diff options
Diffstat (limited to '')
37 files changed, 315 insertions, 64 deletions
diff --git a/math/R-cran-robustbase/Makefile b/math/R-cran-robustbase/Makefile index 2fce5153b0f8..6dfaafd0e06a 100644 --- a/math/R-cran-robustbase/Makefile +++ b/math/R-cran-robustbase/Makefile @@ -1,5 +1,5 @@ PORTNAME= robustbase -DISTVERSION= 0.99-4-1 +DISTVERSION= 0.99-6 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-robustbase/distinfo b/math/R-cran-robustbase/distinfo index d4eec7785f87..817bf39c2761 100644 --- a/math/R-cran-robustbase/distinfo +++ b/math/R-cran-robustbase/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1727586670 -SHA256 (robustbase_0.99-4-1.tar.gz) = 481edee7614f66a39d31d930e58ff02b1c4282e0daad51a106c6b7aa8011ff91 -SIZE (robustbase_0.99-4-1.tar.gz) = 2289218 +TIMESTAMP = 1757203590 +SHA256 (robustbase_0.99-6.tar.gz) = fa08c42c2cba521210725fd57bd1d456ced68e3da7569cffe38be24a4cf31a1d +SIZE (robustbase_0.99-6.tar.gz) = 2322108 diff --git a/math/R-cran-spdep/Makefile b/math/R-cran-spdep/Makefile index 37edf97fc657..c078d1c9e9d1 100644 --- a/math/R-cran-spdep/Makefile +++ b/math/R-cran-spdep/Makefile @@ -1,5 +1,5 @@ PORTNAME= spdep -DISTVERSION= 1.3-13 +DISTVERSION= 1.4-1 CATEGORIES= math DISTNAME= ${PORTNAME}_${DISTVERSION} diff --git a/math/R-cran-spdep/distinfo b/math/R-cran-spdep/distinfo index 7bca8b88f681..2b493d53faea 100644 --- a/math/R-cran-spdep/distinfo +++ b/math/R-cran-spdep/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1749634372 -SHA256 (spdep_1.3-13.tar.gz) = 7ac5905c126899f88fdf5c1f2bbedc7609e0c3ca210d40abaa5da2d2a9a2685a -SIZE (spdep_1.3-13.tar.gz) = 4695720 +TIMESTAMP = 1756892699 +SHA256 (spdep_1.4-1.tar.gz) = 4d0beca3b8b696373a74670f916cca3e77cbe97d002f3be62f172815774f5588 +SIZE (spdep_1.4-1.tar.gz) = 4694107 diff --git a/math/algae/Makefile b/math/algae/Makefile index 385a737f6ad6..3042e6816d32 100644 --- a/math/algae/Makefile +++ b/math/algae/Makefile @@ -15,13 +15,12 @@ BROKEN_aarch64= does not build: checking for proper floating point exception ha BROKEN_armv6= does not build: checking for proper floating point exception handling... no BROKEN_armv7= does not build: checking for proper floating point exception handling... no -GNU_CONFIGURE= yes -GNU_CONFIGURE_MANPREFIX=${PREFIX}/share -USES= fortran +USES= fortran:gfortran +GNU_CONFIGURE= yes CONFIGURE_ARGS= --disable-dlmalloc --without-fftw --without-blas \ --without-lapack --without-bcslib --without-npsol -FFLAGS+= -std=legacy +FFLAGS= -std=legacy PLIST_SUB= ALGAE_VERSION=${PORTVERSION} INFO= ${PORTNAME} diff --git a/math/armadillo/Makefile b/math/armadillo/Makefile index 02ee57d23f66..01ec0bb7807e 100644 --- a/math/armadillo/Makefile +++ b/math/armadillo/Makefile @@ -1,6 +1,5 @@ PORTNAME= armadillo -PORTVERSION= 14.6.1 -PORTREVISION= 1 +PORTVERSION= 15.0.1 CATEGORIES= math MASTER_SITES= SF/arma diff --git a/math/armadillo/distinfo b/math/armadillo/distinfo index 7235cfc3f1f3..4f584d83534e 100644 --- a/math/armadillo/distinfo +++ b/math/armadillo/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1753265704 -SHA256 (armadillo-14.6.1.tar.xz) = bec67f368fc61673c4c9e9429d20135a42ba80a2c7f8592b912e5f97e289bfc0 -SIZE (armadillo-14.6.1.tar.xz) = 7159088 +TIMESTAMP = 1757120516 +SHA256 (armadillo-15.0.1.tar.xz) = f520a0d50bbafccd7b9e793321cd7ffed374695c2e38bbdfd428841745e04c37 +SIZE (armadillo-15.0.1.tar.xz) = 7174236 diff --git a/math/armadillo/pkg-plist b/math/armadillo/pkg-plist index e2d15e4f8844..650dbd4843a2 100644 --- a/math/armadillo/pkg-plist +++ b/math/armadillo/pkg-plist @@ -78,8 +78,7 @@ include/armadillo_bits/band_helper.hpp include/armadillo_bits/compiler_check.hpp