- Fix plugins

- Update to 2006.06.30.1332

PR:		ports/103318
Submitted by:	Jason Bacon <bacon@smithers.neuro.mcw.edu> (maintainer)

7 files changed, 263 insertions, 140 deletions

diff --git a/science/afni/Makefile b/science/afni/Makefile
index 7c3c29b56fc7..dc3aa6e7d92d 100644
--- a/science/afni/Makefile
+++ b/science/afni/Makefile
@@ -16,14 +16,14 @@
 # Makefile.BSD, which is included in the source distribution.
 
 PORTNAME=	afni
-PORTVERSION=	2006.03.21.1314
+PORTVERSION=	2006.06.30.1332
 CATEGORIES=	science biology graphics
-MASTER_SITES=	http://afni.nimh.nih.gov/pub/dist/tgz/ \
-		http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/
-DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 Makefile.FreeBSD_PORT \
-		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3b-Mar1506.tgz
+MASTER_SITES=	http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
+		http://afni.nimh.nih.gov/pub/dist/tgz/
+DISTFILES=	afni_src.tgz afni_doc.tgz afni.1 \
+		TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3c-May0806.tgz
 DIST_SUBDIR=	AFNI-${PORTVERSION}
-EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3b-Mar1506.tgz
+EXTRACT_ONLY=	afni_src.tgz afni_doc.tgz CA_EZ_v1.3c-May0806.tgz
 
 MAINTAINER=	bacon@smithers.neuro.mcw.edu
 COMMENT=	Advanced Functional Neuro Imaging
@@ -36,7 +36,7 @@ RUN_DEPENDS=	cjpeg:${PORTSDIR}/graphics/jpeg \
 .include <bsd.port.pre.mk>
 
 .if ${ARCH} == "sparc64"
-BROKEN=	Does not compile on sparc64: "undefined reference to '_mcount'"
+BROKEN=	Does not compile on sparc64: "undefined reference to `_mcount'"
 .endif
 
 USE_GETTEXT=	yes
@@ -49,8 +49,6 @@ WRKSRC=		${WRKDIR}/afni_src
 MAKEFILE=	Makefile.FreeBSD_PORT
 ALL_TARGET=	vastness suma
 
-SUB_FILES=	pkg-message
-
 ###########################################################################
 # Install parameters
 
@@ -66,6 +64,7 @@ SCRIPTS=\
 	@Center_Distance \
 	@CheckForAfniDset \
 	@CommandGlobb \
+	@DoPerRoi.py \
 	@DTI_studio_reposition \
 	@FromRAI \
 	@GetAfniOrient \
@@ -76,6 +75,7 @@ SCRIPTS=\
 	@Purify_1D \
 	@RenamePanga \
 	@SUMA_AlignToExperiment \
+	@SUMA_Make_Spec_Caret \
 	@SUMA_Make_Spec_FS \
 	@SUMA_Make_Spec_SF \
 	@ToRAI \
@@ -90,6 +90,7 @@ SCRIPTS=\
 	@np \
 	@parse_afni_name \
 	@parse_name \
+	afni_base.py \
 	3dMax \
 	suma_change_spec
 
@@ -99,15 +100,18 @@ INSTALL_WRKSRC=	${WRKSRC}/BSD
 INSTALL_TEMP=	${WRKSRC}/Backup.BSD
 
 post-extract:
-	${CP} -f ${DISTDIR}/${DIST_SUBDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
+	${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}
+	${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
+	${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKDIR}/afni.1
 
