- Update to 0.9.5

PR:		135263
Submitted by:	Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer)

3 files changed, 89 insertions, 12 deletions

diff --git a/science/avogadro/Makefile b/science/avogadro/Makefile
index 65b86547f955..3c669dc8aaf9 100644
--- a/science/avogadro/Makefile
+++ b/science/avogadro/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	avogadro
-PORTVERSION=	0.9.4
+PORTVERSION=	0.9.5
 CATEGORIES=	science
 MASTER_SITES=	SF
 
diff --git a/science/avogadro/distinfo b/science/avogadro/distinfo
index 5a3d94c9b61e..176a699f9f79 100644
--- a/science/avogadro/distinfo
+++ b/science/avogadro/distinfo
@@ -1,3 +1,3 @@
-MD5 (avogadro-0.9.4.tar.bz2) = 021809bd6498d167cd3bed51610572f2
-SHA256 (avogadro-0.9.4.tar.bz2) = 49025aa4e880930e31f9f86550e5d8da2aa2df11c5c555a55d4dc8e938a18778
-SIZE (avogadro-0.9.4.tar.bz2) = 4109405
+MD5 (avogadro-0.9.5.tar.bz2) = ff147ab06d75bfd48cd6fe0a6d7e523b
+SHA256 (avogadro-0.9.5.tar.bz2) = 8c6e811c9c904780c90291a70e0c3be31e2808e7340ac523c98c5711011cc01e
+SIZE (avogadro-0.9.5.tar.bz2) = 4712828
diff --git a/science/avogadro/pkg-plist b/science/avogadro/pkg-plist
index 1c88458ebba9..262afb5808d1 100644
--- a/science/avogadro/pkg-plist
+++ b/science/avogadro/pkg-plist
@@ -12,15 +12,17 @@ include/avogadro/extension.h
 include/avogadro/filetreeitem.h
 include/avogadro/fragment.h
 include/avogadro/glgraphicsview.h
+include/avogadro/glhit.h
 include/avogadro/global.h
 include/avogadro/glwidget.h
 include/avogadro/idlist.h
-include/avogadro/line.h
 include/avogadro/mesh.h
 include/avogadro/meshgenerator.h
 include/avogadro/molecule.h
+include/avogadro/moleculefile.h
 include/avogadro/navigate.h
 include/avogadro/neighborlist.h
+include/avogadro/openbabelwrapper.h
 include/avogadro/painter.h
 include/avogadro/painterdevice.h
 include/avogadro/periodictableview.h
@@ -30,9 +32,7 @@ include/avogadro/plotpoint.h
 include/avogadro/plotwidget.h
 include/avogadro/plugin.h
 include/avogadro/pluginmanager.h
-include/avogadro/point.h
 include/avogadro/primitive.h
-include/avogadro/primitiveitemmodel.h
 include/avogadro/primitivelist.h
 include/avogadro/protein.h
 include/avogadro/pythonerror.h
@@ -45,13 +45,15 @@ include/avogadro/undosequence.h
 include/avogadro/zmatrix.h
 lib/avogadro/AvogadroBuildSettings.cmake
 lib/avogadro/AvogadroConfig.cmake
+lib/avogadro/AvogadroConfigVersion.cmake
 lib/avogadro/AvogadroLibraryDeps.cmake
 lib/avogadro/AvogadroUse.cmake
 lib/avogadro/cmake/FindEigen2.cmake
 lib/avogadro/cmake/FindGLEW.cmake
+lib/avogadro/colors/atomindexcolor.so
 lib/avogadro/colors/chargecolor.so
