Update to 1.4.1

PR:		34466
Submitted by:	maintainer

9 files changed, 5763 insertions, 4821 deletions

diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile
index 100b753fbad8..9c2240c055a5 100644
--- a/math/R-letter/Makefile
+++ b/math/R-letter/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	R
-PORTVERSION=	1.3.1
+PORTVERSION=	1.4.1
 CATEGORIES=	math
 MASTER_SITES=	http://cran.r-project.org/src/base/ \
 		ftp://cran.r-project.org/pub/R/src/base/ \
diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo
index 3e05041657ad..d1f62422d9ed 100644
--- a/math/R-letter/distinfo
+++ b/math/R-letter/distinfo
@@ -1 +1 @@
-MD5 (R-1.3.1.tgz) = 08ede7a15abea4d8efdb74425cbed706
+MD5 (R-1.4.1.tgz) = bf482598325347c7997477eb778552e8
diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist
index 878faa4134d5..4ece4dd87dcb 100644
--- a/math/R-letter/pkg-plist
+++ b/math/R-letter/pkg-plist
@@ -32,6 +32,44 @@ lib/R/afm/tibi____.afm
 lib/R/afm/tii_____.afm
 lib/R/afm/tir_____.afm
 lib/R/afm/sy______.afm
+lib/R/afm/a010013l.afm
+lib/R/afm/a010015l.afm
+lib/R/afm/a010033l.afm
+lib/R/afm/a010035l.afm
+lib/R/afm/b018012l.afm
+lib/R/afm/b018015l.afm
+lib/R/afm/b018032l.afm
+lib/R/afm/b018035l.afm
+lib/R/afm/n022003l.afm
+lib/R/afm/n022004l.afm
+lib/R/afm/n022023l.afm
+lib/R/afm/n022024l.afm
+lib/R/afm/n019003l.afm
+lib/R/afm/n019004l.afm
+lib/R/afm/n019023l.afm
+lib/R/afm/n019024l.afm
+lib/R/afm/n019043l.afm
+lib/R/afm/n019044l.afm
+lib/R/afm/n019063l.afm
+lib/R/afm/n019064l.afm
+lib/R/afm/c059013l.afm
+lib/R/afm/c059016l.afm
+lib/R/afm/c059033l.afm
+lib/R/afm/c059036l.afm
+lib/R/afm/p052003l.afm
+lib/R/afm/p052004l.afm
+lib/R/afm/p052023l.afm
+lib/R/afm/p052024l.afm
+lib/R/afm/n021003l.afm
+lib/R/afm/n021004l.afm
+lib/R/afm/n021023l.afm
+lib/R/afm/n021024l.afm
+lib/R/afm/s050000l.afm
+lib/R/afm/CM_regular_10.afm
+lib/R/afm/CM_boldx_10.afm
+lib/R/afm/CM_italic_10.afm
+lib/R/afm/CM_boldx_italic_10.afm
+lib/R/afm/CM_symbol_10.afm
 lib/R/afm/AdobeStd.enc
 lib/R/afm/AdobeSym.enc
 lib/R/afm/ISOLatin1.enc
@@ -76,6 +114,7 @@ lib/R/doc/manual/R-intro.html
 lib/R/doc/manual/R-lang.html
 lib/R/etc/Makeconf
 lib/R/etc/Renviron
+lib/R/share/R/firstlib.R
 lib/R/share/make/shlib.mk
 lib/R/share/make/tests.mk
 lib/R/share/perl/R/Dcf.pm
@@ -86,6 +125,8 @@ lib/R/share/perl/R/Rdtools.pm
 lib/R/share/perl/R/Utils.pm
 lib/R/share/perl/Text/DelimMatch.pm
 lib/R/share/perl/Rd2contents.pl
+lib/R/share/perl/build-help-mac.pl
+lib/R/share/perl/build-help-windows.pl
 lib/R/share/perl/build-help.pl
 lib/R/share/perl/extract-usage.pl
 lib/R/share/perl/hhw-to-rtf.pl
@@ -125,9 +166,13 @@ lib/R/bin/R.bin
 lib/R/include/R_ext/Applic.h
 lib/R/include/R_ext/Arith.h
 lib/R/include/R_ext/Boolean.h
+lib/R/include/R_ext/Callbacks.h
 lib/R/include/R_ext/Complex.h
 lib/R/include/R_ext/Constants.h
 lib/R/include/R_ext/Error.h
+lib/R/include/R_ext/GraphicsDevice.h
+lib/R/include/R_ext/GraphicsEngine.h
+lib/R/include/R_ext/GraphicsBase.h
 lib/R/include/R_ext/Linpack.h
 lib/R/include/R_ext/Mathlib.h
 lib/R/include/R_ext/Memory.h
@@ -140,6 +185,7 @@ lib/R/include/R_ext/RConverters.h
 lib/R/include/R_ext/Rdynload.h
 lib/R/include/R_ext/Utils.h
 lib/R/include/R_ext/eventloop.h
+lib/R/include/R_ext/libextern.h
 lib/R/include/R.h
 lib/R/include/S.h
 lib/R/include/Rdefines.h
@@ -152,48 +198,48 @@ lib/R/modules/R_X11.so
 lib/R/modules/internet.so
 lib/R/modules/lapack.so
 lib/R/modules/vfonts.so
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-lib/R/library/nls/help/BOD
-lib/R/library/nls/help/CO2
-lib/R/library/nls/help/ChickWeight
-lib/R/library/nls/help/DNase
-lib/R/library/nls/help/Indometh
-lib/R/library/nls/help/Loblolly
-lib/R/library/nls/help/NLSstAsymptotic
-lib/R/library/nls/help/NLSstClosestX
-lib/R/library/nls/help/NLSstLfAsymptote
-lib/R/library/nls/help/NLSstRtAsymptote
-lib/R/library/nls/help/Orange
-lib/R/library/nls/help/Puromycin
-lib/R/library/nls/help/SSasymp
-lib/R/library/nls/help/SSasympOff
-lib/R/library/nls/help/SSasympOrig
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-lib/R/library/nls/help/selfStart
-lib/R/library/nls/help/selfStart.default
-lib/R/library/nls/help/selfStart.formula
-lib/R/library/nls/help/setNames
-lib/R/library/nls/help/AnIndex
+lib/R/library/nls/html/sortedXyData.html
+lib/R/library/nls/html/BOD.html
+lib/R/library/nls/html/CO2.html
