Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)

string, generating a Chemistry::Pattern object. It is a file I/O driver for
the PerlMol toolkit.

WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/

PR:		ports/145143
Submitted by:	Steve Wills <steve at mouf.net>

9 files changed, 85 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 327d6eca196c..7edf638a7847 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -110,6 +110,7 @@
     SUBDIR += p5-Chemistry-File-Mopac
     SUBDIR += p5-Chemistry-File-PDB
     SUBDIR += p5-Chemistry-File-SLN
+    SUBDIR += p5-Chemistry-File-SMARTS
     SUBDIR += p5-Chemistry-File-VRML
     SUBDIR += p5-Chemistry-File-XYZ
     SUBDIR += p5-Chemistry-FormulaPattern
diff --git a/science/p5-Chemistry-File-MDLMol/Makefile b/science/p5-Chemistry-File-MDLMol/Makefile
new file mode 100644
index 000000000000..c77ffa60b554
--- /dev/null
+++ b/science/p5-Chemistry-File-MDLMol/Makefile
@@ -0,0 +1,27 @@
+# New ports collection makefile for:	p5-Chemistry-File-MDLMol
+# Date created:		2010-03-10
+# Whom:			Steve Wills <steve@mouf.net>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	Chemistry-File-MDLMol
+PORTVERSION=	0.21
+CATEGORIES=	science perl5
+MASTER_SITES=	CPAN
+MASTER_SITE_SUBDIR=	../../authors/id/I/IT/ITUB
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	steve@mouf.net
+COMMENT=	MDL molfile reader/write
+
+BUILD_DEPENDS=	${SITE_PERL}/Chemistry/Mol.pm:${PORTSDIR}/science/p5-Chemistry-Mol \
+		${SITE_PERL}/Chemistry/Ring/Find.pm:${PORTSDIR}/science/p5-Chemistry-Ring
+RUN_DEPENDS=	${SITE_PERL}/Chemistry/Mol.pm:${PORTSDIR}/science/p5-Chemistry-Mol \
+		${SITE_PERL}/Chemistry/Ring/Find.pm:${PORTSDIR}/science/p5-Chemistry-Ring
+
+MAN3=	Chemistry::File::MDLMol.3 Chemistry::File::SDF.3
+
+PERL_CONFIGURE=	yes
+
+.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-MDLMol/distinfo b/science/p5-Chemistry-File-MDLMol/distinfo
new file mode 100644
index 000000000000..cf9ace007fb1
--- /dev/null
+++ b/science/p5-Chemistry-File-MDLMol/distinfo
@@ -0,0 +1,3 @@
+MD5 (Chemistry-File-MDLMol-0.21.tar.gz) = 60c3dc04da33282fa5234d5f59ae73bc
+SHA256 (Chemistry-File-MDLMol-0.21.tar.gz) = 5a57cb1c01bacfed1e54749d18d924c9331ec283da240845175fa41b65edd44c
+SIZE (Chemistry-File-MDLMol-0.21.tar.gz) = 14830
diff --git a/science/p5-Chemistry-File-MDLMol/pkg-descr b/science/p5-Chemistry-File-MDLMol/pkg-descr
new file mode 100644
index 000000000000..702f843dbd87
--- /dev/null
+++ b/science/p5-Chemistry-File-MDLMol/pkg-descr
@@ -0,0 +1,5 @@
+Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
+string, generating a Chemistry::Pattern object. It is a file I/O driver for
+the PerlMol toolkit.
+
+WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/
diff --git a/science/p5-Chemistry-File-MDLMol/pkg-plist b/science/p5-Chemistry-File-MDLMol/pkg-plist
new file mode 100644
index 000000000000..6a4e888825f6
--- /dev/null
+++ b/science/p5-Chemistry-File-MDLMol/pkg-plist
@@ -0,0 +1,6 @@
+%%SITE_PERL%%/mach/auto/Chemistry/File/MDLMol/.packlist