 do-install:
-	${MKDIR} ${DATADIR} ${INSTALL_TEMP}
+	${MKDIR} ${DATADIR} ${INSTALL_TEMP} \
+		${PREFIX}/lib/afni ${PREFIX}/include/afni
 	@${MV} ${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP}
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \
-		${PREFIX}/lib
+		${PREFIX}/lib/afni
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h \
-		${PREFIX}/include
+		${PREFIX}/include/afni
 	${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \
 		${DATADIR}
 	@${MV}	${INSTALL_WRKSRC}/*.so \
@@ -126,8 +130,8 @@ do-install:
 .endfor
 	${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin
 	${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR}
-	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3b-Mar1506/* ${DATADIR}
-	${INSTALL_MAN} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${PREFIX}/man/man1
+	${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3c-May0806/* ${DATADIR}
+	${INSTALL_MAN} ${WRKDIR}/afni.1 ${PREFIX}/man/man1
 	@${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC}
 .if !defined(NOPORTDOCS)
 	${MKDIR} ${DOCSDIR}
@@ -135,6 +139,6 @@ do-install:
 .endif
 
 post-install:
-	@${CAT} ${WRKDIR}/pkg-message
+	@${CAT} pkg-message
 
 .include <bsd.port.post.mk>
diff --git a/science/afni/distinfo b/science/afni/distinfo
index 807177e6d30a..fb45bf4472eb 100644
--- a/science/afni/distinfo
+++ b/science/afni/distinfo
@@ -1,21 +1,18 @@
-MD5 (AFNI-2006.03.21.1314/afni_src.tgz) = 4b66b4951788c36b137d46dc3dcac4bb
-SHA256 (AFNI-2006.03.21.1314/afni_src.tgz) = 688140a767196086a6db522f1b88f2b8d19cf72648ef689a5f74dc4c3975b610
-SIZE (AFNI-2006.03.21.1314/afni_src.tgz) = 10856284
-MD5 (AFNI-2006.03.21.1314/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
-SHA256 (AFNI-2006.03.21.1314/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
-SIZE (AFNI-2006.03.21.1314/afni_doc.tgz) = 3267095
-MD5 (AFNI-2006.03.21.1314/afni.1) = 39c9a1a39b207cd957f0f0d5ec220e4e
-SHA256 (AFNI-2006.03.21.1314/afni.1) = f14991934a8b78f2497cd1d0f48b849c1a6debef01c666eafd70993ba63c99da
-SIZE (AFNI-2006.03.21.1314/afni.1) = 1103
-MD5 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 77fd9306b8e5c73c555edcf04aeaf562
-SHA256 (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = f29118dbe49cc95de62a6b3ca2b31cfae0017247854d764dc5e0069ed58f589b
-SIZE (AFNI-2006.03.21.1314/Makefile.FreeBSD_PORT) = 3101
-MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
-SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
-SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.BRIK.gz) = 159912
-MD5 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
-SHA256 (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
-SIZE (AFNI-2006.03.21.1314/TTatlas+tlrc.HEAD) = 1750
-MD5 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = a66e4abb3385878a945351e761d12723
-SHA256 (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = c9e884370a1580b1101c01f44cc76f81fc0fd64af7796b76762091ee9de4feed