+lib/R/library/nls/html/ChickWeight.html
+lib/R/library/nls/html/DNase.html
+lib/R/library/nls/html/Indometh.html
+lib/R/library/nls/html/Loblolly.html
+lib/R/library/nls/html/NLSstAsymptotic.html
+lib/R/library/nls/html/NLSstClosestX.html
+lib/R/library/nls/html/NLSstLfAsymptote.html
+lib/R/library/nls/html/NLSstRtAsymptote.html
+lib/R/library/nls/html/Orange.html
+lib/R/library/nls/html/Puromycin.html
+lib/R/library/nls/html/SSasymp.html
+lib/R/library/nls/html/SSasympOff.html
+lib/R/library/nls/html/SSasympOrig.html
+lib/R/library/nls/html/SSbiexp.html
+lib/R/library/nls/html/SSfol.html
+lib/R/library/nls/html/SSfpl.html
+lib/R/library/nls/html/Theoph.html
+lib/R/library/nls/html/SSgompertz.html
+lib/R/library/nls/html/SSlogis.html
+lib/R/library/nls/html/SSmicmen.html
+lib/R/library/nls/html/SSweibull.html
+lib/R/library/nls/html/asOneSidedFormula.html
+lib/R/library/nls/html/clearNames.html
+lib/R/library/nls/html/formula.nls.html
+lib/R/library/nls/html/getInitial.html
+lib/R/library/nls/html/nls.html
+lib/R/library/nls/html/nls.control.html
+lib/R/library/nls/html/nlsModel.html
+lib/R/library/nls/html/numericDeriv.html
+lib/R/library/nls/html/plot.profile.nls.html
+lib/R/library/nls/html/predict.nls.html
+lib/R/library/nls/html/profile.nls.html
+lib/R/library/nls/html/profiler.html
+lib/R/library/nls/html/profiler.nls.html
+lib/R/library/nls/html/selfStart.html
+lib/R/library/nls/html/setNames.html
+lib/R/library/nls/html/selfStart.default.html
+lib/R/library/nls/html/selfStart.formula.html
+lib/R/library/nls/html/00Index.html
 lib/R/library/nls/R-ex/sortedXyData.R
 lib/R/library/nls/R-ex/CO2.R
 lib/R/library/nls/R-ex/ChickWeight.R
@@ -276,48 +322,48 @@ lib/R/library/nls/latex/selfStart.default.tex
 lib/R/library/nls/latex/selfStart.formula.tex
 lib/R/library/nls/latex/setNames.tex
 lib/R/library/nls/latex/BOD.tex
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-lib/R/library/nls/html/BOD.html
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-lib/R/library/nls/html/DNase.html
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-lib/R/library/nls/html/NLSstLfAsymptote.html
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-lib/R/library/nls/html/Orange.html
-lib/R/library/nls/html/Puromycin.html
-lib/R/library/nls/html/SSasymp.html
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-lib/R/library/nls/html/SSbiexp.html
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-lib/R/library/nls/html/numericDeriv.html
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-lib/R/library/nls/html/predict.nls.html
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-lib/R/library/nls/html/selfStart.default.html
-lib/R/library/nls/html/selfStart.formula.html
-lib/R/library/nls/html/00Index.html
+lib/R/library/nls/help/sortedXyData
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+lib/R/library/nls/help/ChickWeight
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@@ -328,13 +374,43 @@ lib/R/library/nls/data/Loblolly.R
 lib/R/library/nls/data/Orange.R
 lib/R/library/nls/data/Puromycin.R
 lib/R/library/nls/data/00Index
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+lib/R/library/ctest/help/ansari.test
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 lib/R/library/base/R-ex/Arithmetic.R
 lib/R/library/base/R-ex/Bessel.R
 lib/R/library/base/R-ex/Beta.R
@@ -1318,9 +1514,9 @@ lib/R/library/base/R-ex/Random-user.R
 lib/R/library/base/R-ex/Random.R
 lib/R/library/base/R-ex/Recall.R
 lib/R/library/base/R-ex/Round.R
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 lib/R/library/base/R-ex/SignRank.R
 lib/R/library/base/R-ex/Special.R
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 lib/R/library/base/R-ex/Sys.info.R
 lib/R/library/base/R-ex/Sys.sleep.R
 lib/R/library/base/R-ex/Sys.time.R
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 lib/R/library/base/R-ex/array.R
 lib/R/library/base/R-ex/arrows.R
 lib/R/library/base/R-ex/as.POSIXlt.R
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 lib/R/library/base/R-ex/as.function.R
 lib/R/library/base/R-ex/assign.R
 lib/R/library/base/R-ex/assocplot.R
@@ -1375,7 +1572,9 @@ lib/R/library/base/R-ex/ave.R
 lib/R/library/base/R-ex/axis.POSIXct.R
 lib/R/library/base/R-ex/axis.R
 lib/R/library/base/R-ex/backsolve.R