+%%SITE_PERL%%/Chemistry/File/MDLMol.pm
+%%SITE_PERL%%/Chemistry/File/SDF.pm
+@dirrmtry %%SITE_PERL%%/mach/auto/Chemistry/File/MDLMol
+@dirrmtry %%SITE_PERL%%/mach/auto/Chemistry/File
+@dirrmtry %%SITE_PERL%%/mach/auto/Chemistry
diff --git a/science/p5-Chemistry-File-SMARTS/Makefile b/science/p5-Chemistry-File-SMARTS/Makefile
new file mode 100644
index 000000000000..1f55e0e8f9f5
--- /dev/null
+++ b/science/p5-Chemistry-File-SMARTS/Makefile
@@ -0,0 +1,31 @@
+# New ports collection makefile for:	p5-Chemistry-File-SMARTS
+# Date created:		2010-03-10
+# Whom:			Steve Wills <steve@mouf.net>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	Chemistry-File-SMARTS
+PORTVERSION=	0.22
+CATEGORIES=	science perl5
+MASTER_SITES=	CPAN
+MASTER_SITE_SUBDIR=	../../authors/id/I/IT/ITUB
+PKGNAMEPREFIX=	p5-
+
+MAINTAINER=	steve@mouf.net
+COMMENT=	SMARTS chemical substructure pattern linear notation parser
+
+BUILD_DEPENDS=	${SITE_PERL}/Chemistry/Mol.pm:${PORTSDIR}/science/p5-Chemistry-Mol \
+		${SITE_PERL}/Chemistry/Ring/Find.pm:${PORTSDIR}/science/p5-Chemistry-Ring \
+		${SITE_PERL}/Chemistry/Pattern.pm:${PORTSDIR}/science/p5-Chemistry-Pattern \
+		${SITE_PERL}/Chemistry/File/SMILES.pm:${PORTSDIR}/science/p5-Chemistry-File-SMILES
+RUN_DEPENDS=	${SITE_PERL}/Chemistry/Mol.pm:${PORTSDIR}/science/p5-Chemistry-Mol \
+		${SITE_PERL}/Chemistry/Ring/Find.pm:${PORTSDIR}/science/p5-Chemistry-Ring \
+		${SITE_PERL}/Chemistry/Pattern.pm:${PORTSDIR}/science/p5-Chemistry-Pattern \
+		${SITE_PERL}/Chemistry/File/SMILES.pm:${PORTSDIR}/science/p5-Chemistry-File-SMILES
+
+MAN3=	Chemistry::File::SMARTS.3
+
+PERL_CONFIGURE=	yes
+
+.include <bsd.port.mk>
diff --git a/science/p5-Chemistry-File-SMARTS/distinfo b/science/p5-Chemistry-File-SMARTS/distinfo
new file mode 100644
index 000000000000..b241391c3520
--- /dev/null
+++ b/science/p5-Chemistry-File-SMARTS/distinfo
@@ -0,0 +1,3 @@
+MD5 (Chemistry-File-SMARTS-0.22.tar.gz) = 98156bf234d9da77faba3539e979066e
+SHA256 (Chemistry-File-SMARTS-0.22.tar.gz) = 9eced5f6f4c0d0cd335256b8e496e37b3eb99c3d21af114c1e6458083bc52c3f
+SIZE (Chemistry-File-SMARTS-0.22.tar.gz) = 8605
diff --git a/science/p5-Chemistry-File-SMARTS/pkg-descr b/science/p5-Chemistry-File-SMARTS/pkg-descr
new file mode 100644
index 000000000000..702f843dbd87
--- /dev/null
+++ b/science/p5-Chemistry-File-SMARTS/pkg-descr
@@ -0,0 +1,5 @@
+Perl module which will parse a SMARTS (SMiles ARbitrary Target Specification)
+string, generating a Chemistry::Pattern object. It is a file I/O driver for
+the PerlMol toolkit.
+
+WWW:	http://search.cpan.org/dist/Chemistry-File-SMARTS/
diff --git a/science/p5-Chemistry-File-SMARTS/pkg-plist b/science/p5-Chemistry-File-SMARTS/pkg-plist
new file mode 100644
index 000000000000..a756d714e155
--- /dev/null
+++ b/science/p5-Chemistry-File-SMARTS/pkg-plist
@@ -0,0 +1,4 @@
+%%SITE_PERL%%/mach/auto/Chemistry/File/SMARTS/.packlist
+%%SITE_PERL%%/Chemistry/File/SMARTS.pm
+@dirrmtry %%SITE_PERL%%/mach/auto/Chemistry/File/SMARTS
+@dirrmtry %%SITE_PERL%%/mach/auto/Chemistry/File