diff options
author | Ying-Chieh Liao <ijliao@FreeBSD.org> | 2002-07-22 06:52:25 +0000 |
---|---|---|
committer | Ying-Chieh Liao <ijliao@FreeBSD.org> | 2002-07-22 06:52:25 +0000 |
commit | 6915f3f05b23bd5af4f54b7945017238aa707e70 (patch) | |
tree | a1c71e1f6b492248e9bcf1ee037029e6d698f2f2 /science | |
parent | Upgrade to 5.0.2. (diff) |
add bblimage 0.66
A set of software tools for medical image processing
Notes
Notes:
svn path=/head/; revision=63376
Diffstat (limited to 'science')
-rw-r--r-- | science/Makefile | 1 | ||||
-rw-r--r-- | science/bblimage/Makefile | 31 | ||||
-rw-r--r-- | science/bblimage/distinfo | 1 | ||||
-rw-r--r-- | science/bblimage/pkg-comment | 1 | ||||
-rw-r--r-- | science/bblimage/pkg-descr | 10 | ||||
-rw-r--r-- | science/bblimage/pkg-plist | 24 | ||||
-rw-r--r-- | science/pyvox/Makefile | 31 | ||||
-rw-r--r-- | science/pyvox/distinfo | 1 | ||||
-rw-r--r-- | science/pyvox/pkg-comment | 1 | ||||
-rw-r--r-- | science/pyvox/pkg-descr | 10 | ||||
-rw-r--r-- | science/pyvox/pkg-plist | 24 |
11 files changed, 135 insertions, 0 deletions
diff --git a/science/Makefile b/science/Makefile index 3d8849b72cd4..8f89b642b6b6 100644 --- a/science/Makefile +++ b/science/Makefile @@ -1,6 +1,7 @@ # $FreeBSD$ # + SUBDIR += bblimage SUBDIR += chemtool SUBDIR += clhep SUBDIR += euler diff --git a/science/bblimage/Makefile b/science/bblimage/Makefile new file mode 100644 index 000000000000..6271392638fd --- /dev/null +++ b/science/bblimage/Makefile @@ -0,0 +1,31 @@ +# ex:ts=8 +# Ports collection Makefile for: bblimage +# Date created: Jul 22, 2002 +# Whom: ijliao +# +# $FreeBSD$ +# + +PORTNAME= bblimage +PORTVERSION= 0.66 +CATEGORIES= science +MASTER_SITES= http://www.uphs.upenn.edu/bbl/software/files/ +EXTRACT_SUFX= .src.tgz + +MAINTAINER= ports@FreeBSD.org + +USE_PYTHON= yes +USE_REINPLACE= yes +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --with-lapack --with-python +USE_GMAKE= yes + +MAN1= anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \ + imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \ + vibihist.1 vihist.1 +MAN5= cdata.5 mri_data.5 param.5 + +post-patch: + @${REINPLACE_CMD} -e "s|1\.5|2.2|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in + +.include <bsd.port.mk> diff --git a/science/bblimage/distinfo b/science/bblimage/distinfo new file mode 100644 index 000000000000..f68a65f27535 --- /dev/null +++ b/science/bblimage/distinfo @@ -0,0 +1 @@ +MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c diff --git a/science/bblimage/pkg-comment b/science/bblimage/pkg-comment new file mode 100644 index 000000000000..0c0dfba72789 --- /dev/null +++ b/science/bblimage/pkg-comment @@ -0,0 +1 @@ +A set of software tools for medical image processing diff --git a/science/bblimage/pkg-descr b/science/bblimage/pkg-descr new file mode 100644 index 000000000000..9753cc4f0d55 --- /dev/null +++ b/science/bblimage/pkg-descr @@ -0,0 +1,10 @@ +BBLimage is a set of software tools for medical image processing, particularly +skull stripping and segmentation of MR brain images; tools to support other +applications may be added later. These tools are intended to support +researchers who need to prototype new image analysis algorithms or to develop +automated image analysis tools for specific image analysis applications. The +sequence of processing operations is specified through a scripting language +which can be used interactively or in command files; the language used is an +extension of Python. + +WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/ diff --git a/science/bblimage/pkg-plist