Re-added port: science/py-pymol: OpenGL based molecular visualization system (existed 2002/08/13-2014/09/01, deleted in r366862)

Approved by:	adamw (mentor)
Differential Revision:	https://reviews.freebsd.org/D12902

1 files changed, 22 insertions, 0 deletions

diff --git a/science/py-pymol/files/patch-setup.py b/science/py-pymol/files/patch-setup.py
new file mode 100644
index 000000000000..9c43d171c4cb
--- /dev/null
+++ b/science/py-pymol/files/patch-setup.py
@@ -0,0 +1,22 @@
+--- setup.py.orig	2017-03-09 18:16:07 UTC
++++ setup.py
+@@ -52,6 +52,8 @@ try:
+             "keyword support.")
+     parser.add_argument('--help-distutils', action="store_true",
+             help="show help for distutils options and exit")
++    parser.add_argument('--single-version-externally-managed', action="store_true",
++            help="single-version-externally-managed")
+     options, sys.argv[1:] = parser.parse_known_args(namespace=options)
+ except ImportError:
+     print("argparse not available")
+@@ -318,8 +320,8 @@ else: # unix style (linux, mac, ...)
+ 
+     # optimization currently causes a clang segfault on OS X 10.9 when
+     # compiling layer2/RepCylBond.cpp
+-    if sys.platform != 'darwin':
+-        ext_comp_args += ["-O3"]
++    #if sys.platform != 'darwin':
++    #    ext_comp_args += ["-O3"]
+ 
+ def get_pymol_version():
+     return re.findall(r'_PyMOL_VERSION "(.*)"', open('layer0/Version.h').read())[0]