+lib/avogadro/colors/customcolor.so
 lib/avogadro/colors/distancecolor.so
-lib/avogadro/colors/indexcolor.so
 lib/avogadro/colors/residuecolor.so
 lib/avogadro/engines/axesengine.so
 lib/avogadro/engines/cartoonengine.so
@@ -76,6 +78,9 @@ lib/avogadro/extensions/gamessextension.so
 lib/avogadro/extensions/gaussianextension.so
 lib/avogadro/extensions/h2methylextension.so
 lib/avogadro/extensions/hydrogenextension.so
+lib/avogadro/extensions/insertfragmentextension.so
+lib/avogadro/extensions/insertpeptideextension.so
+lib/avogadro/extensions/molecularpropextension.so
 lib/avogadro/extensions/networkfetchextension.so
 lib/avogadro/extensions/orbitalextension.so
 lib/avogadro/extensions/povrayextension.so
@@ -97,8 +102,50 @@ lib/avogadro/tools/navigatetool.so
 lib/avogadro/tools/selectrotatetool.so
 lib/libavogadro.so
 lib/libavogadro.so.0
-lib/libavogadro.so.0.9.4
-%%PYTHON_SITELIBDIR%%/Avogadro.so
+lib/libavogadro.so.0.9.5
+%%PYTHON_SITELIBDIR%%/_Avogadro.so
+%%PYTHON_SITELIBDIR%%/Avogadro.py
+%%DATADIR%%/builder/amino/d-ala.zmat
+%%DATADIR%%/builder/amino/d-arg.zmat
+%%DATADIR%%/builder/amino/d-asn.zmat
+%%DATADIR%%/builder/amino/d-asp.zmat
+%%DATADIR%%/builder/amino/d-cys.zmat
+%%DATADIR%%/builder/amino/d-gln.zmat
+%%DATADIR%%/builder/amino/d-glu.zmat
+%%DATADIR%%/builder/amino/d-his.zmat
+%%DATADIR%%/builder/amino/d-ile.zmat
+%%DATADIR%%/builder/amino/d-leu.zmat
+%%DATADIR%%/builder/amino/d-lys.zmat
+%%DATADIR%%/builder/amino/d-met.zmat
+%%DATADIR%%/builder/amino/d-phe.zmat
+%%DATADIR%%/builder/amino/d-pro.zmat
+%%DATADIR%%/builder/amino/d-ser.zmat
+%%DATADIR%%/builder/amino/d-thr.zmat
+%%DATADIR%%/builder/amino/d-trp.zmat
+%%DATADIR%%/builder/amino/d-tyr.zmat
+%%DATADIR%%/builder/amino/d-val.zmat
+%%DATADIR%%/builder/amino/gly.zmat
+%%DATADIR%%/builder/amino/l-ala.zmat
+%%DATADIR%%/builder/amino/l-arg.zmat
+%%DATADIR%%/builder/amino/l-asn.zmat
+%%DATADIR%%/builder/amino/l-asp.zmat
+%%DATADIR%%/builder/amino/l-cys.zmat
+%%DATADIR%%/builder/amino/l-gln.zmat
+%%DATADIR%%/builder/amino/l-glu.zmat
+%%DATADIR%%/builder/amino/l-his.zmat
+%%DATADIR%%/builder/amino/l-ile.zmat
+%%DATADIR%%/builder/amino/l-leu.zmat
+%%DATADIR%%/builder/amino/l-lys.zmat
+%%DATADIR%%/builder/amino/l-met.zmat
+%%DATADIR%%/builder/amino/l-phe.zmat
+%%DATADIR%%/builder/amino/l-pro.zmat
+%%DATADIR%%/builder/amino/l-pyl.zmat
+%%DATADIR%%/builder/amino/l-sec.zmat
+%%DATADIR%%/builder/amino/l-ser.zmat
+%%DATADIR%%/builder/amino/l-thr.zmat
+%%DATADIR%%/builder/amino/l-trp.zmat
+%%DATADIR%%/builder/amino/l-tyr.zmat
+%%DATADIR%%/builder/amino/l-val.zmat
 %%DATADIR%%/fragments/alcohols/ethanol.cml
