diff options
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/treeviewx/Makefile | 21 | ||||
| -rw-r--r-- | biology/treeviewx/distinfo | 1 | ||||
| -rw-r--r-- | biology/treeviewx/files/patch-Makefile.am | 11 | ||||
| -rw-r--r-- | biology/treeviewx/files/patch-Makefile.in | 28 | ||||
| -rw-r--r-- | biology/treeviewx/files/patch-configure | 10 | ||||
| -rw-r--r-- | biology/treeviewx/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/treeviewx/pkg-descr | 8 | ||||
| -rw-r--r-- | biology/treeviewx/pkg-plist | 1 |
9 files changed, 82 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index cf7c424947ae..2b424f67029d 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -39,6 +39,7 @@ SUBDIR += seaview SUBDIR += sim4 SUBDIR += tinker + SUBDIR += treeviewx SUBDIR += xdrawchem SUBDIR += xmolwt diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile new file mode 100644 index 000000000000..ca08369c2c1d --- /dev/null +++ b/biology/treeviewx/Makefile @@ -0,0 +1,21 @@ +# Ports collection makefile for: treeviewx +# Date created: 04 August 2001 +# Whom: tonym +# +# $FreeBSD$ +# + +PORTNAME= treeviewx +PORTVERSION= 0.1.1 +CATEGORIES= biology +MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ +DISTNAME= tv-${PORTVERSION} + +MAINTAINER= tonym@biolateral.com.au + +LIB_DEPENDS= wx_gtk.2:${PORTSDIR}/x11-toolkits/wxgtk + +USE_GMAKE= yes +GNU_CONFIGURE= yes + +.include <bsd.port.mk> diff --git a/biology/treeviewx/distinfo b/biology/treeviewx/distinfo new file mode 100644 index 000000000000..90645024694c --- /dev/null +++ b/biology/treeviewx/distinfo @@ -0,0 +1 @@ +MD5 (tv-0.1.1.tar.gz) = 8cb3111130fa4623fb74d458659516fc diff --git a/biology/treeviewx/files/patch-Makefile.am b/biology/treeviewx/files/patch-Makefile.am new file mode 100644 index 000000000000..2aa04c00a381 --- /dev/null +++ b/biology/treeviewx/files/patch-Makefile.am @@ -0,0 +1,11 @@ +--- Makefile.am.orig Sat Aug 4 13:17:56 2001 ++++ Makefile.am Sat Aug 4 13:18:17 2001 +@@ -125,7 +125,7 @@ + + + all: +- cd ncl-2.0/src; make libncl.a; # Paul Lewis Nexus Class Library ++ cd ncl-2.0/src; $(MAKE) libncl.a; # Paul Lewis Nexus Class Library + + ${MAKE} $(PROGRAM); + diff --git a/biology/treeviewx/files/patch-Makefile.in b/biology/treeviewx/files/patch-Makefile.in new file mode 100644 index 000000000000..c443674c804f --- /dev/null +++ b/biology/treeviewx/files/patch-Makefile.in @@ -0,0 +1,28 @@ +--- Makefile.in.orig Sat Aug 4 05:09:46 2001 ++++ Makefile.in Sat Aug 4 15:45:59 2001 +@@ -263,7 +263,7 @@ + $(CC) -c $(CFLAGS) -I$(NCLDIR) -I$(TREELIBDIR) -I$(GPORTDIR) -DUSE_WXWINDOWS -o $@ $< + + all: +- cd ncl-2.0/src; make libncl.a; # Paul Lewis Nexus Class Library ++ cd ncl-2.0/src; $(MAKE) libncl.a; # Paul Lewis Nexus Class Library + + ${MAKE} $(PROGRAM); + +@@ -273,6 +273,16 @@ + tview.o : tview.cpp tview.h tproject.h + tv.o : tv.cpp tv.h tdoc.h tview.h tproject.h + tdoc.o: tdoc.cpp tdoc.h tview.h ++ ++install : $(PROGRAM) ++ $(mkinstalldirs) $(DESTDIR)$(bindir) ++ @list='$(PROGRAM)'; for p in $$list; do \ ++ if test -f $$p; then \ ++ echo " $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)'`"; \ ++ $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)' `; \ ++ else :; fi; \ ++ done ++ + + # Tell versions [3.59,3.63) of GNU make to not export all variables. + # Otherwise a system limit (for SysV at least) may be exceeded. diff --git a/biology/treeviewx/files/patch-configure b/biology/treeviewx/files/patch-configure new file mode 100644 index 000000000000..e205838a6d41 --- /dev/null +++ b/biology/treeviewx/files/patch-configure @@ -0,0 +1,10 @@ +--- configure.orig Thu Aug 16 15:55:01 2001 ++++ configure Thu Aug 16 15:55:13 2001 +@@ -520,7 +520,6 @@ + ac_n= ac_c='\c' ac_t= + fi + +- (tview.cpp) + ac_aux_dir= + for ac_dir in $srcdir $srcdir/.. $srcdir/../..; do + if test -f $ac_dir/install-sh; then diff --git a/biology/treeviewx/pkg-comment b/biology/treeviewx/pkg-comment new file mode 100644 index 000000000000..727dcca534d0 --- /dev/null +++ b/biology/treeviewx/pkg-comment @@ -0,0 +1 @@ +A phylogenetic tree viewer diff --git a/biology/treeviewx/pkg-descr b/biology/treeviewx/pkg-descr new file mode 100644 index 000000000000..c664fd364a8c --- /dev/null +++ b/biology/treeviewx/pkg-descr @@ -0,0 +1,8 @@ +"TreeView X is program to display phylogenetic trees on Unix-like platforms. +It can read and display NEXUS and Newick format tree files (such as those +output by PAUP*, ClustalX, TREE-PUZZLE, and other programs)." + +WWW: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ + +-- +Tony Maher <tonym@biolateral.com.au> diff --git a/biology/treeviewx/pkg-plist b/biology/treeviewx/pkg-plist new file mode 100644 index 000000000000..1a3fda3a4d6a --- /dev/null +++ b/biology/treeviewx/pkg-plist @@ -0,0 +1 @@ +bin/tv |