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 lib/R/library/base/R-ex/barplot.R
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 lib/R/library/base/R-ex/birthday.R
 lib/R/library/base/R-ex/body.R
 lib/R/library/base/R-ex/box.R
@@ -1396,7 +1595,6 @@ lib/R/library/base/R-ex/character.R
 lib/R/library/base/R-ex/charmatch.R
 lib/R/library/base/R-ex/chartr.R
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 lib/R/library/base/R-ex/chickwts.R
 lib/R/library/base/R-ex/chol.R
 lib/R/library/base/R-ex/chol2inv.R
@@ -1421,7 +1619,6 @@ lib/R/library/base/R-ex/contrasts.R
 lib/R/library/base/R-ex/converters.R
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 lib/R/library/base/R-ex/cor.R
 lib/R/library/base/R-ex/count.fields.R
 lib/R/library/base/R-ex/crossprod.R
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 lib/R/library/base/R-ex/gc.R
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 lib/R/library/base/R-ex/getwd.R
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 lib/R/library/base/R-ex/glm.R
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 lib/R/library/base/R-ex/gray.R
 lib/R/library/base/R-ex/grep.R
 lib/R/library/base/R-ex/grid.R
@@ -1516,15 +1714,17 @@ lib/R/library/base/R-ex/help.search.R
 lib/R/library/base/R-ex/help.start.R
 lib/R/library/base/R-ex/hist.R
 lib/R/library/base/R-ex/hsv.R
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 lib/R/library/base/R-ex/ifelse.R
 lib/R/library/base/R-ex/image.R
 lib/R/library/base/R-ex/infert.R
 lib/R/library/base/R-ex/influence.measures.R
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 lib/R/library/base/R-ex/integrate.R
 lib/R/library/base/R-ex/interaction.R
 lib/R/library/base/R-ex/interaction.plot.R
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 lib/R/library/base/R-ex/interactive.R
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 lib/R/library/base/R-ex/iris.R
 lib/R/library/base/R-ex/is.empty.R
 lib/R/library/base/R-ex/is.finite.R
@@ -1549,11 +1749,13 @@ lib/R/library/base/R-ex/list.files.R
 lib/R/library/base/R-ex/lm.R
 lib/R/library/base/R-ex/lm.influence.R
 lib/R/library/base/R-ex/lm.summaries.R
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 lib/R/library/base/R-ex/lmfit.R
 lib/R/library/base/R-ex/load.R
 lib/R/library/base/R-ex/localeconv.R
 lib/R/library/base/R-ex/locales.R
 lib/R/library/base/R-ex/logLik.R
+lib/R/library/base/R-ex/logLik.glm.R
 lib/R/library/base/R-ex/logLik.lm.R
 lib/R/library/base/R-ex/loglin.R
 lib/R/library/base/R-ex/longley.R
@@ -1568,7 +1770,6 @@ lib/R/library/base/R-ex/mahalanobis.R
 lib/R/library/base/R-ex/make.link.R
 lib/R/library/base/R-ex/make.names.R
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 lib/R/library/base/R-ex/margin.table.R
 lib/R/library/base/R-ex/mat.or.vec.R
 lib/R/library/base/R-ex/match.R
@@ -1619,6 +1820,7 @@ lib/R/library/base/R-ex/order.R
 lib/R/library/base/R-ex/outer.R
 lib/R/library/base/R-ex/p.adjust.R
 lib/R/library/base/R-ex/package.contents.R
+lib/R/library/base/R-ex/packageStatus.R
 lib/R/library/base/R-ex/package.skeleton.R
 lib/R/library/base/R-ex/pairs.R
 lib/R/library/base/R-ex/pairs.formula.R
@@ -1643,9 +1845,9 @@ lib/R/library/base/R-ex/plotfactor.R
 lib/R/library/base/R-ex/plotformula.R
 lib/R/library/base/R-ex/plothistogram.R
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 lib/R/library/base/R-ex/pmatch.R
 lib/R/library/base/R-ex/points.R
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 lib/R/library/base/R-ex/pos.to.env.R
@@ -1668,11 +1870,11 @@ lib/R/library/base/R-ex/proc.time.R
 lib/R/library/base/R-ex/prod.R
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 lib/R/library/base/R-ex/qqnorm.R
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 lib/R/library/base/R-ex/quantile.R
@@ -1680,15 +1882,18 @@ lib/R/library/base/R-ex/quit.R
 lib/R/library/base/R-ex/randu.R
 lib/R/library/base/R-ex/range.R
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 lib/R/library/base/R-ex/relevel.R
 lib/R/library/base/R-ex/rep.R
 lib/R/library/base/R-ex/replications.R
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 lib/R/library/base/R-ex/reshapeLong.R
 lib/R/library/base/R-ex/reshapeWide.R
 lib/R/library/base/R-ex/rev.R
@@ -1729,7 +1934,6 @@ lib/R/library/base/R-ex/step.R
 lib/R/library/base/R-ex/stop.R
 lib/R/library/base/R-ex/stopifnot.R