include/armadillo_bits/compiler_setup.hpp include/armadillo_bits/compiler_setup_post.hpp -include/armadillo_bits/cond_rel_bones.hpp -include/armadillo_bits/cond_rel_meat.hpp +include/armadillo_bits/cond_rel.hpp include/armadillo_bits/config.hpp include/armadillo_bits/constants.hpp include/armadillo_bits/constants_old.hpp @@ -123,6 +122,7 @@ include/armadillo_bits/fn_as_scalar.hpp include/armadillo_bits/fn_balance.hpp include/armadillo_bits/fn_chi2rnd.hpp include/armadillo_bits/fn_chol.hpp +include/armadillo_bits/fn_circshift.hpp include/armadillo_bits/fn_clamp.hpp include/armadillo_bits/fn_cond_rcond.hpp include/armadillo_bits/fn_conv.hpp @@ -144,7 +144,6 @@ include/armadillo_bits/fn_eig_sym.hpp include/armadillo_bits/fn_eigs_gen.hpp include/armadillo_bits/fn_eigs_sym.hpp include/armadillo_bits/fn_elem.hpp -include/armadillo_bits/fn_eps.hpp include/armadillo_bits/fn_expmat.hpp include/armadillo_bits/fn_eye.hpp include/armadillo_bits/fn_fft.hpp @@ -212,7 +211,6 @@ include/armadillo_bits/fn_resize.hpp include/armadillo_bits/fn_reverse.hpp include/armadillo_bits/fn_roots.hpp include/armadillo_bits/fn_schur.hpp -include/armadillo_bits/fn_shift.hpp include/armadillo_bits/fn_shuffle.hpp include/armadillo_bits/fn_size.hpp include/armadillo_bits/fn_solve.hpp @@ -354,6 +352,8 @@ include/armadillo_bits/newarp_UpperHessenbergEigen_meat.hpp include/armadillo_bits/newarp_UpperHessenbergQR_bones.hpp include/armadillo_bits/newarp_UpperHessenbergQR_meat.hpp include/armadillo_bits/newarp_cx_attrib.hpp +include/armadillo_bits/op_accu_bones.hpp +include/armadillo_bits/op_accu_meat.hpp include/armadillo_bits/op_all_bones.hpp include/armadillo_bits/op_all_meat.hpp include/armadillo_bits/op_any_bones.hpp @@ -362,6 +362,8 @@ include/armadillo_bits/op_chi2rnd_bones.hpp include/armadillo_bits/op_chi2rnd_meat.hpp include/armadillo_bits/op_chol_bones.hpp include/armadillo_bits/op_chol_meat.hpp +include/armadillo_bits/op_circshift_bones.hpp +include/armadillo_bits/op_circshift_meat.hpp include/armadillo_bits/op_clamp_bones.hpp include/armadillo_bits/op_clamp_meat.hpp include/armadillo_bits/op_col_as_mat_bones.hpp @@ -390,6 +392,8 @@ include/armadillo_bits/op_dot_bones.hpp include/armadillo_bits/op_dot_meat.hpp include/armadillo_bits/op_dotext_bones.hpp include/armadillo_bits/op_dotext_meat.hpp +include/armadillo_bits/op_elem_bones.hpp +include/armadillo_bits/op_elem_meat.hpp include/armadillo_bits/op_expmat_bones.hpp include/armadillo_bits/op_expmat_meat.hpp include/armadillo_bits/op_fft_bones.hpp @@ -424,8 +428,6 @@ include/armadillo_bits/op_median_bones.hpp include/armadillo_bits/op_median_meat.hpp include/armadillo_bits/op_min_bones.hpp include/armadillo_bits/op_min_meat.hpp -include/armadillo_bits/op_misc_bones.hpp -include/armadillo_bits/op_misc_meat.hpp include/armadillo_bits/op_nonzeros_bones.hpp include/armadillo_bits/op_nonzeros_meat.hpp include/armadillo_bits/op_norm2est_bones.hpp @@ -468,8 +470,6 @@ include/armadillo_bits/op_roots_bones.hpp include/armadillo_bits/op_roots_meat.hpp include/armadillo_bits/op_row_as_mat_bones.hpp include/armadillo_bits/op_row_as_mat_meat.hpp -include/armadillo_bits/op_shift_bones.hpp -include/armadillo_bits/op_shift_meat.hpp include/armadillo_bits/op_shuffle_bones.hpp include/armadillo_bits/op_shuffle_meat.hpp include/armadillo_bits/op_sort_bones.hpp @@ -570,6 +570,10 @@ include/armadillo_bits/spglue_schur_bones.hpp include/armadillo_bits/spglue_schur_meat.hpp include/armadillo_bits/spglue_times_bones.hpp include/armadillo_bits/spglue_times_meat.hpp +include/armadillo_bits/spop_accu_bones.hpp +include/armadillo_bits/spop_accu_meat.hpp +include/armadillo_bits/spop_circshift_bones.hpp +include/armadillo_bits/spop_circshift_meat.hpp include/armadillo_bits/spop_diagmat_bones.hpp include/armadillo_bits/spop_diagmat_meat.hpp include/armadillo_bits/spop_htrans_bones.hpp @@ -588,8 +592,6 @@ include/armadillo_bits/spop_repmat_bones.hpp include/armadillo_bits/spop_repmat_meat.hpp include/armadillo_bits/spop_reverse_bones.hpp include/armadillo_bits/spop_reverse_meat.hpp -include/armadillo_bits/spop_shift_bones.hpp -include/armadillo_bits/spop_shift_meat.hpp include/armadillo_bits/spop_strans_bones.hpp include/armadillo_bits/spop_strans_meat.hpp include/armadillo_bits/spop_symmat_bones.hpp @@ -641,7 +643,7 @@ include/armadillo_bits/xtrans_mat_meat.hpp include/armadillo_bits/xvec_htrans_bones.hpp include/armadillo_bits/xvec_htrans_meat.hpp lib/libarmadillo.so -lib/libarmadillo.so.14 +lib/libarmadillo.so.15 lib/libarmadillo.so.%%PORTVERSION%% libdata/pkgconfig/armadillo.pc share/Armadillo/CMake/ArmadilloConfig.cmake diff --git a/math/blacs/Makefile b/math/blacs/Makefile index 8e696c89704d..f550f55ff9a4 100644 --- a/math/blacs/Makefile +++ b/math/blacs/Makefile @@ -1,6 +1,6 @@ PORTNAME= blacs PORTVERSION= 1.7 -PORTREVISION= 40 +PORTREVISION= 41 CATEGORIES= math MASTER_SITES= NETLIB/blacs DISTNAME= BLACS @@ -36,7 +36,7 @@ MPICH_EXTRA_PATCHES= ${FILESDIR}/Bmake.inc-mpich.diff .include <bsd.port.pre.mk> F77EXTRAFLAGS= #-w -fno-globals -fugly-complex -.if ${GCC_DEFAULT} >= 10 +.if ${FORTRAN_DEFAULT} == gfortran && ${GCC_DEFAULT} >= 10 # workaround for Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1) F77EXTRAFLAGS+= -fallow-argument-mismatch .endif diff --git a/math/blacs/files/Bmake.inc-mpich.diff b/math/blacs/files/Bmake.inc-mpich.diff index 5224616e5cc8..3e30b122de6f 100644 --- a/math/blacs/files/Bmake.inc-mpich.diff +++ b/math/blacs/files/Bmake.inc-mpich.diff @@ -35,7 +35,7 @@ MPILIBdir = $(MPIdir)/lib/ MPIINCdir = $(MPIdir)/include - MPILIB = $(MPILIBdir)/libmpich.a -+ MPILIB = -lmpi -lmpifort -pthread ++ MPILIB = -lmpi -lmpifort -pthread -L$(MPILIBdir) # ------------------------------------- # All libraries required by the tester. diff --git a/math/blacs/files/patch-SRC_MPI_Bdef.h b/math/blacs/files/patch-SRC_MPI_Bdef.h index 75a6acbe5696..adcdd43918c2 100644 --- a/math/blacs/files/patch-SRC_MPI_Bdef.h +++ b/math/blacs/files/patch-SRC_MPI_Bdef.h @@ -1,6 +1,22 @@ ---- SRC/MPI/Bdef.h.orig 2020-04-21 20:22:36 UTC +--- SRC/MPI/Bdef.h.orig 1998-03-13 20:14:33 UTC +++ SRC/MPI/Bdef.h -@@ -1605,9 +1605,9 @@ int BI_ContxtNum(); +@@ -322,6 +322,15 @@ int BI_ContxtNum(BLACSCONTEXT *ctxt); + void BI_BlacsWarn(int ConTxt, int line, char *file, char *form, ...); + void BI_BlacsErr(int ConTxt, int line, char *file, char *form, ...); + int BI_ContxtNum(BLACSCONTEXT *ctxt); ++void BI_TransDist(BLACSCONTEXT *ctxt, char scope, int m, int n, int *rA, ++ int *cA, int ldrc, BI_DistType *dist, int rdest, int cdest); ++void BI_dmvcopy(int m, int n, double *A, int lda, double *buff); ++void BI_dvmcopy(int m, int n, double *A, int lda, double *buff); ++void BI_imvcopy(int m, int n, int *A, int lda, int *buff); ++void BI_ivmcopy(int m, int n, int *A, int lda, int *buff); ++void BI_smvcopy(int m, int n, float *A, int lda, float *buff); ++void BI_svmcopy(int m, int n, float *A, int lda, float *buff); ++void Cblacs_pinfo(int *mypnum, int *nprocs); + #else + void BI_BlacsWarn(); + void BI_BlacsErr(); +@@ -1605,9 +1614,9 @@ int BI_ContxtNum(); #else #define BI_MPI_Type_struct(count_, lens_, disps_, types_, newtype_, ierr_) \ { \ diff --git a/math/blacs/files/patch-SRC_MPI_blacs__get__.c b/math/blacs/files/patch-SRC_MPI_blacs__get__.c new file mode 100644 index 000000000000..02f1b33c989e --- /dev/null +++ b/math/blacs/files/patch-SRC_MPI_blacs__get__.c @@ -0,0 +1,11 @@ +--- SRC/MPI/blacs_get_.c.orig 2006-01-18 21:36:03 UTC ++++ SRC/MPI/blacs_get_.c +@@ -12,6 +12,8 @@ F_VOID_FUNC blacs_get_(int *ConTxt, int *what, int *va + #else + int comm; + #endif ++ void BI_MPI_C_to_f77_trans_comm(MPI_Comm, int *); ++ void BI_MPI_F77_to_c_trans_comm(int F77comm, MPI_Comm *Ccomm); + BLACSCONTEXT *ctxt; + + switch( Mpval(what) ) diff --git a/math/blacs/files/patch-SRC_MPI_blacs__gridinit__.c b/math/blacs/files/patch-SRC_MPI_blacs__gridinit__.c new file mode 100644 index 000000000000..6c102072a27b --- /dev/null +++ b/math/blacs/files/patch-SRC_MPI_blacs__gridinit__.c @@ -0,0 +1,15 @@ +--- SRC/MPI/blacs_gridinit_.c.orig 2006-01-18 21:36:03 UTC ++++ SRC/MPI/blacs_gridinit_.c +@@ -6,7 +6,12 @@ F_VOID_FUNC blacs_gridinit_(int *ConTxt, F_CHAR order, + F_VOID_FUNC blacs_gridinit_(int *ConTxt, F_CHAR order, int *nprow, int *npcol) + #endif + { ++#if (INTFACE == C_CALL) + void Cblacs_gridmap(int *, int *, int, int, int); ++#else ++ F_VOID_FUNC blacs_gridmap_(int *ConTxt, int *usermap, int *ldup, int *nprow0, ++ int *npcol0); ++#endif + int *tmpgrid, *iptr; + int i, j; + diff --git a/math/blacs/files/patch-SRC_MPI_blacs__pinfo__.c b/math/blacs/files/patch-SRC_MPI_blacs__pinfo__.c new file mode 100644 index 000000000000..5d6f5111549a --- /dev/null +++ b/math/blacs/files/patch-SRC_MPI_blacs__pinfo__.c @@ -0,0 +1,11 @@ +--- SRC/MPI/blacs_pinfo_.c.orig 1998-03-13 20:16:27 UTC ++++ SRC/MPI/blacs_pinfo_.c +@@ -1,5 +1,8 @@ + #include "Bdef.h" + ++void bi_f77_init_(void); ++void bi_f77_get_constants_(int*, int*, int*); ++ + #if (INTFACE == C_CALL) + void Cblacs_pinfo(int *mypnum, int *nprocs) + #else diff --git a/math/bliss/Makefile b/math/bliss/Makefile index d975c7618a9d..4800948e6bf6 100644 --- a/math/bliss/Makefile +++ b/math/bliss/Makefile @@ -1,5 +1,6 @@ PORTNAME= bliss DISTVERSION= 0.73 +PORTREVISION= 1 CATEGORIES= math MASTER_SITES= http://www.tcs.hut.fi/Software/bliss/ PKGNAMESUFFIX= -graph-tool @@ -17,7 +18,7 @@ MAKE_ARGS= CC=${CXX} do-install: ${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${STAGEDIR}${PREFIX}/bin - ${INSTALL_DATA} ${WRKSRC}/libbliss.a ${STAGEDIR}${PREFIX}/lib + ${INSTALL_LIB} ${WRKSRC}/libbliss.so ${STAGEDIR}${PREFIX}/lib ${MKDIR} ${STAGEDIR}${PREFIX}/include/${PORTNAME} ${CP} ${WRKSRC}/*.hh ${WRKSRC}/*.h ${STAGEDIR}${PREFIX}/include/${PORTNAME} diff --git a/math/bliss/files/patch-Makefile b/math/bliss/files/patch-Makefile index c7f1b6191347..8d167b219a34 100644 --- a/math/bliss/files/patch-Makefile +++ b/math/bliss/files/patch-Makefile @@ -13,3 +13,22 @@ #CFLAGS += -DBLISS_DEBUG CFLAGS += -fPIC +@@ -20,7 +20,7 @@ AR = ar + CC = g++ + RANLIB = ranlib + AR = ar +-BLISSLIB = libbliss.a ++BLISSLIB = libbliss.so + + gmp: LIB += -lgmp + gmp: CFLAGS += -DBLISS_USE_GMP +@@ -36,8 +36,7 @@ lib: $(OBJS) + + lib: $(OBJS) + rm -f $(BLISSLIB) +- $(AR) cr $(BLISSLIB) $(OBJS) +- $(RANLIB) $(BLISSLIB) ++ $(CC) -shared $(LDFLAGS) -o $(BLISSLIB) $(OBJS) + + lib_gmp: $(GMPOBJS) + rm -f $(BLISSLIB) diff --git a/math/bliss/pkg-plist b/math/bliss/pkg-plist index 11d8c8c9a877..67c7120168c9 100644 --- a/math/bliss/pkg-plist +++ b/math/bliss/pkg-plist @@ -11,4 +11,4 @@ include/bliss/partition.hh include/bliss/timer.hh include/bliss/uintseqhash.hh include/bliss/utils.hh -lib/libbliss.a +lib/libbliss.so diff --git a/math/cmlib/Makefile b/math/cmlib/Makefile index 3599124178f7..0367be773c87 100644 --- a/math/cmlib/Makefile +++ b/math/cmlib/Makefile @@ -18,16 +18,22 @@ USE_LDCONFIG= yes SHLIB_MAJOR= 1 LDFLAGS+= ${FFLAGS} -LDADD ?