 %%DATADIR%%/fragments/alcohols/methanol.cml
 %%DATADIR%%/fragments/alcohols/propan-1-ol.cml
@@ -279,13 +326,16 @@ lib/libavogadro.so.0.9.4
 %%DATADIR%%/fragments/thiols/pentane-1-thiol.cml
 %%DATADIR%%/fragments/water.cml
 %%DATADIR%%/i18n/avogadro_ar.qm
+%%DATADIR%%/i18n/avogadro_bg.qm
 %%DATADIR%%/i18n/avogadro_ca.qm
 %%DATADIR%%/i18n/avogadro_cs.qm
 %%DATADIR%%/i18n/avogadro_de.qm
+%%DATADIR%%/i18n/avogadro_en_CA.qm
 %%DATADIR%%/i18n/avogadro_en_GB.qm
 %%DATADIR%%/i18n/avogadro_es.qm
 %%DATADIR%%/i18n/avogadro_fi.qm
 %%DATADIR%%/i18n/avogadro_fr.qm
+%%DATADIR%%/i18n/avogadro_id.qm
 %%DATADIR%%/i18n/avogadro_it.qm
 %%DATADIR%%/i18n/avogadro_ja.qm
 %%DATADIR%%/i18n/avogadro_ko.qm
@@ -295,15 +345,40 @@ lib/libavogadro.so.0.9.4
 %%DATADIR%%/i18n/avogadro_pt.qm
 %%DATADIR%%/i18n/avogadro_pt_BR.qm
 %%DATADIR%%/i18n/avogadro_ru.qm
+%%DATADIR%%/i18n/avogadro_sk.qm
 %%DATADIR%%/i18n/avogadro_sv.qm
 %%DATADIR%%/i18n/avogadro_tr.qm
 %%DATADIR%%/i18n/avogadro_uk.qm
 %%DATADIR%%/i18n/avogadro_zh_CN.qm
 %%DATADIR%%/i18n/avogadro_zh_TW.qm
+%%DATADIR%%/i18n/libavogadro_ar.qm
+%%DATADIR%%/i18n/libavogadro_bg.qm
+%%DATADIR%%/i18n/libavogadro_ca.qm
+%%DATADIR%%/i18n/libavogadro_cs.qm
+%%DATADIR%%/i18n/libavogadro_de.qm
+%%DATADIR%%/i18n/libavogadro_en_CA.qm
+%%DATADIR%%/i18n/libavogadro_en_GB.qm
+%%DATADIR%%/i18n/libavogadro_es.qm
+%%DATADIR%%/i18n/libavogadro_fi.qm
+%%DATADIR%%/i18n/libavogadro_fr.qm
+%%DATADIR%%/i18n/libavogadro_id.qm
+%%DATADIR%%/i18n/libavogadro_it.qm
+%%DATADIR%%/i18n/libavogadro_ja.qm
+%%DATADIR%%/i18n/libavogadro_ko.qm
+%%DATADIR%%/i18n/libavogadro_nb.qm
+%%DATADIR%%/i18n/libavogadro_nl.qm
+%%DATADIR%%/i18n/libavogadro_pl.qm
+%%DATADIR%%/i18n/libavogadro_pt.qm
+%%DATADIR%%/i18n/libavogadro_pt_BR.qm
+%%DATADIR%%/i18n/libavogadro_ru.qm
+%%DATADIR%%/i18n/libavogadro_sk.qm
+%%DATADIR%%/i18n/libavogadro_sv.qm
+%%DATADIR%%/i18n/libavogadro_tr.qm
+%%DATADIR%%/i18n/libavogadro_uk.qm
+%%DATADIR%%/i18n/libavogadro_zh_CN.qm
+%%DATADIR%%/i18n/libavogadro_zh_TW.qm
 share/libavogadro/engineScripts/wireframe.py
 share/libavogadro/extensionScripts/example.py
-share/libavogadro/toolScripts/template.py
-@dirrm share/libavogadro/toolScripts
 @dirrm share/libavogadro/extensionScripts
 @dirrm share/libavogadro/engineScripts
 @dirrm share/libavogadro
@@ -332,6 +407,8 @@ share/libavogadro/toolScripts/template.py
 @dirrm %%DATADIR%%/fragments/aldehydes
 @dirrm %%DATADIR%%/fragments/alcohols
 @dirrm %%DATADIR%%/fragments
+@dirrm %%DATADIR%%/builder/amino
+@dirrm %%DATADIR%%/builder
 @dirrm %%DATADIR%%
 @dirrm lib/avogadro/tools
 @dirrm lib/avogadro/extensions