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 lib/R/library/base/R-ex/stripchart.R
 lib/R/library/base/R-ex/strptime.R
 lib/R/library/base/R-ex/strsplit.R
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 lib/R/library/base/R-ex/tempfile.R
 lib/R/library/base/R-ex/termplot.R
 lib/R/library/base/R-ex/text.R
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 lib/R/library/base/R-ex/zC.R
 lib/R/library/base/R-ex/zMachine.R
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 lib/R/library/base/R-ex/Rprof.R
 lib/R/library/base/R-ex/gnome.R
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 lib/R/library/base/R-ex/AIC.R
 lib/R/library/base/latex/x11.tex
 lib/R/library/base/latex/AIC.logLik.tex
@@ -1858,7 +2069,6 @@ lib/R/library/base/latex/RdUtils.tex
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 lib/R/library/base/latex/Rhome.tex
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-lib/R/library/base/latex/Script.tex
 lib/R/library/base/latex/SignRank.tex
 lib/R/library/base/latex/Special.tex
 lib/R/library/base/latex/Startup.tex
@@ -1904,6 +2114,7 @@ lib/R/library/base/latex/args.tex
 lib/R/library/base/latex/array.tex
 lib/R/library/base/latex/arrows.tex
 lib/R/library/base/latex/as.POSIXlt.tex
+lib/R/library/base/latex/as.environment.tex
 lib/R/library/base/latex/as.function.tex
 lib/R/library/base/latex/assign.tex
 lib/R/library/base/latex/assocplot.tex
@@ -1914,10 +2125,12 @@ lib/R/library/base/latex/attr.tex
 lib/R/library/base/latex/attributes.tex
 lib/R/library/base/latex/autoload.tex
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-lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/axis.tex
+lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/backsolve.tex
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 lib/R/library/base/latex/barplot.tex
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 lib/R/library/base/latex/birthday.tex
 lib/R/library/base/latex/body.tex
 lib/R/library/base/latex/box.tex
@@ -1936,21 +2149,19 @@ lib/R/library/base/latex/cars.tex
 lib/R/library/base/latex/case.names.tex
 lib/R/library/base/latex/cat.tex
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+lib/R/library/base/latex/co2.tex
 lib/R/library/base/latex/char.expand.tex
 lib/R/library/base/latex/character.tex
-lib/R/library/base/latex/chartr.tex
 lib/R/library/base/latex/charmatch.tex
+lib/R/library/base/latex/chartr.tex
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 lib/R/library/base/latex/chull.tex
 lib/R/library/base/latex/class.tex
 lib/R/library/base/latex/close.socket.tex
-lib/R/library/base/latex/co2.tex
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 lib/R/library/base/latex/coefficients.tex
 lib/R/library/base/latex/col.tex
 lib/R/library/base/latex/col2rgb.tex
@@ -1983,8 +2194,8 @@ lib/R/library/base/latex/data.class.tex
 lib/R/library/base/latex/data.frame.tex
 lib/R/library/base/latex/data.matrix.tex
 lib/R/library/base/latex/dataentry.tex
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 lib/R/library/base/latex/dcf.tex
+lib/R/library/base/latex/date.tex
 lib/R/library/base/latex/debug.tex
 lib/R/library/base/latex/debugger.tex
 lib/R/library/base/latex/delay.tex
@@ -2030,13 +2241,13 @@ lib/R/library/base/latex/example.tex
 lib/R/library/base/latex/exists.tex
 lib/R/library/base/latex/expand.grid.tex
 lib/R/library/base/latex/expand.model.frame.tex
+lib/R/library/base/latex/factor.tex
 lib/R/library/base/latex/expression.tex
-lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/extractAIC.tex
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 lib/R/library/base/latex/factor.scope.tex
 lib/R/library/base/latex/faithful.tex
 lib/R/library/base/latex/family.tex
+lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/file.access.tex
 lib/R/library/base/latex/file.choose.tex
 lib/R/library/base/latex/file.info.tex
@@ -2053,22 +2264,24 @@ lib/R/library/base/latex/format.info.tex
 lib/R/library/base/latex/formatDL.tex
 lib/R/library/base/latex/formatc.tex
 lib/R/library/base/latex/formula.tex
+lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/fourfoldplot.tex
 lib/R/library/base/latex/frame.tex
 lib/R/library/base/latex/freeny.tex
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 lib/R/library/base/latex/ftable.formula.tex
 lib/R/library/base/latex/function.tex
-lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/gc.time.tex
 lib/R/library/base/latex/gctorture.tex
 lib/R/library/base/latex/get.tex
+lib/R/library/base/latex/getNativeSymbolInfo.tex
 lib/R/library/base/latex/getenv.tex
 lib/R/library/base/latex/getwd.tex
 lib/R/library/base/latex/gl.tex
 lib/R/library/base/latex/glm.tex
 lib/R/library/base/latex/glm.control.tex
 lib/R/library/base/latex/glm.summaries.tex
+lib/R/library/base/latex/glm.summary.tex
 lib/R/library/base/latex/gray.tex
 lib/R/library/base/latex/grep.tex
 lib/R/library/base/latex/grid.tex
@@ -2077,6 +2290,7 @@ lib/R/library/base/latex/help.search.tex
 lib/R/library/base/latex/help.start.tex
 lib/R/library/base/latex/hist.tex
 lib/R/library/base/latex/hsv.tex
+lib/R/library/base/latex/identical.tex
 lib/R/library/base/latex/identify.tex
 lib/R/library/base/latex/ifelse.tex
 lib/R/library/base/latex/image.tex
@@ -2095,11 +2309,10 @@ lib/R/library/base/latex/is.finite.tex
 lib/R/library/base/latex/is.function.tex
 lib/R/library/base/latex/is.language.tex
 lib/R/library/base/latex/is.object.tex
+lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/is.recursive.tex
 lib/R/library/base/latex/is.single.tex
-lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/islands.tex
-lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/jitter.tex
 lib/R/library/base/latex/kappa.tex
 lib/R/library/base/latex/kronecker.tex
@@ -2116,14 +2329,17 @@ lib/R/library/base/latex/license.tex
 lib/R/library/base/latex/lines.tex
 lib/R/library/base/latex/list.tex
 lib/R/library/base/latex/list.files.tex
+lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/lm.influence.tex
 lib/R/library/base/latex/lm.summaries.tex
+lib/R/library/base/latex/lm.summary.tex
 lib/R/library/base/latex/lmfit.tex
 lib/R/library/base/latex/load.tex
 lib/R/library/base/latex/localeconv.tex
 lib/R/library/base/latex/locales.tex
 lib/R/library/base/latex/locator.tex
 lib/R/library/base/latex/logLik.tex
+lib/R/library/base/latex/logLik.glm.tex
 lib/R/library/base/latex/logLik.lm.tex
 lib/R/library/base/latex/logical.tex
 lib/R/library/base/latex/loglin.tex
@@ -2163,8 +2379,8 @@ lib/R/library/base/latex/mode.tex
 lib/R/library/base/latex/model.extract.tex
 lib/R/library/base/latex/model.frame.tex
 lib/R/library/base/latex/model.matrix.tex
-lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/morley.tex
+lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/mosaicplot.tex
 lib/R/library/base/latex/mtcars.tex
 lib/R/library/base/latex/mtext.tex
@@ -2177,6 +2393,7 @@ lib/R/library/base/latex/names.tex
 lib/R/library/base/latex/naprint.tex
 lib/R/library/base/latex/nargs.tex
 lib/R/library/base/latex/nchar.tex
+lib/R/library/base/latex/nclass.tex
 lib/R/library/base/latex/nextn.tex
 lib/R/library/base/latex/nhtemp.tex
 lib/R/library/base/latex/nlevels.tex
@@ -2187,6 +2404,7 @@ lib/R/library/base/latex/nrow.tex
 lib/R/library/base/latex/numeric.tex
 lib/R/library/base/latex/object.size.tex
 lib/R/library/base/latex/octmode.tex
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 lib/R/library/base/latex/offset.tex
 lib/R/library/base/latex/on.exit.tex
 lib/R/library/base/latex/optim.tex
@@ -2198,13 +2416,13 @@ lib/R/library/base/latex/p.adjust.tex
 lib/R/library/base/latex/package.contents.tex
 lib/R/library/base/latex/package.dependencies.tex
 lib/R/library/base/latex/package.skeleton.tex
+lib/R/library/base/latex/packageStatus.tex
 lib/R/library/base/latex/page.tex
 lib/R/library/base/latex/pairs.tex
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-lib/R/library/splines/help/AnIndex
 lib/R/library/splines/DESCRIPTION
 lib/R/library/splines/TITLE
 lib/R/library/splines/INDEX
@@ -3180,6 +3439,7 @@ lib/R/library/stepfun/html/00Index.html
 lib/R/library/stepfun/html/ecdf.html
 lib/R/library/stepfun/html/plot.stepfun.html
 lib/R/library/stepfun/html/stepfun.html
+lib/R/library/stepfun/man/stepfun.Rd
 lib/R/library/stepfun/help/AnIndex
 lib/R/library/stepfun/help/ecdf
 lib/R/library/stepfun/help/plot.stepfun
@@ -3188,7 +3448,118 @@ lib/R/library/stepfun/DESCRIPTION
 lib/R/library/stepfun/TITLE
 lib/R/library/stepfun/INDEX
 lib/R/library/stepfun/CONTENTS
-lib/R/library/ts/R/ts
+lib/R/library/tcltk/html/00Index.html
+lib/R/library/tcltk/html/TclInterface.html
+lib/R/library/tcltk/html/TkCommands.html
+lib/R/library/tcltk/html/TkWidgetcmds.html
