- Update to 1.10.0

- Add LICENSE_FILE - Remove outdated PORTSCOUT - Re-enable SZIP option by default: it was changed unintentionally in r398300 Changes: https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.0/src/hdf5-1.10.0-RELEASE.txt https://www.hdfgroup.org/HDF5/doc/ADGuide/Changes.html
author: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> 2016-04-20 20:42:39 +0000
committer: Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org> 2016-04-20 20:42:39 +0000
commit: 9a1f45d861fd9951b415a972e56137a34b4bd1be (patch)
tree: 0d93d8b3173ba1999f1a826b0d19eaa1e23c4444 /science
parent: - Fix build on 11-CURRENT (diff)
18 files changed, 46 insertions, 51 deletions
diff --git a/science/InsightToolkit/Makefile b/science/InsightToolkit/Makefile
index e5312c14d30a..38d1f1b2e3b1 100644
--- a/science/InsightToolkit/Makefile
+++ b/science/InsightToolkit/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	InsightToolkit
 PORTVERSION=	4.9.0
+PORTREVISION=	1
 CATEGORIES=	science biology
 MASTER_SITES=	SF/itk/itk/4.9
 
diff --git a/science/cdo/Makefile b/science/cdo/Makefile
index a8f4cbab7a9f..4bf4775b5269 100644
--- a/science/cdo/Makefile
+++ b/science/cdo/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	cdo
 PORTVERSION=	1.7.1
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	https://code.zmaw.de/attachments/download/12070/ \
 		LOCAL/sunpoet
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index ea7b26489b95..691a86e04d52 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	cgnslib
 DISTVERSION=	3.2.1
-PORTREVISION=	4
+PORTREVISION=	5
 PORTEPOCH=	1
 CATEGORIES=	science
 MASTER_SITES=	SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/ecs/Makefile b/science/ecs/Makefile
index 553535f67ff5..a3daddb21695 100644
--- a/science/ecs/Makefile
+++ b/science/ecs/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	ecs
 PORTVERSION=	2.0.4
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index c8d52fa5df93..8a53a2a60337 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	fvm
 PORTVERSION=	0.15.5
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science parallel
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index f79a88ab272d..f546afab7517 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	gnudatalanguage
 DISTVERSION=	0.9.6v2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science lang
 MASTER_SITES=	SF/${PORTNAME}/gdl/${PORTVERSION:R}
 .if defined(BUILD_PYTHON_MODULE)
diff --git a/science/h5utils/Makefile b/science/h5utils/Makefile
index 0bc90da9019b..9ed5b6a089c5 100644
--- a/science/h5utils/Makefile
+++ b/science/h5utils/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	h5utils
 PORTVERSION=	1.12.1
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/${PORTNAME}/
 
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index d4ae97cb768f..a8dbdb981970 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -2,27 +2,22 @@
 # $FreeBSD$
 
 PORTNAME=	hdf5
-PORTVERSION=	1.8.15
-DISTVERSIONSUFFIX=	-patch1
-PORTREVISION=	1
+PORTVERSION=	1.10.0
 CATEGORIES=	science archivers graphics
-MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF5/current/src/ \
-		ftp://ftp.hdfgroup.org/HDF5/current/src/ \
-		http://www.hdfgroup.org/ftp/HDF5/releases/${DISTNAME}/src/ \
-		ftp://ftp.hdfgroup.org/HDF5/releases/${DISTNAME}/src/ \
+MASTER_SITES=	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
+		ftp://www.hdfgroup.org/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
 		LOCAL/sunpoet
 
 MAINTAINER=	sunpoet@FreeBSD.org
 COMMENT=	Hierarchical Data Format library (from NCSA)
 
 LICENSE=	BSD4CLAUSE
+LICENSE_FILE=	${WRKSRC}/COPYING
 
 CONFLICTS_INSTALL=	hdf-4.[0-9]* hdf5-1.6.[0-9]*
 
-PORTSCOUT=	skipv:1.8.15-patch1
-
 OPTIONS_DEFINE=	DEBUG EXAMPLES FORTRAN SZIP
-#OPTIONS_DEFAULT=SZIP
+OPTIONS_DEFAULT=SZIP
 OPTIONS_SUB=	yes
 
 CONFIGURE_ARGS=	--enable-cxx \
@@ -41,11 +36,10 @@ PORTEXAMPLES=	*
 NOT_FOR_ARCHS=	sparc64
 NOT_FOR_ARCHS_REASON=	does not compile
 
