py-DendroPy is a python library for phylogenetic scripting,

simulation, data processing and manipulation.

WWW:    http://packages.python.org/DendroPy/

5 files changed, 359 insertions, 0 deletions

diff --git a/science/py-DendroPy/Makefile b/science/py-DendroPy/Makefile
new file mode 100644
index 000000000000..1e135426a9f1
--- /dev/null
+++ b/science/py-DendroPy/Makefile
@@ -0,0 +1,20 @@
+# New ports collection makefile for:	py-DendroPy
+# Date created:		09 Jan, 2010
+# Whom:			Wen Heping <wenheping@gmail.com>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	DendroPy
+PORTVERSION=	3.0.2
+CATEGORIES=	science python
+MASTER_SITES=	CHEESESHOP
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	wen@FreeBSD.org
+COMMENT=	Phylogenetic computing library
+
+USE_PYTHON=	yes
+USE_PYDISTUTILS=	easy_install
+
+.include <bsd.port.mk>
diff --git a/science/py-DendroPy/distinfo b/science/py-DendroPy/distinfo
new file mode 100644
index 000000000000..18f87fab87eb
--- /dev/null
+++ b/science/py-DendroPy/distinfo
@@ -0,0 +1,3 @@
+MD5 (DendroPy-3.0.2.tar.gz) = d1e44937e5171fe864864f6cb8e629c1
+SHA256 (DendroPy-3.0.2.tar.gz) = 99304b4611f38da96370ca6470847e20a0ff01f78320438a872fdcebdb41f621
+SIZE (DendroPy-3.0.2.tar.gz) = 2233110
diff --git a/science/py-DendroPy/files/patch-setup.py b/science/py-DendroPy/files/patch-setup.py
new file mode 100644
index 000000000000..455b04d52f80
--- /dev/null
+++ b/science/py-DendroPy/files/patch-setup.py
@@ -0,0 +1,15 @@
+--- setup.py.orig	2010-01-09 13:22:53.000000000 +0800
++++ setup.py	2010-01-09 13:23:15.000000000 +0800
+@@ -28,9 +28,9 @@
+ import os
+ 
+ try:
+-    import ez_setup
+-    sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__))
+-    ez_setup.use_setuptools()
++#    import ez_setup
++#    sys.stderr.write("using ez_setup ('%s')\n" % os.path.abspath(ez_setup.__file__))
++#    ez_setup.use_setuptools()
+     import setuptools
+     sys.stderr.write("using setuptools ('%s')\n" % os.path.abspath(setuptools.__file__))
+     from setuptools import setup, find_packages
diff --git a/science/py-DendroPy/pkg-descr b/science/py-DendroPy/pkg-descr
new file mode 100644
index 000000000000..5abea6fe958c
--- /dev/null
+++ b/science/py-DendroPy/pkg-descr
@@ -0,0 +1,4 @@
+py-DendroPy is a python library for phylogenetic scripting,
+simulation, data processing and manipulation.
+
+WWW:	http://packages.python.org/DendroPy/
diff --git a/science/py-DendroPy/pkg-plist b/science/py-DendroPy/pkg-plist
new file mode 100644
index 000000000000..d36cf1d5b021
--- /dev/null
+++ b/science/py-DendroPy/pkg-plist
@@ -0,0 +1,317 @@
+bin/cattrees.py
+bin/long_branch_symmdiff.py
+bin/strict_consensus_merge.py
+bin/sumtrees.py
+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO
+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/SOURCES.txt
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+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/requires.txt
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+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/long_branch_symmdiff.py
+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/strict_consensus_merge.py
+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/scripts/sumtrees.py
+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/top_level.txt
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