+lib/R/library/tcltk/html/TkWidgets.html
+lib/R/library/tcltk/html/tkpager.html
+lib/R/library/tcltk/R-ex/TclInterface.R
+lib/R/library/tcltk/R-ex/TkCommands.R
+lib/R/library/tcltk/R-ex/TkWidgetcmds.R
+lib/R/library/tcltk/R-ex/TkWidgets.R
+lib/R/library/tcltk/R-ex/tkpager.R
+lib/R/library/tcltk/latex/TclInterface.tex
+lib/R/library/tcltk/latex/TkCommands.tex
+lib/R/library/tcltk/latex/TkWidgetcmds.tex
+lib/R/library/tcltk/latex/TkWidgets.tex
+lib/R/library/tcltk/latex/tkpager.tex
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+lib/R/library/tcltk/help/TclInterface
+lib/R/library/tcltk/help/TkCommands
+lib/R/library/tcltk/help/TkWidgetcmds
+lib/R/library/tcltk/help/TkWidgets
+lib/R/library/tcltk/help/tkpager
+lib/R/library/tcltk/demo/00Index
+lib/R/library/tcltk/demo/tkcanvas.R
+lib/R/library/tcltk/demo/tkdensity.R
+lib/R/library/tcltk/demo/tkfaq.R
+lib/R/library/tcltk/demo/tkfilefind.R
+lib/R/library/tcltk/demo/tkttest.R
+lib/R/library/tcltk/exec/widget.tcl
+lib/R/library/tcltk/exec/pkgIndex.tcl
+lib/R/library/tcltk/exec/util-dump.tcl
+lib/R/library/tcltk/exec/util-expand.tcl
+lib/R/library/tcltk/exec/util-number.tcl
+lib/R/library/tcltk/exec/util-string.tcl
+lib/R/library/tcltk/exec/util-tk.tcl
+lib/R/library/tcltk/exec/util.tcl
+lib/R/library/tcltk/exec/hierarchy.tcl
+lib/R/library/tcltk/R/tcltk
+lib/R/library/tcltk/man/tcltk.Rd
+lib/R/library/tcltk/DESCRIPTION
+lib/R/library/tcltk/TITLE
+lib/R/library/tcltk/INDEX
+lib/R/library/tcltk/CONTENTS
+lib/R/library/tools/R/tools
+lib/R/library/tools/R-ex/checkFF.R
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+lib/R/library/tools/latex/checkFF.tex
+lib/R/library/tools/latex/checkTnF.tex
+lib/R/library/tools/latex/codoc.tex
+lib/R/library/tools/latex/tools-internal.tex
+lib/R/library/tools/latex/undoc.tex
+lib/R/library/tools/html/checkTnF.html
+lib/R/library/tools/html/QA.html
+lib/R/library/tools/html/checkFF.html
+lib/R/library/tools/html/00Index.html
+lib/R/library/tools/html/codoc.html
+lib/R/library/tools/html/tools-internal.html
+lib/R/library/tools/html/undoc.html
+lib/R/library/tools/man/tools.Rd
+lib/R/library/tools/help/checkTnF
+lib/R/library/tools/help/QA
+lib/R/library/tools/help/checkFF
+lib/R/library/tools/help/AnIndex
+lib/R/library/tools/help/codoc
+lib/R/library/tools/help/tools-internal
+lib/R/library/tools/help/undoc
+lib/R/library/tools/DESCRIPTION
+lib/R/library/tools/TITLE
+lib/R/library/tools/INDEX
+lib/R/library/tools/CONTENTS
+lib/R/library/ts/html/ts.union.html
+lib/R/library/ts/html/BJsales.html
+lib/R/library/ts/html/EuStockMarkets.html
+lib/R/library/ts/html/LakeHuron.html
+lib/R/library/ts/html/UKDriverDeaths.html
+lib/R/library/ts/html/UKLungDeaths.html
+lib/R/library/ts/html/USAccDeaths.html
+lib/R/library/ts/html/acf.html
+lib/R/library/ts/html/ar.html
+lib/R/library/ts/html/ar.ols.html
+lib/R/library/ts/html/arima0.html
+lib/R/library/ts/html/austres.html
+lib/R/library/ts/html/beavers.html
+lib/R/library/ts/html/box.test.html
+lib/R/library/ts/html/cpgram.html
+lib/R/library/ts/html/diffinv.html
+lib/R/library/ts/html/embed.html
+lib/R/library/ts/html/filter.html
+lib/R/library/ts/html/kernapply.html
+lib/R/library/ts/html/kernel.html
+lib/R/library/ts/html/lag.html
+lib/R/library/ts/html/lag.plot.html
+lib/R/library/ts/html/lh.html
+lib/R/library/ts/html/lynx.html
+lib/R/library/ts/html/na.contiguous.html
+lib/R/library/ts/html/nottem.html
+lib/R/library/ts/html/plot.acf.html
+lib/R/library/ts/html/plot.spec.html
+lib/R/library/ts/html/pp.test.html
+lib/R/library/ts/html/spec.ar.html
+lib/R/library/ts/html/spec.pgram.html
+lib/R/library/ts/html/spec.taper.html
+lib/R/library/ts/html/spectrum.html
+lib/R/library/ts/html/stl.html
+lib/R/library/ts/html/stlmethods.html
+lib/R/library/ts/html/sunspot.html
+lib/R/library/ts/html/toeplitz.html
+lib/R/library/ts/html/treering.html
+lib/R/library/ts/html/ts-internal.html
+lib/R/library/ts/html/ts.plot.html
+lib/R/library/ts/html/00Index.html
 lib/R/library/ts/R-ex/ts.union.R
 lib/R/library/ts/R-ex/acf.R
 lib/R/library/ts/R-ex/ar.R
@@ -3204,7 +3575,7 @@ lib/R/library/ts/R-ex/kernapply.R
 lib/R/library/ts/R-ex/kernel.R
 lib/R/library/ts/R-ex/lag.R
 lib/R/library/ts/R-ex/lag.plot.R
-lib/R/library/ts/R-ex/na.omit.ts.R
+lib/R/library/ts/R-ex/na.contiguous.R
 lib/R/library/ts/R-ex/plot.acf.R
