Remove distribfold since it was moved from misc to biology category

Prompted by:	kris,
		Adam Weinberger <adam@vectors.cx>,
		Fernan Aguero <fernan@iib.unsam.edu.ar>,
		others

11 files changed, 0 insertions, 374 deletions

diff --git a/misc/distribfold/Makefile b/misc/distribfold/Makefile
deleted file mode 100644
index a8b93ba7e881..000000000000
--- a/misc/distribfold/Makefile
+++ /dev/null
@@ -1,116 +0,0 @@
-# New ports collection makefile for:	folding@home client
-# Date created:		Sun Sep 29 19:48:01 UTC 2002
-# Whom:			Mario Sergio Fujikawa Ferreira <lioux@FreeBSD.org>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	distribfold
-PORTVERSION=	0.1
-CATEGORIES=	misc net
-MASTER_SITES=	ftp://ftp.mshri.on.ca/pub/distribfold/download/
-DISTNAME=	distribfold-current-FreeBSD
-
-MAINTAINER=	lioux@FreeBSD.org
-
-ONLY_FOR_ARCHS=	i386
-USE_REINPLACE=	yes
-NO_BUILD=	yes
-
-WRKSRC=		${WRKDIR}/distribfold
-
-# files to install
-SCRIPT_FILES=	distrib-update foldit
-PROGRAM_FILES=	foldtrajlite
-# installation dir
-DESTINATION_DIR=	${PREFIX}/distribfold
-
-# default users
-DNETFOLD_USER=dnetfold
-DNETFOLD_GROUP=dnetfold
-
-# default number of processors
-WITH_NCPU?=	1
-
-post-patch:
-	@${REINPLACE_CMD} -E -e 's|%%DESTINATION_DIR%%|${DESTINATION_DIR}|' \
-		${WRKSRC}/foldit
-
-pre-install:
-# create users
-	@${SETENV} PKG_PREFIX=${PREFIX} ${SH} \
-		${PKGINSTALL} ${PKGNAME} POST-INSTALL
-
-do-install:
-# remove any patch scrap files 
-.for ext in bak orig
-	@${RM} -f ${WRKSRC}/*.${ext}
-.endfor
-# strip binaries
-.for file in ${PROGRAM_FILES}
-	@${STRIP_CMD} ${WRKSRC}/${file}
-.endfor
-# install startup script
-	@${INSTALL_SCRIPT} ${WRKDIR}/distribfold.sh ${PREFIX}/etc/rc.d
-# for every cpu directory
-	@ncpu=`${CAT} ${WRKDIR}/ncpu` ; \
-	for dir in `${FILESDIR}/number_of_dirs.sh $${ncpu}` ; do \
-		DESTINATION_DIR=${DESTINATION_DIR}/cpu$${dir} ; \
-		${MKDIR} $${DESTINATION_DIR} ; \
-		${INSTALL_DATA} ${WRKSRC}/* $${DESTINATION_DIR} ; \
-		${CHGRP} -R ${DNETFOLD_GROUP} $${DESTINATION_DIR} ; \
-		${CHMOD} g+w $${DESTINATION_DIR} ; \
-		${CHOWN} ${DNETFOLD_USER} $${DESTINATION_DIR}/* ; \
-		${CHMOD} u+w $${DESTINATION_DIR}/* ; \
-		for file in ${PROGRAM_FILES} ${SCRIPT_FILES} ; do \
-			${CHMOD} 0755 $${DESTINATION_DIR}/$${file} ; \
-		done ; \
-	done
-# display package message
-	@${CAT} ${PKGMESSAGE}
-
-post-install: cook-install-plist
-
-.include <bsd.port.pre.mk>
-
-pre-everything::
-.if ${WITH_NCPU} < 1
-	@${ECHO_MSG} "===> Number of processors HAS to be at least 1"
-	@${ECHO_MSG} "===> (${WITH_NCPU}) IS NOT"
-	@${FALSE}
-.endif
-	@${ECHO_MSG} "=======> ATTENTION <======="
-	@${ECHO_MSG} "===> If you want to have multiple copies of this program"
-	@${ECHO_MSG} "===> running in order to make better use of your SMP"
-	@${ECHO_MSG} "===> system, set WITH_CPU to the number of cpus"
-	@${ECHO_MSG} "===> available in your system"
-	@${ECHO_MSG} "===> For example, 2 cpus. \"make WITH_CPU=2\""
-	@${ECHO_MSG} "===> Do not use this variable if you do not have a SMP"
-	@${ECHO_MSG} "===> system. There is no advantage otherwise."
