- update to 4.5.5

- drop FreeBSD 6.x support

3 files changed, 15 insertions, 9 deletions

diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 1494be563913..44cff1ea3f7d 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -6,8 +6,7 @@
 #
 
 PORTNAME=	gromacs
-PORTVERSION=	4.5.4
-PORTREVISION=	1
+PORTVERSION=	4.5.5
 CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.gromacs.org/pub/gromacs/
 
@@ -37,10 +36,6 @@ OPTIONS=	FFTW3	"Use FFT routines from math/fftw3"		on  \
 CONFIGURE_ARGS+=	--disable-ia32-sse
 .endif
 
-.if ${OSVERSION} < 700000
-CONFIGURE_ARGS+=	--disable-ia32-sse --disable-x86-64-sse
-.endif
-
 .if !defined(WITHOUT_FFTW3) && defined(WITH_FFTW2)
 IGNORE=		cannot build with FFTW3 and FFTW2. Run 'make config' again and choose only one of them
 .endif
@@ -126,6 +121,7 @@ MAN1=	do_dssp.1 \
 	g_current.1 \
 	g_density.1 \
 	g_densmap.1 \
+	g_densorder.1 \
 	g_dielectric.1 \
 	g_dih.1 \
 	g_dipoles.1 \
@@ -140,6 +136,7 @@ MAN1=	do_dssp.1 \
 	g_hbond.1 \
 	g_helix.1 \
 	g_helixorient.1 \
+	g_hydorder.1 \
 	g_lie.1 \
 	g_mdmat.1 \
 	g_membed.1 \
@@ -149,7 +146,9 @@ MAN1=	do_dssp.1 \
 	g_nmeig.1 \
 	g_nmens.1 \
 	g_nmtraj.1 \
+	g_options.1 \
 	g_order.1 \
+	g_pme_error.1 \
 	g_polystat.1 \
 	g_potential.1 \
 	g_principal.1 \
diff --git a/science/gromacs/distinfo b/science/gromacs/distinfo
index 9b9a381ea29a..a1aa910d3a04 100644
--- a/science/gromacs/distinfo
+++ b/science/gromacs/distinfo
@@ -1,2 +1,2 @@
-SHA256 (gromacs-4.5.4.tar.gz) = 301cc3d790f5036e230e02b1fb03c9b92e0db13df7ac6dbffb2a2fb03d7a1d1c
-SIZE (gromacs-4.5.4.tar.gz) = 10353984
+SHA256 (gromacs-4.5.5.tar.gz) = aae2ba114cfcb058cf5cae8df40252c07017b0edd30826759611206d54353554
+SIZE (gromacs-4.5.5.tar.gz) = 10399319
diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist
index 30dd6bc78da0..6d78a21ac208 100644
--- a/science/gromacs/pkg-plist
+++ b/science/gromacs/pkg-plist
@@ -24,11 +24,13 @@ bin/g_covar
 bin/g_current
 bin/g_density
 bin/g_densmap
+bin/g_densorder
 bin/g_dielectric
 bin/g_dih
 bin/g_dipoles
 bin/g_disre
 bin/g_dist
+bin/g_dos
 bin/g_dyndom
 bin/g_enemat
 bin/g_energy
@@ -38,6 +40,7 @@ bin/g_h2order
 bin/g_hbond
 bin/g_helix
 bin/g_helixorient
+bin/g_hydorder
 bin/g_kinetics
 bin/g_lie
 bin/g_luck
@@ -239,10 +242,10 @@ include/gromacs/thread_mpi/atomic/xlc_ppc.h
 include/gromacs/thread_mpi/barrier.h
 include/gromacs/thread_mpi/collective.h
 include/gromacs/thread_mpi/event.h
-include/gromacs/thread_mpi/hwinfo.h
 include/gromacs/thread_mpi/list.h
 include/gromacs/thread_mpi/lock.h
 include/gromacs/thread_mpi/mpi_bindings.h
+include/gromacs/thread_mpi/numa_malloc.h
 include/gromacs/thread_mpi/threads.h
 include/gromacs/thread_mpi/tmpi.h
 include/gromacs/thread_mpi/wait.h
@@ -264,15 +267,18 @@ include/gromacs/types/fcdata.h
 include/gromacs/types/filenm.h
 include/gromacs/types/forcerec.h
 include/gromacs/types/genborn.h
+include/gromacs/types/globsig.h
 include/gromacs/types/graph.h
 include/gromacs/types/group.h
 include/gromacs/types/idef.h
 include/gromacs/types/ifunc.h
 include/gromacs/types/inputrec.h
 include/gromacs/types/ishift.h
+include/gromacs/types/iteratedconstraints.h
 include/gromacs/types/matrix.h
 include/gromacs/types/mdatom.h
 include/gromacs/types/nblist.h
+include/gromacs/types/nlistheuristics.h
 include/gromacs/types/nrnb.h
 include/gromacs/types/ns.h
 include/gromacs/types/nsgrid.h
@@ -382,6 +388,7 @@ libdata/pkgconfig/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.pc
 %%DATADIR%%/html/online/g_covar.html
 %%DATADIR%%/html/online/g_density.html
 %%DATADIR%%/html/online/g_densmap.html
+%%DATADIR%%/html/online/g_densorder.html
 %%DATADIR%%/html/online/g_dielectric.html
 %%DATADIR%%/html/online/g_dih.html
 %%DATADIR%%/html/online/g_dipoles.html