-DEBUG_CONFIGURE_OFF=	--enable-production
-DEBUG_CONFIGURE_ON=	--disable-production --enable-debug=all
+DEBUG_CONFIGURE_OFF=	--enable-build-mode=production
+DEBUG_CONFIGURE_ON=	--enable-build-mode=debug
+FORTRAN_CONFIGURE_ENABLE=	fortran
 FORTRAN_CONFIGURE_ENV=	F9X=${FC}
-FORTRAN_CONFIGURE_OFF=	--disable-fortran --disable-fortran2003
-FORTRAN_CONFIGURE_ON=	--enable-fortran --enable-fortran2003
 FORTRAN_USES=		fortran
 SZIP_CONFIGURE_ON=	--with-szlib=${LOCALBASE}
 SZIP_LIB_DEPENDS=	libsz.so:science/szip
diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo
index 5d54379cc3a1..ff09f8e78c8e 100644
--- a/science/hdf5/distinfo
+++ b/science/hdf5/distinfo
@@ -1,2 +1,2 @@
-SHA256 (hdf5-1.8.15-patch1.tar.bz2) = a5afc630c4443547fff15e9637b5b10404adbed4c00206d89517d32d6668fb32
-SIZE (hdf5-1.8.15-patch1.tar.bz2) = 10006036
+SHA256 (hdf5-1.10.0.tar.bz2) = 31ff70dc7c7317066ab3bda3eec4498a8b099c69c1271b008ed3df388e743d28
+SIZE (hdf5-1.10.0.tar.bz2) = 11239053
diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist
index 243b7b74cd1e..64807b2e02cf 100644
--- a/science/hdf5/pkg-plist
+++ b/science/hdf5/pkg-plist
@@ -2,11 +2,13 @@ bin/gif2h5
 bin/h52gif
 bin/h5c++
 bin/h5cc
+bin/h5clear
 bin/h5copy
 bin/h5debug
 bin/h5diff
 bin/h5dump
 %%FORTRAN%%bin/h5fc
+bin/h5format_convert
 bin/h5import
 bin/h5jam
 bin/h5ls
@@ -17,6 +19,7 @@ bin/h5repack
 bin/h5repart
 bin/h5stat
 bin/h5unjam
+bin/h5watch
 include/H5ACpublic.h
 include/H5AbstractDs.h
 include/H5Apublic.h
@@ -63,12 +66,14 @@ include/H5IdComponent.h
 include/H5Include.h
 include/H5IntType.h
 include/H5Ipublic.h
+include/H5LDpublic.h
 include/H5LTpublic.h
 include/H5Library.h
 include/H5Location.h
 include/H5Lpublic.h
 include/H5MMpublic.h
 include/H5Object.h
+include/H5OcreatProp.h
 include/H5Opublic.h
 include/H5PLextern.h
 include/H5PLpublic.h
@@ -91,37 +96,29 @@ include/H5overflow.h
 include/H5pubconf.h
 include/H5public.h
 include/H5version.h
-%%FORTRAN%%include/h5_dble_interface.mod
+%%FORTRAN%%include/h5_gen.mod
 %%FORTRAN%%include/h5a.mod
-%%FORTRAN%%include/h5a_provisional.mod
 %%FORTRAN%%include/h5d.mod
-%%FORTRAN%%include/h5d_provisional.mod
 %%FORTRAN%%include/h5ds.mod
 %%FORTRAN%%include/h5e.mod
-%%FORTRAN%%include/h5e_provisional.mod
 %%FORTRAN%%include/h5f.mod
-%%FORTRAN%%include/h5f_provisional.mod
+%%FORTRAN%%include/h5fortkit.mod
 %%FORTRAN%%include/h5fortran_types.mod
 %%FORTRAN%%include/h5g.mod
 %%FORTRAN%%include/h5global.mod
 %%FORTRAN%%include/h5i.mod
 %%FORTRAN%%include/h5im.mod
 %%FORTRAN%%include/h5l.mod
-%%FORTRAN%%include/h5l_provisional.mod
 %%FORTRAN%%include/h5lib.mod
-%%FORTRAN%%include/h5lib_provisional.mod
 %%FORTRAN%%include/h5lt.mod
+%%FORTRAN%%include/h5lt_const.mod
 %%FORTRAN%%include/h5o.mod
-%%FORTRAN%%include/h5o_provisional.mod
 %%FORTRAN%%include/h5p.mod
-%%FORTRAN%%include/h5p_provisional.mod
 %%FORTRAN%%include/h5r.mod
-%%FORTRAN%%include/h5r_provisional.mod
 %%FORTRAN%%include/h5s.mod
 %%FORTRAN%%include/h5t.mod
-%%FORTRAN%%include/h5t_provisional.mod
 %%FORTRAN%%include/h5tb.mod
-%%FORTRAN%%include/h5test_kind_storage_size_mod.mod
+%%FORTRAN%%include/h5tb_const.mod
 %%FORTRAN%%include/h5z.mod
 include/hdf5.h
 %%FORTRAN%%include/hdf5.mod
@@ -129,25 +126,25 @@ include/hdf5_hl.h
 lib/libhdf5.a
 lib/libhdf5.settings
 lib/libhdf5.so
-lib/libhdf5.so.10
-lib/libhdf5.so.10.0.1
+lib/libhdf5.so.100
+lib/libhdf5.so.100.0.0
 lib/libhdf5_cpp.a
 lib/libhdf5_cpp.so
-lib/libhdf5_cpp.so.10
-lib/libhdf5_cpp.so.10.0.1
+lib/libhdf5_cpp.so.100
+lib/libhdf5_cpp.so.100.0.0
 %%FORTRAN%%lib/libhdf5_fortran.a
 %%FORTRAN%%lib/libhdf5_fortran.so
-%%FORTRAN%%lib/libhdf5_fortran.so.10
-%%FORTRAN%%lib/libhdf5_fortran.so.10.0.1
+%%FORTRAN%%lib/libhdf5_fortran.so.100
+%%FORTRAN%%lib/libhdf5_fortran.so.100.0.0
 lib/libhdf5_hl.a
 lib/libhdf5_hl.so
-lib/libhdf5_hl.so.10
-lib/libhdf5_hl.so.10.0.1
+lib/libhdf5_hl.so.100
+lib/libhdf5_hl.so.100.0.0
 lib/libhdf5_hl_cpp.a
 lib/libhdf5_hl_cpp.so
-lib/libhdf5_hl_cpp.so.10
-lib/libhdf5_hl_cpp.so.10.0.1
+lib/libhdf5_hl_cpp.so.100
+lib/libhdf5_hl_cpp.so.100.0.0
 %%FORTRAN%%lib/libhdf5hl_fortran.a
 %%FORTRAN%%lib/libhdf5hl_fortran.so
-%%FORTRAN%%lib/libhdf5hl_fortran.so.10
-%%FORTRAN%%lib/libhdf5hl_fortran.so.10.0.1
+%%FORTRAN%%lib/libhdf5hl_fortran.so.100
+%%FORTRAN%%lib/libhdf5hl_fortran.so.100.0.0
diff --git a/science/meep/Makefile b/science/meep/Makefile
index cf8d125db62d..a2e56a495814 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	meep
 PORTVERSION=	1.2.1
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/meep/
 