-
-do-configure:
-# prepare startup script
-	@${SED} -e 's|%%DNETFOLD_USER%%|${DNETFOLD_USER}|' \
-		-e 's|%%DESTINATION_DIR%%|${DESTINATION_DIR}|' \
-		-e 's|%%NCPU%%|${WITH_NCPU}|' \
-		${FILESDIR}/distribfold.sh > ${WRKDIR}/distribfold.sh
-# record number of cpus
-	@${ECHO} ${WITH_NCPU} > ${WRKDIR}/ncpu
-
-cook-install-plist: generate-plist
-.if ${WITH_NCPU} > 1
-	@${GREP} cpu0 ${TMPPLIST} > ${WRKDIR}/plist
-	@${TAIL} -n 2 ${TMPPLIST} > ${WRKDIR}/plist.end
-	@${CP} /dev/null ${WRKDIR}/plistN
-# for every cpu directory
-	@ncpu=`${CAT} ${WRKDIR}/ncpu` ; \
-	for dir in `${FILESDIR}/number_of_dirs.sh $${ncpu}` ; do \
-		${SED} -e "s|cpu0|cpu$${dir}|" ${WRKDIR}/plist >> ${WRKDIR}/plistN ; \
-	done
-	@${CP} /dev/null ${TMPPLIST}
-.for file in plistN plist.end
-	@${CAT} ${WRKDIR}/${file} >> ${TMPPLIST}
-.endfor
-.endif
-
-.include <bsd.port.post.mk>
diff --git a/misc/distribfold/distinfo b/misc/distribfold/distinfo
deleted file mode 100644
index caca45379ff2..000000000000
--- a/misc/distribfold/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (distribfold-current-FreeBSD.tar.gz) = cd04da97523b2246c551198e564da3b1
diff --git a/misc/distribfold/files/distribfold.sh b/misc/distribfold/files/distribfold.sh
deleted file mode 100644
index fc6c75095c6a..000000000000
--- a/misc/distribfold/files/distribfold.sh
+++ /dev/null
@@ -1,61 +0,0 @@
-#!/bin/sh
-# taken from misc/dnetc by dbaker@distributed.net
-
-prefix="%%DESTINATION_DIR%%"
-ncpu=%%NCPU%%
-
-case "$1" in
-start)
-	while [ ${ncpu} -gt 0 ];
-	do
-		# update cpu count
-		ncpu=$((${ncpu} - 1))
-
-		# dir for current cpu
-		dir="${prefix}/cpu${ncpu}"
-
-		if [ ! -d $dir ]; then
-		 logger -i "distribfold client directory doesn't exist. ($dir)."
-		 exit
-		fi
-
-		if [ ! -f $dir/foldtrajlite ]; then
-		 logger -i "distribfold client doesn't exist. ($dir/dfoldtrajlite)."
-		 exit
-		fi
-
-		if [ ! -f $dir/handle.txt ]; then
-		 logger -i "distribfold client is not configured. 'su -m %%DNETFOLD_USER%% -c $dir/foldit' to configure it."
-		 echo "distribfold client is not configured. 'su -m %%DNETFOLD_USER%% -c $dir/foldit' to configure it."