 lib/R/library/ts/R-ex/pp.test.R
 lib/R/library/ts/R-ex/spec.ar.R
@@ -3229,7 +3600,6 @@ lib/R/library/ts/latex/austres.tex
 lib/R/library/ts/latex/beavers.tex
 lib/R/library/ts/latex/box.test.tex
 lib/R/library/ts/latex/cpgram.tex
-lib/R/library/ts/latex/diff.ts.tex
 lib/R/library/ts/latex/diffinv.tex
 lib/R/library/ts/latex/embed.tex
 lib/R/library/ts/latex/filter.tex
@@ -3238,8 +3608,9 @@ lib/R/library/ts/latex/kernel.tex
 lib/R/library/ts/latex/lag.tex
 lib/R/library/ts/latex/lag.plot.tex
 lib/R/library/ts/latex/lh.tex
+lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/lynx.tex
-lib/R/library/ts/latex/na.omit.ts.tex
+lib/R/library/ts/latex/na.contiguous.tex
 lib/R/library/ts/latex/nottem.tex
 lib/R/library/ts/latex/plot.acf.tex
 lib/R/library/ts/latex/plot.spec.tex
@@ -3248,7 +3619,6 @@ lib/R/library/ts/latex/spec.ar.tex
 lib/R/library/ts/latex/spec.pgram.tex
 lib/R/library/ts/latex/spec.taper.tex
 lib/R/library/ts/latex/spectrum.tex
-lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/stlmethods.tex
 lib/R/library/ts/latex/sunspot.tex
 lib/R/library/ts/latex/toeplitz.tex
@@ -3256,48 +3626,7 @@ lib/R/library/ts/latex/treering.tex
 lib/R/library/ts/latex/ts-internal.tex
 lib/R/library/ts/latex/ts.plot.tex
 lib/R/library/ts/latex/BJsales.tex
-lib/R/library/ts/html/ts.union.html
-lib/R/library/ts/html/BJsales.html
-lib/R/library/ts/html/EuStockMarkets.html
-lib/R/library/ts/html/LakeHuron.html
-lib/R/library/ts/html/UKDriverDeaths.html
-lib/R/library/ts/html/UKLungDeaths.html
-lib/R/library/ts/html/USAccDeaths.html
-lib/R/library/ts/html/acf.html
-lib/R/library/ts/html/ar.html
-lib/R/library/ts/html/ar.ols.html
-lib/R/library/ts/html/arima0.html
-lib/R/library/ts/html/austres.html
-lib/R/library/ts/html/beavers.html
-lib/R/library/ts/html/box.test.html
-lib/R/library/ts/html/cpgram.html
-lib/R/library/ts/html/diff.ts.html
-lib/R/library/ts/html/diffinv.html
-lib/R/library/ts/html/embed.html
-lib/R/library/ts/html/filter.html
-lib/R/library/ts/html/kernapply.html
-lib/R/library/ts/html/kernel.html
-lib/R/library/ts/html/lag.html
-lib/R/library/ts/html/lag.plot.html
-lib/R/library/ts/html/lh.html
-lib/R/library/ts/html/lynx.html
-lib/R/library/ts/html/na.omit.ts.html
-lib/R/library/ts/html/nottem.html
-lib/R/library/ts/html/plot.acf.html
-lib/R/library/ts/html/plot.spec.html
-lib/R/library/ts/html/pp.test.html
-lib/R/library/ts/html/spec.ar.html
-lib/R/library/ts/html/spec.pgram.html
-lib/R/library/ts/html/spec.taper.html
-lib/R/library/ts/html/spectrum.html
-lib/R/library/ts/html/stl.html
-lib/R/library/ts/html/stlmethods.html
-lib/R/library/ts/html/sunspot.html
-lib/R/library/ts/html/toeplitz.html
-lib/R/library/ts/html/treering.html
-lib/R/library/ts/html/ts-internal.html
-lib/R/library/ts/html/ts.plot.html
-lib/R/library/ts/html/00Index.html
+lib/R/library/ts/libs/ts.so
 lib/R/library/ts/help/ts.union
 lib/R/library/ts/help/BJsales
 lib/R/library/ts/help/EuStockMarkets
@@ -3313,7 +3642,6 @@ lib/R/library/ts/help/austres
 lib/R/library/ts/help/beavers
 lib/R/library/ts/help/box.test
 lib/R/library/ts/help/cpgram
-lib/R/library/ts/help/diff.ts
 lib/R/library/ts/help/diffinv
 lib/R/library/ts/help/embed
 lib/R/library/ts/help/filter
@@ -3323,16 +3651,16 @@ lib/R/library/ts/help/lag
 lib/R/library/ts/help/lag.plot
 lib/R/library/ts/help/lh
 lib/R/library/ts/help/lynx
-lib/R/library/ts/help/na.omit.ts
+lib/R/library/ts/help/na.contiguous
 lib/R/library/ts/help/nottem
 lib/R/library/ts/help/plot.acf
-lib/R/library/ts/help/plot.spec
+lib/R/library/ts/help/stl
 lib/R/library/ts/help/pp.test
+lib/R/library/ts/help/plot.spec
 lib/R/library/ts/help/spec.ar
 lib/R/library/ts/help/spec.pgram
 lib/R/library/ts/help/spec.taper
 lib/R/library/ts/help/spectrum
-lib/R/library/ts/help/stl
 lib/R/library/ts/help/stlmethods
 lib/R/library/ts/help/sunspot
 lib/R/library/ts/help/toeplitz
@@ -3354,54 +3682,13 @@ lib/R/library/ts/data/lynx.R
 lib/R/library/ts/data/nottem.R
 lib/R/library/ts/data/sunspot.R
 lib/R/library/ts/data/00Index
-lib/R/library/ts/libs/ts.so
+lib/R/library/ts/R/ts
+lib/R/library/ts/man/ts.Rd
 lib/R/library/ts/DESCRIPTION
 lib/R/library/ts/TITLE
 lib/R/library/ts/SOURCES
 lib/R/library/ts/INDEX
 lib/R/library/ts/CONTENTS
-lib/R/library/tcltk/help/AnIndex
-lib/R/library/tcltk/help/TclInterface
-lib/R/library/tcltk/help/TkCommands
