ---- extconf.rb.orig Thu Jun 23 09:20:15 2005 -+++ extconf.rb Tue Jan 17 13:36:39 2006 -@@ -105,9 +105,6 @@ - newmkfl.puts("") - newmkfl.puts("test: all") # insert the "test" target - newmkfl.puts("\t\t@cd test && ruby test.rb && echo 'test did not fail :-p (please ignore the warnings)' && cd ..") -- when /lib\/netcdf/ -- line = line.chomp! + "/" -- newmkfl.puts(line) - else - newmkfl.puts(line) - end diff --git a/science/ruby-netcdf/pkg-descr b/science/ruby-netcdf/pkg-descr deleted file mode 100644 index f89d48a0bdc3..000000000000 --- a/science/ruby-netcdf/pkg-descr +++ /dev/null @@ -1,5 +0,0 @@ -This is a Ruby interface to the NetCDF scientific IO library. - -Author: Takeshi Horinouchi <horinout@kurasc.kyoto-u.ac.jp> - & Dennou Ruby Project -WWW: http://ruby.gfd-dennou.org/products/ruby-netcdf diff --git a/science/ruby-netcdf/pkg-plist b/science/ruby-netcdf/pkg-plist deleted file mode 100644 index 139c9f991a09..000000000000 --- a/science/ruby-netcdf/pkg-plist +++ /dev/null @@ -1,21 +0,0 @@ -%%RUBY_SITEARCHLIBDIR%%/numru/netcdfraw.so -@unexec rmdir %B 2>/dev/null || true -%%RUBY_SITELIBDIR%%/numru/netcdf.rb -%%RUBY_SITELIBDIR%%/numru/netcdf_miss.rb -@unexec rmdir %B 2>/dev/null || true -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/README -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/demo1-create-alt.rb -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/demo1-create.rb -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/demo2-graphic.rb -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/demo3-ncepclim.rb -%%PORTDOCS%%%%RUBY_MODEXAMPLESDIR%%/demo4-copy.rb -%%PORTDOCS%%@dirrm %%RUBY_MODEXAMPLESDIR%% -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ChangeLog -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/ToDo -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/README_JP.txt -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Ref_man.html -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Ref_man.rd -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Ref_man_jp.html -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/Ref_man_jp.rd -%%PORTDOCS%%%%RUBY_MODDOCDIR%%/to_html -%%PORTDOCS%%@dirrm %%RUBY_MODDOCDIR%% |