-		 exit
-		fi
-
-		# start client for current cpu
-		su -m %%DNETFOLD_USER%% -c "cd $dir && ./foldit" 2>/dev/null >/dev/null &
-	done
-
-	echo -n " distribfold"
-	;;
-stop)
-	while [ ${ncpu} -gt 0 ];
-	do
-		# update cpu count
-		ncpu=$((${ncpu} - 1))
-
-		# dir for current cpu
-		dir="${prefix}/cpu${ncpu}"
-
-		rm $dir/foldtrajlite.lock
-	done
-
-	# give clients enough time to shutdown
-	# 5 seconds minimum + 5 seconds per number of clients
-	sleep $((5 + $((5 * ${ncpu})))) && echo -n " distribfold"
-	;;
-*)
-	echo "Usage: `basename $0` {start|stop}" >&2
-	exit 64
-	;;
-esac
-
-exit 0
diff --git a/misc/distribfold/files/number_of_dirs.sh b/misc/distribfold/files/number_of_dirs.sh
deleted file mode 100644
index bdb3b87cc56b..000000000000
--- a/misc/distribfold/files/number_of_dirs.sh
+++ /dev/null
@@ -1,16 +0,0 @@
-#!/bin/sh
-
-ncpu=${1}
-current_list=""
-
-while [ ${ncpu} -gt 0 ];
-do
-	# update cpu count
-	ncpu=$((${ncpu} - 1))
-
-	current_list="${current_list} ${ncpu}"
-done
-
-echo ${current_list}
-
-exit 0
diff --git a/misc/distribfold/files/patch-foldit b/misc/distribfold/files/patch-foldit
deleted file mode 100644
index 3543505e05e8..000000000000
--- a/misc/distribfold/files/patch-foldit
+++ /dev/null
@@ -1,16 +0,0 @@
---- foldit.orig	Sun Sep 29 16:49:55 2002
-+++ foldit	Sun Sep 29 16:50:42 2002
-@@ -1,4 +1,7 @@
- #!/bin/sh
-+
-+cd %%DESTINATION_DIR%%
-+
- if [ -f donename.dat ]
- then
- 	rm -f tmpfoldit.bat
-@@ -23,4 +26,4 @@
- 		fi
- 	fi	
- fi	
--./foldtrajlite -f protein -n native 
-+exec ./foldtrajlite -f protein -n native 
diff --git a/misc/distribfold/pkg-comment b/misc/distribfold/pkg-comment
deleted file mode 100644
index 594de1538be5..000000000000
--- a/misc/distribfold/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-distribfold.org distributed protein folding project
diff --git a/misc/distribfold/pkg-deinstall b/misc/distribfold/pkg-deinstall
deleted file mode 100644
index 52cc5bc4aec5..000000000000
--- a/misc/distribfold/pkg-deinstall
+++ /dev/null
@@ -1,63 +0,0 @@
-#! /bin/sh
-#
-# $FreeBSD$
-# taken from net/cvsup-mirror
-
-PATH=/bin:/usr/sbin
-
-DNETFOLD_USER=${DNETFOLD_USER:-dnetfold}
-DNETFOLD_GROUP=${DNETFOLD_GROUP:-dnetfold}
-
-ask() {
-    local question default answer
-
-    question=$1
-    default=$2
-    if [ -z "${PACKAGE_BUILDING}" ]; then
-	read -p "${question} [${default}]? " answer
-    fi
-    if [ x${answer} = x ]; then
-	answer=${default}
-    fi
-    echo ${answer}
-}
-
-yesno() {
-    local dflt question answer
-
-    question=$1
-    dflt=$2
-    while :; do
-	answer=$(ask "${question}" "${dflt}")
-	case "${answer}" in
-	[Yy]*)		return 0;;
-	[Nn]*)		return 1;;
-	esac
-	echo "Please answer yes or no."
-    done
-}
-
-delete_account() {
-    local u g home
-
-    u=$1
-    g=$2
-    if yesno "Do you want me to remove group \"${g}\"" y; then
-	pw groupdel -n ${g}
-	echo "Done."
-    fi
-    if yesno "Do you want me to remove user \"${u}\"" y; then
-	eval home=~${u}
-	pw userdel -n ${u}
-	echo "Done."
-	if [ -d "${home}" ]; then
-	    echo "Please remember to remove the home directory \"${home}\""
-	fi
-    fi
-}
-
-if [ x$2 != xDEINSTALL ]; then
-    exit
-fi
-
-delete_account ${DNETFOLD_USER} ${DNETFOLD_GROUP}
diff --git a/misc/distribfold/pkg-descr b/misc/distribfold/pkg-descr
deleted file mode 100644
index b43f2049ac09..000000000000
--- a/misc/distribfold/pkg-descr
+++ /dev/null
@@ -1,24 +0,0 @@
-[ excerpt from developer's site ]
-
-This is the distribfold.org's client. 
-
-It makes protein structures to help sample the enormous size of
-protein conformatoinal space. We hope to find a few good samples
-and understand how a large computation can help crack the problem
-of predicting protein structure - the protein folding problem.