b/science/bblimage/pkg-plist new file mode 100644 index 000000000000..2d43acd1cffe --- /dev/null +++ b/science/bblimage/pkg-plist @@ -0,0 +1,24 @@ +bin/anonbblanz +bin/binnseg +bin/conseg +bin/decomment +bin/dumpbblanz +bin/imstack +bin/inleav2 +bin/lovar +bin/rowcol +bin/rpsamp +bin/skmiv +bin/swab +bin/usb2uc +bin/vibihist +bin/vihist +lib/libbbli.so +lib/python2.2/site-packages/exim.so +lib/python2.2/site-packages/optim.py +lib/python2.2/site-packages/optim.pyc +lib/python2.2/site-packages/pyvox.py +lib/python2.2/site-packages/pyvox.pyc +lib/python2.2/site-packages/pyvoxC.so +lib/python2.2/site-packages/regis.py +lib/python2.2/site-packages/regis.pyc diff --git a/science/pyvox/Makefile b/science/pyvox/Makefile new file mode 100644 index 000000000000..6271392638fd --- /dev/null +++ b/science/pyvox/Makefile @@ -0,0 +1,31 @@ +# ex:ts=8 +# Ports collection Makefile for: bblimage +# Date created: Jul 22, 2002 +# Whom: ijliao +# +# $FreeBSD$ +# + +PORTNAME= bblimage +PORTVERSION= 0.66 +CATEGORIES= science +MASTER_SITES= http://www.uphs.upenn.edu/bbl/software/files/ +EXTRACT_SUFX= .src.tgz + +MAINTAINER= ports@FreeBSD.org + +USE_PYTHON= yes +USE_REINPLACE= yes +GNU_CONFIGURE= yes +CONFIGURE_ARGS= --with-lapack --with-python +USE_GMAKE= yes + +MAN1= anonbblanz.1 bblimage.1 binnseg.1 conseg.1 decomment.1 dumpbblanz.1 \ + imstack.1 inleav2.1 lovar.1 qdv.1 rpsamp.1 skmiv.1 swab.1 usb2uc.1 \ + vibihist.1 vihist.1 +MAN5= cdata.5 mri_data.5 param.5 + +post-patch: + @${REINPLACE_CMD} -e "s|1\.5|2.2|g" ${WRKSRC}/configure ${WRKSRC}/Makefile.in + +.include <bsd.port.mk> diff --git a/science/pyvox/distinfo b/science/pyvox/distinfo new file mode 100644 index 000000000000..f68a65f27535 --- /dev/null +++ b/science/pyvox/distinfo @@ -0,0 +1 @@ +MD5 (bblimage-0.66.src.tgz) = 9b01e8128c4009984300453ee00d601c diff --git a/science/pyvox/pkg-comment b/science/pyvox/pkg-comment new file mode 100644 index 000000000000..0c0dfba72789 --- /dev/null +++ b/science/pyvox/pkg-comment @@ -0,0 +1 @@ +A set of software tools for medical image processing diff --git a/science/pyvox/pkg-descr b/science/pyvox/pkg-descr new file mode 100644 index 000000000000..9753cc4f0d55 --- /dev/null +++ b/science/pyvox/pkg-descr @@ -0,0 +1,10 @@ +BBLimage is a set of software tools for medical image processing, particularly +skull stripping and segmentation of MR brain images; tools to support other +applications may be added later. These tools are intended to support +researchers who need to prototype new image analysis algorithms or to develop +automated image analysis tools for specific image analysis applications. The +sequence of processing operations is specified through a scripting language +which can be used interactively or in command files; the language used is an +extension of Python. + +WWW: http://www.uphs.upenn.edu/bbl/software/bblimage/ diff --git a/science/pyvox/pkg-plist b/science/pyvox/pkg-plist new file mode 100644 index 000000000000..2d43acd1cffe --- /dev/null +++ b/science/pyvox/pkg-plist @@ -0,0 +1,24 @@ +bin/anonbblanz +bin/binnseg +bin/conseg +bin/decomment +bin/dumpbblanz +bin/imstack +bin/inleav2 +bin/lovar +bin/rowcol +bin/rpsamp +bin/skmiv +bin/swab +bin/usb2uc +bin/vibihist +bin/vihist +lib/libbbli.so +lib/python2.2/site-packages/exim.so +lib/python2.2/site-packages/optim.py +lib/python2.2/site-packages/optim.pyc +lib/python2.2/site-packages/pyvox.py +lib/python2.2/site-packages/pyvox.pyc +lib/python2.2/site-packages/pyvoxC.so +lib/python2.2/site-packages/regis.py +lib/python2.2/site-packages/regis.pyc |