= -lgfortran -lm +LDADD= -lm SRCCONF= /dev/null MAKE_ENV= LDADD="${LDADD}" SHLIB_MAJOR="${SHLIB_MAJOR}" \ SRCCONF="${SRCCONF}" -FFLAGS+= -std=legacy NO_WRKSUBDIR= yes OPTIONS_DEFINE= DOCS +.include <bsd.port.pre.mk> + +.if ${FORTRAN_DEFAULT} != flang +FFLAGS+= -std=legacy +LDADD+= -lgfortran +.endif + post-extract: ${CP} ${_DISTDIR}/[dir]1mach.f ${WRKSRC}/src/machcon ${CP} ${FILESDIR}/make.inc ${WRKSRC} @@ -49,4 +55,4 @@ do-install-DOCS-on: ${MKDIR} ${STAGEDIR}${DOCSDIR} (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) -.include <bsd.port.mk> +.include <bsd.port.post.mk> diff --git a/math/coin-or-metis/Makefile b/math/coin-or-metis/Makefile index 427f7dfdbaaa..2233cf802593 100644 --- a/math/coin-or-metis/Makefile +++ b/math/coin-or-metis/Makefile @@ -24,6 +24,9 @@ GH_PROJECT= ThirdParty-Metis GNU_CONFIGURE= yes +# Adaption of the upstream fix for Clang/Flang +# https://github.com/coin-or-tools/ThirdParty-Metis/commit/5ace49007591f11b64f70183102549d3a9721d4b +CFLAGS= -Wno-implicit-function-declaration INSTALL_TARGET= install-strip METIS_VERSION= 4.0.3 # from the script get.Metis diff --git a/math/hsl/Makefile b/math/hsl/Makefile index c19d7dae3f87..f86dcd5285ec 100644 --- a/math/hsl/Makefile +++ b/math/hsl/Makefile @@ -10,7 +10,9 @@ WWW= https://github.com/coin-or-tools/ThirdParty-HSL LICENSE= EPL -USES= fortran gmake libtool pkgconfig +# Flang can't be used because the project bundles too old libtool and +# running autoreconf is too painful +USES= fortran:gfortran gmake libtool pkgconfig USE_LDCONFIG= yes USE_GITHUB= yes diff --git a/math/lean4/Makefile b/math/lean4/Makefile index 8ac3190497f2..08ab12311304 100644 --- a/math/lean4/Makefile +++ b/math/lean4/Makefile @@ -11,6 +11,7 @@ WWW= https://lean-lang.org/ \ LICENSE= APACHE20 LICENSE_FILE= ${WRKSRC}/LICENSE +BROKEN_FreeBSD_13= compilation fails: error: use of undeclared identifier 'clearenv' BROKEN_armv7= compilation fails: ../../.build/stage1/lib/temp/Init/Coe.depend: No such file or directory BROKEN_i386= linking fails: INTERNAL PANIC: out of memory (during: Linking runLinter) diff --git a/math/mlpack/Makefile b/math/mlpack/Makefile index 264f0208a178..c614af9212fe 100644 --- a/math/mlpack/Makefile +++ b/math/mlpack/Makefile @@ -11,6 +11,7 @@ WWW= https://www.mlpack.org/ \ LICENSE= BSD3CLAUSE LICENSE_FILE= ${WRKSRC}/LICENSE.txt +BROKEN_FreeBSD_13= compilation fails with clang-19, see https://github.com/mlpack/mlpack/issues/3825 BROKEN_FreeBSD_15= compilation fails with clang-19, see https://github.com/mlpack/mlpack/issues/3825 BROKEN_i386= undefined symbol: __atomic_load diff --git a/math/octave-forge-image/Makefile b/math/octave-forge-image/Makefile index f9abe718eec9..d8000dbcbe8c 100644 --- a/math/octave-forge-image/Makefile +++ b/math/octave-forge-image/Makefile @@ -1,5 +1,5 @@ PORTNAME= octave-forge-image -PORTVERSION= 2.18.0 +PORTVERSION= 2.18.1 CATEGORIES= math MASTER_SITES= SF/octave/Octave%20Forge%20Packages/Individual%20Package%20Releases DISTNAME= ${OCTAVE_PKGNAME}-${DISTVERSIONFULL} diff --git a/math/octave-forge-image/distinfo b/math/octave-forge-image/distinfo index 5188034df013..c816ce3b8a9a 100644 --- a/math/octave-forge-image/distinfo +++ b/math/octave-forge-image/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1755636185 -SHA256 (octave-forge/image-2.18.0.tar.gz) = d87af2b098a03b3fe78d05fe623cff49765f87251c0090769e214bbbc6569a00 -SIZE (octave-forge/image-2.18.0.tar.gz) = 477488 +TIMESTAMP = 1757075144 +SHA256 (octave-forge/image-2.18.1.tar.gz) = d4eed0579782c2efaa0818de2f20f13b276eb3d4b4b3d63347c7317d84e29531 +SIZE (octave-forge/image-2.18.1.tar.gz) = 477118 diff --git a/math/polymake/Makefile b/math/polymake/Makefile index 193dc3bf8ab4..b0a90401376f 