-
-Proteins have a vast number of folds, larger than we could hope to
-compute even with distributed computing. Usually only one fold is
-found in nature. The Distributed Folding Project aims to test our
-new protein folding algorithm. We want see if it can reproduce
-natural protein folds after making extremely large samples of many
-different folds.
-
-With your help, we will create the largest samples of protein folds
-ever computed. First we will make 1 Billion (1,000,000,000) folds
-for 5 small proteins, then we will try 10 Billion (10,000,000,000)
-for another 10 large proteins. By the end of our first phase, we
-hope to make over 100 Billion protein folds spanning 15 different
-proteins.
-
-WWW: http://www.distributedfolding.org/
diff --git a/misc/distribfold/pkg-install b/misc/distribfold/pkg-install
deleted file mode 100644
index c7fb6adf745a..000000000000
--- a/misc/distribfold/pkg-install
+++ /dev/null
@@ -1,41 +0,0 @@
-#! /bin/sh
-#
-# $FreeBSD$
-# taken from devel/perforce
-
-PATH=/bin:/usr/sbin
-
-DNETFOLD_USER=${DNETFOLD_USER:-dnetfold}
-DNETFOLD_GROUP=${DNETFOLD_GROUP:-dnetfold}
-
-case $2 in
-POST-INSTALL)
-	USER=${DNETFOLD_USER}
-	GROUP=${DNETFOLD_GROUP}
-
-	if pw group show "${GROUP}" 2>/dev/null; then
-		echo "You already have a group \"${GROUP}\", so I will use it."
-	else
-		if pw groupadd ${GROUP} ; then
-			echo "Added group \"${GROUP}\"."
-		else
-			echo "Adding group \"${GROUP}\" failed..."
-			exit 1
-		fi
-	fi
-
-	if pw user show "${USER}" 2>/dev/null; then
-		echo "You already have a user \"${USER}\", so I will use it."
-	else
-		if pw useradd ${USER} -g ${GROUP} -h - \
-			-d /nonexistent -c "distribfold Daemon" -s /sbin/nologin
-		then
-			echo "Added user \"${USER}\"."
-		else
-			echo "Adding user \"${USER}\" failed..."
-			exit 1
-		fi
-	fi
-
-	;;
-esac
diff --git a/misc/distribfold/pkg-message b/misc/distribfold/pkg-message
deleted file mode 100644
index b80f0a4e35ca..000000000000
--- a/misc/distribfold/pkg-message
+++ /dev/null
@@ -1,13 +0,0 @@
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-! REMEMBER REMEMBER REMEMBER REMEMBER REMEMBER REMEMBER REMEMBER REMEMBER !
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
-
-You have to run '/usr/local/distribfold/cpu0/foldit' to configure it
-BEFORE trying to use distribfold.
-
-It will ask you questions on how it should work. It will NOT work
-if you do not run it and answer these questions.
-
-Do it now before you forget.
diff --git a/misc/distribfold/pkg-plist b/misc/distribfold/pkg-plist
deleted file mode 100644
index 69b889f49765..000000000000
--- a/misc/distribfold/pkg-plist
+++ /dev/null
@@ -1,22 +0,0 @@
-distribfold/cpu0/blpotential.txt
-distribfold/cpu0/bstdt.val
-distribfold/cpu0/cbdata
-distribfold/cpu0/CompatibilityNotes.txt
-distribfold/cpu0/copyright
-distribfold/cpu0/native.val
-distribfold/cpu0/param19_eef1.inp
-distribfold/cpu0/protein.trj
-distribfold/cpu0/readme1st.txt
-distribfold/cpu0/rotlib.bin.bz2
-distribfold/cpu0/skel.prt
-distribfold/cpu0/solvpar.inp
-distribfold/cpu0/toph19_eef1.inp
-distribfold/cpu0/whatsnew.txt
-distribfold/cpu0/zhangatm.txt
-distribfold/cpu0/zhangeij.txt
-distribfold/cpu0/distrib-update
-distribfold/cpu0/foldit
-distribfold/cpu0/foldtrajlite
-@unexec rmdir %D/distribfold/cpu0 2>/dev/null || true
-etc/rc.d/distribfold.sh
-@unexec rmdir %D/distribfold 2>/dev/null || echo "If you are permanently removing this port, you should do a ``rm -rf ${PKG_PREFIX}/distribfold`` to remove any binary, configuration and log files left." | fmt