diff --git a/science/minc2/Makefile b/science/minc2/Makefile
index 3bf793e07690..9fc783fa001b 100644
--- a/science/minc2/Makefile
+++ b/science/minc2/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	minc
 PORTVERSION=	2.2.00
 DISTVERSIONPREFIX=	release-
-PORTREVISION=	3
+PORTREVISION=	4
 PORTEPOCH=	1
 CATEGORIES=	science biology
 PKGNAMESUFFIX=	2
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 7915b427030e..fead0d352576 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mpb
 PORTVERSION=	1.5
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/mpb/
 
diff --git a/science/netcdf/Makefile b/science/netcdf/Makefile
index befec72f8408..3e8812ceb9fe 100644
--- a/science/netcdf/Makefile
+++ b/science/netcdf/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	netcdf
 PORTVERSION=	4.4.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	http://www.unidata.ucar.edu/downloads/netcdf/ftp/ \
 		ftp://ftp.unidata.ucar.edu/pub/netcdf/ \
diff --git a/science/paraview/Makefile b/science/paraview/Makefile
index bdbdb984b254..521f1435aad1 100644
--- a/science/paraview/Makefile
+++ b/science/paraview/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	paraview
 PORTVERSION=	4.3.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science graphics
 MASTER_SITES=	http://www.paraview.org/files/v${VERMAJORMINOR}/
 DISTNAME=	ParaView-v${PORTVERSION}-source
diff --git a/science/py-h5py/Makefile b/science/py-h5py/Makefile
index f4d8c225545e..b1d70ff44730 100644
--- a/science/py-h5py/Makefile
+++ b/science/py-h5py/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	h5py
 PORTVERSION=	2.5.0
+PORTREVISION=	1
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/py-netCDF4/Makefile b/science/py-netCDF4/Makefile
index 6c3d77b9fc7f..646b2f707588 100644
--- a/science/py-netCDF4/Makefile
+++ b/science/py-netCDF4/Makefile
@@ -5,6 +5,7 @@ PORTNAME=	netCDF4
 PORTVERSION=	1.2.4
 DISTVERSIONPREFIX=	v
 DISTVERSIONSUFFIX=	rel
+PORTREVISION=	1
 CATEGORIES=	science python
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
diff --git a/science/silo/Makefile b/science/silo/Makefile
index edf77d682e85..7d82de61c331 100644
--- a/science/silo/Makefile
+++ b/science/silo/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	silo
 PORTVERSION=	4.10
 DISTVERSIONSUFFIX=	-bsd
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 MASTER_SITES=	https://wci.llnl.gov/codes/${PORTNAME}/silo-${PORTVERSION}/
author	Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>	2016-04-20 20:42:39 +0000
committer	Sunpoet Po-Chuan Hsieh <sunpoet@FreeBSD.org>	2016-04-20 20:42:39 +0000
commit	9a1f45d861fd9951b415a972e56137a34b4bd1be (patch)
tree	0d93d8b3173ba1999f1a826b0d19eaa1e23c4444 /science
parent	- Fix build on 11-CURRENT (diff)