-SIZE (AFNI-2006.03.21.1314/CA_EZ_v1.3b-Mar1506.tgz) = 2645818
+MD5 (AFNI-2006.06.30.1332/afni_src.tgz) = 3b496d379b62c57e2d27a1554da5cf29
+SHA256 (AFNI-2006.06.30.1332/afni_src.tgz) = f249e0b8f89a9bae4751d10785acc9e9b71ae179b42853a6c2b1977a9c363c98
+SIZE (AFNI-2006.06.30.1332/afni_src.tgz) = 11178437
+MD5 (AFNI-2006.06.30.1332/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38
+SHA256 (AFNI-2006.06.30.1332/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1
+SIZE (AFNI-2006.06.30.1332/afni_doc.tgz) = 3267095
+MD5 (AFNI-2006.06.30.1332/afni.1) = 7678276880116dcab3324dbf43d0ebf6
+SHA256 (AFNI-2006.06.30.1332/afni.1) = 5598ef2f409797c463bc90d0db44c283357dde9fdaebb943ded70ac8c0aa11c3
+SIZE (AFNI-2006.06.30.1332/afni.1) = 1702
+MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee
+SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd
+SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 159912
+MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5
+SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919
+SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 1750
+MD5 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150
+SHA256 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31
+SIZE (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = 2652278
diff --git a/science/afni/files/Makefile.FreeBSD_PORT b/science/afni/files/Makefile.FreeBSD_PORT
new file mode 100644
index 000000000000..5adfa49092b5
--- /dev/null
+++ b/science/afni/files/Makefile.FreeBSD_PORT
@@ -0,0 +1,108 @@
+##################################################################
+#
+# This Makefile is tested with FreeBSD 5.x
+#
+# Contributed by: 
+#   Jason W. Bacon
+#   Medical College of Wisconsin
+#   bacon@smithers.neuro.mcw.edu
+#
+# Before compiling afni, install the following packages:
+#
+#   open-motif
+# 
+# To compile SUMA you will also need the following packages:
+#
+#   libiconv
+#   gettext
+#   gmake
+#
+#   Note:   SUMA has display problems on FreeBSD 4.8 and below that I 
+#           have not found time to resolve.  I believe they are related
+#           to the version of the GL libraries that ship with 4.x.
+#
+#           SUMA works fine under FreeBSD 4.9 with GeForce drivers installed
+#           and under FreeBSD 5.1.
+#
+#   Note:   The SUMA build process (as of Aug, 2003) requires GNU make,
+#           which is /usr/local/bin/gmake on BSD systems.  
+#           Be sure the MAKE macro below is set to gmake.
+#
+#   Note:   Compilation of netcdf-3.5.0 may fail due to m4's lack of
+#           support for the -B option.  Remove the -B10000 flag from
+#           netcdf-3.5.0/src/configure BEFORE running make to avoid
+#           this error.  ( Or force configure to use gm4 by reversing
+#           the order of "m4 gm4" to "gm4 m4" everywhere in the script }