100644 --- a/math/polymake/Makefile +++ b/math/polymake/Makefile @@ -1,6 +1,6 @@ PORTNAME= polymake DISTVERSION= 4.13 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math MASTER_SITES= https://github.com/${PORTNAME}/${PORTNAME}/releases/download/V${DISTVERSION}/ \ https://polymake.org/lib/exe/fetch.php/download/ @@ -93,7 +93,7 @@ TESTS_DESC= Run bundled self tests after build BLISS_CONFIGURE_ON= --with-bliss=${LOCALBASE} BLISS_CONFIGURE_OFF= --without-bliss -BLISS_BUILD_DEPENDS= bliss-graph-tool>=0.73:math/bliss +BLISS_BUILD_DEPENDS= bliss-graph-tool>=0.73:math/bliss # does it need the tool or the library? LIB_DEPENDS should be used in the latter case. BLISS_RUN_DEPENDS= bliss-graph-tool>=0.73:math/bliss NAUTY_CONFIGURE_ON= --with-nauty=${LOCALBASE} diff --git a/math/py-modin/Makefile b/math/py-modin/Makefile index 07ef57565dc7..eae7c2b925d7 100644 --- a/math/py-modin/Makefile +++ b/math/py-modin/Makefile @@ -1,5 +1,5 @@ PORTNAME= modin -PORTVERSION= 0.34.1 +PORTVERSION= 0.35.0 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -17,7 +17,7 @@ BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLA RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}fsspec>=2022.11.0:filesystems/py-fsspec@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}numpy>=1.22.4,1:math/py-numpy@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}packaging>=21.0:devel/py-packaging@${PY_FLAVOR} \ - ${PYTHON_PKGNAMEPREFIX}pandas>=2.2,1<2.3,1:math/py-pandas@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pandas>=2.2,1<2.4,1:math/py-pandas@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}psutil>=5.8.0:sysutils/py-psutil@${PY_FLAVOR} USES= python diff --git a/math/py-modin/distinfo b/math/py-modin/distinfo index bf98632db566..d54f58d558f9 100644 --- a/math/py-modin/distinfo +++ b/math/py-modin/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1752266154 -SHA256 (modin-0.34.1.tar.gz) = 421b498f0cca4be41241936d051602603715f06e1568307b8b52fcd98ed75263 -SIZE (modin-0.34.1.tar.gz) = 892196 +TIMESTAMP = 1757120786 +SHA256 (modin-0.35.0.tar.gz) = bec0d4a42055c9dc146a04aef1dd8f0356d7c39a554426de29d3fb0e5091a3d1 +SIZE (modin-0.35.0.tar.gz) = 897186 diff --git a/math/py-narwhals/Makefile b/math/py-narwhals/Makefile index ab28d85e5398..959375b249a3 100644 --- a/math/py-narwhals/Makefile +++ b/math/py-narwhals/Makefile @@ -1,5 +1,5 @@ PORTNAME= narwhals -PORTVERSION= 2.1.1 +PORTVERSION= 2.2.0 CATEGORIES= math python MASTER_SITES= PYPI \ https://github.com/narwhals-dev/narwhals/releases/download/v${PORTVERSION}/ diff --git a/math/py-narwhals/distinfo b/math/py-narwhals/distinfo index 8faf1ed4c142..64de8e806eaa 100644 --- a/math/py-narwhals/distinfo +++ b/math/py-narwhals/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1755062570 -SHA256 (narwhals-2.1.1.tar.gz) = 308ec9d0e40616b66b61cd76ede4083a4232ae04942a3acef7e514d49641cb77 -SIZE (narwhals-2.1.1.tar.gz) = 529925 +TIMESTAMP = 1757120788 +SHA256 (narwhals-2.2.0.tar.gz) = f6a34f2699acabe2c17339c104f0bec28b9f7a55fbc7f8d485d49bea72d12b8a +SIZE (narwhals-2.2.0.tar.gz) = 547070 diff --git a/math/py-pyreadstat/Makefile b/math/py-pyreadstat/Makefile index d948c77b4952..89f5c1217df5 100644 --- a/math/py-pyreadstat/Makefile +++ b/math/py-pyreadstat/Makefile @@ -1,5 +1,5 @@ PORTNAME= pyreadstat -PORTVERSION= 1.3.0 +PORTVERSION= 1.3.1 CATEGORIES= math python MASTER_SITES= PYPI PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -14,7 +14,8 @@ LICENSE_FILE= ${WRKSRC}/LICENSE BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}setuptools>=0:devel/py-setuptools@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}wheel>=0:devel/py-wheel@${PY_FLAVOR} -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pandas>=1.2.0,1:math/py-pandas@${PY_FLAVOR} +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}narwhals>=2.0:math/py-narwhals@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}numpy>=0,1:math/py-numpy@${PY_FLAVOR} USES= python USE_PYTHON= autoplist concurrent cython3 pep517 diff --git a/math/py-pyreadstat/distinfo b/math/py-pyreadstat/distinfo index 333820b5c423..6c4da3f3c0f6 100644 --- a/math/py-pyreadstat/distinfo +++ b/math/py-pyreadstat/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1751208170 -SHA256 (pyreadstat-1.3.0.tar.gz) = faddb9086797b24ff8f0540b8493ef5875620384e065a2d212f94295f69517a4 -SIZE (pyreadstat-1.3.0.tar.gz) = 566015 +TIMESTAMP = 1757120790 +SHA256 (pyreadstat-1.3.1.tar.gz) = 5e22b4000570cc0b0b850c7fedc13129546729ca413d67697ede0074423b1ef6 +SIZE (pyreadstat-1.3.1.tar.gz) = 610773 diff --git a/math/scalapack/Makefile b/math/scalapack/Makefile index 0a5668a213eb..c9020ac6731d 100644 --- a/math/scalapack/Makefile +++ b/math/scalapack/Makefile @@ -1,5 +1,6 @@ PORTNAME= scalapack PORTVERSION= 2.2.2 +PORTREVISION= 1 DISTVERSIONPREFIX= v CATEGORIES= math @@ -60,7 +61,7 @@ FFLAGS+= ${FPIC} LDFLAGS+= ${MPI_LIBS} SVERSION= ${PORTVERSION:R:R} -.if ${GCC_DEFAULT} >= 10 +.if ${FORTRAN_DEFAULT} == gfortran && ${GCC_DEFAULT} >= 10 # workaround for Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1) FFLAGS+= -fallow-argument-mismatch .endif diff --git a/math/scalapack/files/patch-BLACS_SRC_Bdef.h b/math/scalapack/files/patch-BLACS_SRC_Bdef.h new file mode 100644 index 000000000000..7845091f1e18 --- /dev/null +++ b/math/scalapack/files/patch-BLACS_SRC_Bdef.h @@ -0,0 +1,18 @@ +--- BLACS/SRC/Bdef.h.orig 2024-08-06 11:44:11 UTC ++++ BLACS/SRC/Bdef.h +@@ -129,6 +129,15 @@ Int BI_ContxtNum(BLACSCONTEXT *ctxt); + void BI_BlacsWarn(Int ConTxt, Int line, char *file, char *form, ...); + void BI_BlacsErr(Int ConTxt, Int line, char *file, char *form, ...); + Int BI_ContxtNum(BLACSCONTEXT *ctxt); ++void BI_TransDist(BLACSCONTEXT *ctxt, char scope, Int m, Int n, Int *rA, ++ Int *cA, Int ldrc, BI_DistType *dist, Int rdest, Int cdest); ++void BI_dmvcopy(Int m, Int n, double *A, Int lda, double *buff); ++void BI_dvmcopy(Int m, Int n, double *A, Int lda, double *buff); ++void BI_imvcopy(Int m, Int n, Int *A, Int lda, Int *buff); ++void BI_ivmcopy(Int m, Int n, Int *A, Int lda, Int *buff); ++void BI_smvcopy(Int m, Int n, float *A, Int lda, float *buff); ++void BI_svmcopy(Int m, Int n, float *A, Int lda, float *buff); ++void Cblacs_pinfo(Int *mypnum, Int *nprocs); + + /* + * If we've got an ANSI standard C compiler, we can use void pointers... diff --git a/math/scalapack/files/patch-BLACS_SRC_blacs__init__.c b/math/scalapack/files/patch-BLACS_SRC_blacs__init__.c new file mode 100644 index 000000000000..642edde152d9 --- /dev/null +++ b/math/scalapack/files/patch-BLACS_SRC_blacs__init__.c @@ -0,0 +1,15 @@ +--- BLACS/SRC/blacs_init_.c.orig 2024-08-06 11:44:11 UTC ++++ BLACS/SRC/blacs_init_.c +@@ -6,7 +6,12 @@ F_VOID_FUNC blacs_gridinit_(Int *ConTxt, F_CHAR order, + F_VOID_FUNC blacs_gridinit_(Int *ConTxt, F_CHAR order, Int *nprow, Int *npcol) + #endif + { ++#if (INTFACE == C_CALL) + void Cblacs_gridmap(Int *, Int *, Int, Int, Int); ++#else ++ F_VOID_FUNC blacs_gridmap_(Int *ConTxt, Int *usermap, Int *ldup, Int *nprow0, ++ Int *npcol0); ++#endif + Int *tmpgrid, *iptr; + Int i, j; + diff --git a/math/scalapack/files/patch-CMakeLists.txt b/math/scalapack/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..133cf6b18859 --- /dev/null +++ b/math/scalapack/files/patch-CMakeLists.txt @@ -0,0 +1,10 @@ +--- CMakeLists.txt.orig 2025-09-05 