PyNN(pronounced 'pine') is a simulator-independent language for

building neuronal network models.

WWW: http://neuralensemble.org/trac/PyNN

4 files changed, 170 insertions, 0 deletions

diff --git a/science/pynn/Makefile b/science/pynn/Makefile
new file mode 100644
index 000000000000..dc17e972efcc
--- /dev/null
+++ b/science/pynn/Makefile
@@ -0,0 +1,25 @@
+# New ports collection makefile for: pynn
+# Date created:			12 May 2010
+# Whom:				Ju Pengfei <jupengfei@gmail.com>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	pynn
+PORTVERSION=	0.6.0
+CATEGORIES=	science python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+DISTNAME=	PyNN-${PORTVERSION}
+
+MAINTAINER=	jupengfei@gmail.com
+COMMENT=	A simulator-independent language for building neuronal network models
+
+BUILD_DEPENDS=	${PYNUMPY}
+RUN_DEPENDS=	${BUILD_DEPENDS}
+
+USE_PYTHON=		yes
+USE_PYDISTUTILS=	yes
+PYDISTUTILS_PKGNAME=	PyNN
+
+.include <bsd.port.mk>
diff --git a/science/pynn/distinfo b/science/pynn/distinfo
new file mode 100644
index 000000000000..5779ea9ff5fb
--- /dev/null
+++ b/science/pynn/distinfo
@@ -0,0 +1,3 @@
+MD5 (PyNN-0.6.0.tar.gz) = 00b124abc21afad6d2eaf455976fc2e5
+SHA256 (PyNN-0.6.0.tar.gz) = a1367e64b1cd83ac3eae7ee696a1d48e64656f62121e081e3d8449c21e18fbe8
+SIZE (PyNN-0.6.0.tar.gz) = 191346
diff --git a/science/pynn/pkg-descr b/science/pynn/pkg-descr
new file mode 100644
index 000000000000..5b2bb34e5179
--- /dev/null
+++ b/science/pynn/pkg-descr
@@ -0,0 +1,4 @@
+PyNN(pronounced 'pine') is a simulator-independent language for
+building neuronal network models. 
+
+WWW: http://neuralensemble.org/trac/PyNN
diff --git a/science/pynn/pkg-plist b/science/pynn/pkg-plist
new file mode 100644
index 000000000000..40b24dffa252
--- /dev/null
+++ b/science/pynn/pkg-plist
@@ -0,0 +1,138 @@
+%%PYTHON_SITELIBDIR%%/pyNN/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/connectors.py
+%%PYTHON_SITELIBDIR%%/pyNN/common.py
+%%PYTHON_SITELIBDIR%%/pyNN/utility.py
+%%PYTHON_SITELIBDIR%%/pyNN/cells.py
+%%PYTHON_SITELIBDIR%%/pyNN/random.py
+%%PYTHON_SITELIBDIR%%/pyNN/synapses.py
+%%PYTHON_SITELIBDIR%%/pyNN/multisim.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.py
+%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/nest/recording.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/connectors.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/simulator.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/cells.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/synapses.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/nest/electrodes.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/cells.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/synapses.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.py
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/cells.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/synapses.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/recording.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/simulator.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/cells.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/synapses.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/connectors_old.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/pcsim/electrodes.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/synapses.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.py
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/synapses.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/recording.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/connectors.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/simulator.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/cells.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/synapses.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/neuron/electrodes.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/cells.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/synapses.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.py
+%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/cells.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/synapses.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/brian/recording.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/connectors.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/simulator.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/cells.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/synapses.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/brian/electrodes.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/recording/files.py
+%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.py
+%%PYTHON_SITELIBDIR%%/pyNN/recording/files.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/recording/files.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/recording/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/stdwa_songabbott.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/reset.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/stdwa_softlimits.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/stdwa_guetig.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/hh_traub.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/vecstim.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/refrac.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/alphasyn.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/adexp.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/netstim2.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/stdwa_symm.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/alphaisyn.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/expisyn.mod
+%%PYTHON_SITELIBDIR%%/pyNN/hoc/tmgsyn.mod
+%%PYTHON_SITELIBDIR%%/pyNN/__init__.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/connectors.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/common.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/utility.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/cells.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/random.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/synapses.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/multisim.pyc
+%%PYTHON_SITELIBDIR%%/pyNN/__init__.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/connectors.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/common.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/utility.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/cells.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/random.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/synapses.pyo
+%%PYTHON_SITELIBDIR%%/pyNN/multisim.pyo
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/nest
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/pcsim
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/neuron
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/brian
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/recording
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN/hoc
+@dirrm %%PYTHON_SITELIBDIR%%/pyNN