+#           This problem has been reported to the netcdf development team.
+#           It seems to have been resolved as of the June, 2003 afni
+#           source distribution.
+#
+
+USE_ZLIB = -DHAVE_ZLIB
+LZLIB    = -lz
+
+CC?     = cc
+LD?     = ${CC}
+
+CCDEBS = -DAFNI_DEBUG -DIMSEQ_DEBUG -DDISPLAY_DEBUG -DTHD_DEBUG
+CEXTRA = -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE
+ifeq (${ARCH}, amd64)
+CEXTRA += -DPIC -fPIC
+endif
+ifeq (${ARCH}, ia64)
+CEXTRA += -DPIC -fPIC
+endif
+
+CFLAGS += ${CEXTRA}
+CC     += ${CFLAGS}
+
+CCVOL  = ${CC}
+CCFAST = ${CC} -O3
+CCMIN  = ${CC}
+CCD    = ${CC} ${CCDEBS}
+CCSVD  = ${CC} -O0
+
+IFLAGS = -I. -I/usr/X11R6/include -I/usr/local/include
+LFLAGS = -s -L. -L/usr/X11R6/lib
+
+MAKE   = gmake
+
+PLUGIN_SUFFIX = so
+PLUGIN_LFLAGS = -shared
+PLUGIN_CC     = ${CC}
+PLFLAGS       = -s -rdynamic -L. -L/usr/X11R6/lib
+
+AR     = /usr/bin/ar
+RANLIB = /usr/bin/ranlib
+TAR    = /usr/bin/tar
+MKDIR  = /bin/mkdir
+TAPE   = /dev/sa0
+GZIP   = /bin/gzip
+
+RM = /bin/rm -f
+MV = /bin/mv -f
+CP = /bin/cp -f
+
+LINT = /usr/bin/lint -a -b -u -v -x ${IFLAGS} ${CCDEFS}
+
+INSTALLDIR = ./BSD
+LIBDIR = ${INSTALLDIR}
+
+# for dynamic linking
+
+LLIBS  = -lmri -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm $(LZLIB)
+
+# vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv
+# For suma (NO STATIC LINKING OF GL libs)
+SUMA_INCLUDE_PATH = -I/usr/X11R6/include -I/usr/local/include -I./ -I../ -I../niml/ -Igts/src 
+SUMA_LINK_PATH = -L/usr/lib -L/usr/X11R6/lib -L../
+#use -lGLw if you have libGLw.a or libGLw.so* or 
+#  -lMesaGLw if you have Mesa's version (libMesaGLw*) of libGLw
+SUMA_LINK_LIB = -lXm -lGLw -lGLU -lGL -lXmu -lXp -lXt -lXext -lX11 -lm $(LZLIB)
+SUMA_MAKEFILE_NAME = SUMA_Makefile
+SUMA_BIN_ARCHIVE = SUMA_FreeBSD.tar
+# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+###############################################################
+
+include Makefile.INCLUDE
diff --git a/science/afni/files/pkg-message.in b/science/afni/files/pkg-message.in
deleted file mode 100644
index 8c3b327015e3..000000000000
--- a/science/afni/files/pkg-message.in
+++ /dev/null
@@ -1,7 +0,0 @@
-=============================================================================
-
-The environment variable AFNI_PLUGIN_PATH must contain
-%%PREFIX%%/lib:%%PREFIX%%/share/afni
-in order to run AFNI plugins and view splash images.
-
-=============================================================================
diff --git a/science/afni/pkg-descr b/science/afni/pkg-descr
index 537fa54dae7b..ca24c2d15b26 100644
--- a/science/afni/pkg-descr
+++ b/science/afni/pkg-descr
@@ -1,4 +1,4 @@
-This is a port of AFNI, Advanced Functional Neuro Imaging.  AFNI is
+This is a port of AFNI, Analysis of Functional Neuro Imaging.  AFNI is
 a tool for analyzing 3 dimensional images, especially functional MRI
 images used in brain mapping research.
 