14:39:41 UTC ++++ CMakeLists.txt +@@ -239,6 +239,7 @@ if (NOT MSVC) + append_subdir_files(src-C "SRC") + + if (NOT MSVC) ++ set_source_files_properties(TOOLS/SL_gridreshape.c PROPERTIES COMPILE_OPTIONS "-Wno-error=implicit-function-declaration") + add_library(scalapack ${blacs} ${tools} ${tools-C} ${extra_lapack} ${pblas} ${pblas-F} ${ptzblas} ${ptools} ${pbblas} ${redist} ${src} ${src-C}) + set_target_properties(scalapack PROPERTIES + VERSION ${SCALAPACK_VERSION} diff --git a/math/scalapack/files/patch-gridmap b/math/scalapack/files/patch-gridmap new file mode 100644 index 000000000000..f442271f2045 --- /dev/null +++ b/math/scalapack/files/patch-gridmap @@ -0,0 +1,120 @@ +--- REDIST/SRC/pcgemr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pcgemr.c +@@ -194,6 +194,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pctrmr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pctrmr.c +@@ -209,6 +209,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pdgemr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pdgemr.c +@@ -191,6 +191,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pdtrmr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pdtrmr.c +@@ -206,6 +206,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pigemr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pigemr.c +@@ -191,6 +191,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pitrmr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pitrmr.c +@@ -206,6 +206,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/psgemr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/psgemr.c +@@ -191,6 +191,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pstrmr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pstrmr.c +@@ -206,6 +206,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pzgemr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pzgemr.c +@@ -194,6 +194,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- REDIST/SRC/pztrmr.c.orig 2024-08-06 11:44:11 UTC ++++ REDIST/SRC/pztrmr.c +@@ -209,6 +209,7 @@ extern void Cblacs_gridinit(); + extern void Cblacs_pinfo(); + extern void Cblacs_gridinfo(); + extern void Cblacs_gridinit(); ++extern void Cblacs_gridmap(); + extern void Cblacs_exit(); + extern void Cblacs_gridexit(); + extern void Cblacs_setup(); +--- SRC/pcrot.c.orig 2024-08-06 11:44:11 UTC ++++ SRC/pcrot.c +@@ -190,6 +190,7 @@ void pcrot_( Int *n, complex X[], Int *ix, Int *jx, In + F_INTG_FCT pbctrnv_(); + F_INTG_FCT crot_(); + F_INTG_FCT ilcm_(); ++ Int numroc_( Int*, Int*, Int*, Int*, Int* ); + /* .. + * .. Executable Statements .. + * +--- SRC/pzrot.c.orig 2024-08-06 11:44:11 UTC ++++ SRC/pzrot.c +@@ -190,6 +190,7 @@ void pzrot_( Int *n, complex16 X[], Int *ix, Int *jx, + F_INTG_FCT pbztrnv_(); + F_INTG_FCT zrot_(); + F_INTG_FCT ilcm_(); ++ Int numroc_( Int*, Int*, Int*, Int*, Int* ); + /* .. + * .. Executable Statements .. + * diff --git a/math/sympol/Makefile b/math/sympol/Makefile index 4bc3c85b1174..c7fc1bbe9199 100644 --- a/math/sympol/Makefile +++ b/math/sympol/Makefile @@ -1,7 +1,7 @@ PORTNAME= sympol DISTVERSIONPREFIX= v DISTVERSION= 0.1.9 -PORTREVISION= 14 +PORTREVISION= 15 CATEGORIES= math MAINTAINER= yuri@FreeBSD.org @@ -11,9 +11,9 @@ WWW= https://www.math.uni-rostock.de/~rehn/software/sympol.html LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/COPYING -BUILD_DEPENDS= ${LOCALBASE}/lib/libbliss.a:math/bliss \ - permlib>0:math/permlib -LIB_DEPENDS= libboost_program_options.so:devel/boost-libs \ +BUILD_DEPENDS= permlib>0:math/permlib +LIB_DEPENDS= libbliss.so:math/bliss \ + libboost_program_options.so:devel/boost-libs \ libcddgmp.so:math/cddlib \ libgmp.so:math/gmp |