diff --git a/science/afni/pkg-message b/science/afni/pkg-message
new file mode 100644
index 000000000000..cf13bd7595a7
--- /dev/null
+++ b/science/afni/pkg-message
@@ -0,0 +1,12 @@
+=============================================================================
+Run "man afni" for information on setting up your afni environment.
+
+For questions or comments regarding the FreeBSD port, please contact the
+port maintainer: 
+
+bacon@smithers.neuro.mcw.edu
+
+For AFNI configuration and usage, please visit the AFNI WEB site at 
+
+http://afni.nimh.nih.gov.
+=============================================================================
diff --git a/science/afni/pkg-plist b/science/afni/pkg-plist
index 66a50306c100..3a88539e9f78 100644
--- a/science/afni/pkg-plist
+++ b/science/afni/pkg-plist
@@ -125,6 +125,7 @@ bin/3dttest
 bin/3dvolreg
 bin/4swap
 bin/AlphaSim
+bin/AnalyzeTrace
 bin/CompareSurfaces
 bin/ConvertDset
 bin/ConvertSurface
@@ -148,6 +149,7 @@ bin/SUMA_pixmap2eps
 bin/SampBias
 bin/ScaleToMap
 bin/SurfClust
+bin/SurfDsetInfo
 bin/SurfMeasures
 bin/SurfPatch
 bin/SurfQual
@@ -195,7 +197,6 @@ bin/mritopgm
 bin/myget
 bin/nicat
 bin/nifti1_test
-bin/nifti_stats
 bin/nifti_tool
 bin/nsize
 bin/p2t
@@ -218,100 +219,101 @@ bin/tfim
 bin/to3d
 bin/waver
 bin/whereami
-include/3ddata.h
-include/afni_environ.h
-include/afni_warp.h
-include/cdflib.h
-include/coxplot.h
-include/cs.h
-include/cs_sort_template.h
-include/editvol.h
-include/eispack.h
-include/f2c.h
-include/killer.h
-include/machdep.h
-include/mcw_glob.h
-include/mcw_malloc.h
-include/mrilib.h
-include/multivector.h
-include/niml.h
-include/tagset.h
-include/thd_compress.h
-include/thd_iochan.h
-include/thd_maker.h
-include/vecmat.h
-include/vol2surf.h
-include/volpack.h
-lib/libSUMA.a
-lib/libcoxplot.a
-lib/libmri.a
-lib/libmrix.a
-lib/libvolpack.a
-lib/model_beta.so
-lib/model_constant.so
-lib/model_convgamma.so
-lib/model_convgamma2a.so
-lib/model_diffexp.so
-lib/model_diffusion.so
-lib/model_gammavar.so
-lib/model_linear.so
-lib/model_michaelis_menton.so
-lib/model_null.so
-lib/model_quadratic.so
-lib/model_sinewave_ap.so
-lib/model_sinewave_apf.so
-lib/model_squarewave_ap.so
-lib/model_squarewave_apf.so
-lib/model_trnglwave_ap.so
-lib/model_trnglwave_apf.so
-lib/plug_3Ddump_V2.so
-lib/plug_3ddot.so
-lib/plug_3ddup.so
-lib/plug_4Ddump.so
-lib/plug_L1fit.so
-lib/plug_betafit.so
-lib/plug_clust.so
-lib/plug_compress.so
-lib/plug_coorder.so
-lib/plug_copy.so
-lib/plug_crender.so
-lib/plug_deconvolve.so
-lib/plug_delay_V2.so
-lib/plug_drawdset.so
-lib/plug_edit.so
-lib/plug_extract.so
-lib/plug_fourier.so
-lib/plug_hemisub.so
-lib/plug_histog.so
-lib/plug_imreg.so
-lib/plug_lsqfit.so
-lib/plug_maskave.so
-lib/plug_maskcalc.so
-lib/plug_maxima.so
-lib/plug_nlfit.so
-lib/plug_notes.so
-lib/plug_nth_dataset.so
-lib/plug_nudge.so
-lib/plug_permtest.so
-lib/plug_power.so
-lib/plug_realtime.so
-lib/plug_rename.so
-lib/plug_render.so
-lib/plug_reorder.so
-lib/plug_retroicor.so
-lib/plug_roiedit.so
-lib/plug_roiplot.so
-lib/plug_scatplot.so
-lib/plug_second_dataset.so
-lib/plug_stats.so
-lib/plug_stavg.so
-lib/plug_tag.so
-lib/plug_threshold.so
-lib/plug_ttget.so
-lib/plug_vol2surf.so
-lib/plug_volreg.so
-lib/plug_wavelets.so
-lib/plug_zeropad.so
+include/afni/3ddata.h
+include/afni/afni_environ.h
+include/afni/afni_warp.h
+include/afni/cdflib.h
+include/afni/coxplot.h
+include/afni/cs.h
+include/afni/cs_sort_template.h
+include/afni/editvol.h
+include/afni/eispack.h
+include/afni/f2c.h
+include/afni/killer.h
+include/afni/machdep.h
+include/afni/mcw_glob.h
+include/afni/mcw_malloc.h
+include/afni/mrilib.h
+include/afni/multivector.h
+include/afni/niml.h
+include/afni/tagset.h
+include/afni/thd_compress.h
+include/afni/thd_iochan.h
+include/afni/thd_maker.h
+include/afni/vecmat.h
+include/afni/vol2surf.h
+include/afni/volpack.h
+lib/afni/libSUMA.a
+lib/afni/libcoxplot.a
+lib/afni/libmri.a
+lib/afni/libmrix.a
+lib/afni/libvolpack.a
+lib/afni/model_beta.so
+lib/afni/model_constant.so
+lib/afni/model_convgamma.so
+lib/afni/model_convgamma2a.so
+lib/afni/model_diffexp.so
+lib/afni/model_diffusion.so
+lib/afni/model_gammavar.so
+lib/afni/model_linear.so
+lib/afni/model_linplusort.so
+lib/afni/model_michaelis_menton.so
+lib/afni/model_null.so
+lib/afni/model_quadratic.so
+lib/afni/model_sinewave_ap.so
+lib/afni/model_sinewave_apf.so
+lib/afni/model_squarewave_ap.so
+lib/afni/model_squarewave_apf.so
+lib/afni/model_trnglwave_ap.so
+lib/afni/model_trnglwave_apf.so
+lib/afni/plug_3Ddump_V2.so
+lib/afni/plug_3ddot.so
+lib/afni/plug_3ddup.so
+lib/afni/plug_4Ddump.so
+lib/afni/plug_L1fit.so
+lib/afni/plug_betafit.so
+lib/afni/plug_clust.so
+lib/afni/plug_compress.so
+lib/afni/plug_coorder.so
+lib/afni/plug_copy.so
+lib/afni/plug_crender.so
+lib/afni/plug_deconvolve.so
+lib/afni/plug_delay_V2.so
+lib/afni/plug_drawdset.so
+lib/afni/plug_edit.so
+lib/afni/plug_extract.so
+lib/afni/plug_fourier.so
+lib/afni/plug_hemisub.so
+lib/afni/plug_histog.so
+lib/afni/plug_imreg.so
+lib/afni/plug_lsqfit.so
+lib/afni/plug_maskave.so
+lib/afni/plug_maskcalc.so
+lib/afni/plug_maxima.so
+lib/afni/plug_nlfit.so
+lib/afni/plug_notes.so
+lib/afni/plug_nth_dataset.so
+lib/afni/plug_nudge.so
+lib/afni/plug_permtest.so
+lib/afni/plug_power.so
+lib/afni/plug_realtime.so
+lib/afni/plug_rename.so
+lib/afni/plug_render.so
+lib/afni/plug_reorder.so
+lib/afni/plug_retroicor.so
+lib/afni/plug_roiedit.so
+lib/afni/plug_roiplot.so
+lib/afni/plug_scatplot.so
+lib/afni/plug_second_dataset.so
+lib/afni/plug_stats.so
+lib/afni/plug_stavg.so
+lib/afni/plug_tag.so
+lib/afni/plug_threshold.so
+lib/afni/plug_ttget.so
+lib/afni/plug_vol2surf.so
+lib/afni/plug_volreg.so
+lib/afni/plug_wavelets.so
+lib/afni/plug_zeropad.so
 %%DATADIR%%/Dist_Stamp
 %%DATADIR%%/Readme_dist
 %%DATADIR%%/TT_N27+tlrc.BRIK.gz
@@ -326,6 +328,11 @@ lib/plug_zeropad.so
 %%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD
 %%DATADIR%%/TTatlas+tlrc.BRIK.gz
 %%DATADIR%%/TTatlas+tlrc.HEAD
+%%DATADIR%%/face_erinskinner.jpg
+%%DATADIR%%/face_hang_joon_jo.jpg
+%%DATADIR%%/face_melissah.jpg
+%%DATADIR%%/face_sumabucks.jpg
+%%DATADIR%%/splash_sscc2006.jpg
 %%DATADIR%%/face_JimEliassen.jpg
 %%DATADIR%%/face_JohannaBaas.jpg
 %%DATADIR%%/face_SalloumJB.jpg
@@ -598,3 +605,5 @@ lib/plug_zeropad.so
 %%PORTDOCS%%%%DOCSDIR%%/waver.ps
 %%PORTDOCS%%@dirrm %%DOCSDIR%%
 @dirrm %%DATADIR%%
+@dirrm lib/afni
+@dirrm include/afni