-lib/R/library/tcltk/help/TkWidgetcmds
-lib/R/library/tcltk/help/TkWidgets
-lib/R/library/tcltk/help/tkpager
-lib/R/library/tcltk/R-ex/TclInterface.R
-lib/R/library/tcltk/R-ex/TkCommands.R
-lib/R/library/tcltk/R-ex/TkWidgetcmds.R
-lib/R/library/tcltk/R-ex/TkWidgets.R
-lib/R/library/tcltk/R-ex/tkpager.R
-lib/R/library/tcltk/latex/TclInterface.tex
-lib/R/library/tcltk/latex/TkCommands.tex
-lib/R/library/tcltk/latex/TkWidgetcmds.tex
-lib/R/library/tcltk/latex/TkWidgets.tex
-lib/R/library/tcltk/latex/tkpager.tex
-lib/R/library/tcltk/html/00Index.html
-lib/R/library/tcltk/html/TclInterface.html
-lib/R/library/tcltk/html/TkCommands.html
-lib/R/library/tcltk/html/TkWidgetcmds.html
-lib/R/library/tcltk/html/TkWidgets.html
-lib/R/library/tcltk/html/tkpager.html
-lib/R/library/tcltk/demo/00Index
-lib/R/library/tcltk/demo/tkcanvas.R
-lib/R/library/tcltk/demo/tkdensity.R
-lib/R/library/tcltk/demo/tkfaq.R
-lib/R/library/tcltk/demo/tkfilefind.R
-lib/R/library/tcltk/demo/tkttest.R
-lib/R/library/tcltk/R/tcltk
-lib/R/library/tcltk/exec/widget.tcl
-lib/R/library/tcltk/exec/pkgIndex.tcl
-lib/R/library/tcltk/exec/util-dump.tcl
-lib/R/library/tcltk/exec/util-expand.tcl
-lib/R/library/tcltk/exec/util-number.tcl
-lib/R/library/tcltk/exec/util-string.tcl
-lib/R/library/tcltk/exec/util-tk.tcl
-lib/R/library/tcltk/exec/util.tcl
-lib/R/library/tcltk/exec/hierarchy.tcl
-lib/R/library/tcltk/DESCRIPTION
-lib/R/library/tcltk/TITLE
-lib/R/library/tcltk/INDEX
-lib/R/library/tcltk/CONTENTS
 lib/R/library/R.css
 lib/R/AUTHORS
 lib/R/COPYING
@@ -3411,88 +3698,114 @@ lib/R/FAQ
 lib/R/NEWS
 lib/R/RESOURCES
 lib/R/THANKS
-@dirrm lib/R/library/tcltk/exec
-@dirrm lib/R/library/tcltk/R
-@dirrm lib/R/library/tcltk/demo
-@dirrm lib/R/library/tcltk/html
-@dirrm lib/R/library/tcltk/latex
-@dirrm lib/R/library/tcltk/R-ex
-@dirrm lib/R/library/tcltk/help
-@dirrm lib/R/library/tcltk
-@dirrm lib/R/library/ts/libs
+@dirrm lib/R/library/ts/man
+@dirrm lib/R/library/ts/R
 @dirrm lib/R/library/ts/data
 @dirrm lib/R/library/ts/help
-@dirrm lib/R/library/ts/html
+@dirrm lib/R/library/ts/libs
 @dirrm lib/R/library/ts/latex
 @dirrm lib/R/library/ts/R-ex
-@dirrm lib/R/library/ts/R
+@dirrm lib/R/library/ts/html
 @dirrm lib/R/library/ts
+@dirrm lib/R/library/tools/help
+@dirrm lib/R/library/tools/man
+@dirrm lib/R/library/tools/html
+@dirrm lib/R/library/tools/latex
+@dirrm lib/R/library/tools/R-ex
+@dirrm lib/R/library/tools/R
+@dirrm lib/R/library/tools
+@dirrm lib/R/library/tcltk/man
+@dirrm lib/R/library/tcltk/R
+@dirrm lib/R/library/tcltk/exec
+@dirrm lib/R/library/tcltk/demo
+@dirrm lib/R/library/tcltk/help
+@dirrm lib/R/library/tcltk/latex
+@dirrm lib/R/library/tcltk/R-ex
+@dirrm lib/R/library/tcltk/html
+@dirrm lib/R/library/tcltk
 @dirrm lib/R/library/stepfun/help
+@dirrm lib/R/library/stepfun/man
 @dirrm lib/R/library/stepfun/html
 @dirrm lib/R/library/stepfun/latex
 @dirrm lib/R/library/stepfun/R-ex
 @dirrm lib/R/library/stepfun/R
 @dirrm lib/R/library/stepfun
-@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines/libs
+@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/man
 @dirrm lib/R/library/splines/html
 @dirrm lib/R/library/splines/latex
 @dirrm lib/R/library/splines/R-ex
-@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines
-@dirrm lib/R/library/base/demo
+@dirrm lib/R/library/base/man
 @dirrm lib/R/library/base/R
+@dirrm lib/R/library/base/demo
 @dirrm lib/R/library/base/data
-@dirrm lib/R/library/base/html
+@dirrm lib/R/library/base/help
 @dirrm lib/R/library/base/latex
 @dirrm lib/R/library/base/R-ex
-@dirrm lib/R/library/base/help
+@dirrm lib/R/library/base/html
 @dirrm lib/R/library/base
 @dirrm lib/R/library/mva/libs
 @dirrm lib/R/library/mva/R
+@dirrm lib/R/library/mva/man
 @dirrm lib/R/library/mva/data
-@dirrm lib/R/library/mva/html
+@dirrm lib/R/library/mva/help
 @dirrm lib/R/library/mva/latex
 @dirrm lib/R/library/mva/R-ex
-@dirrm lib/R/library/mva/help
+@dirrm lib/R/library/mva/html
 @dirrm lib/R/library/mva
-@dirrm lib/R/library/modreg/libs
+@dirrm lib/R/library/modreg/man
+@dirrm lib/R/library/modreg/R
 @dirrm lib/R/library/modreg/data
 @dirrm lib/R/library/modreg/help
-@dirrm lib/R/library/modreg/html
+@dirrm lib/R/library/modreg/libs
 @dirrm lib/R/library/modreg/latex
 @dirrm lib/R/library/modreg/R-ex
-@dirrm lib/R/library/modreg/R
+@dirrm lib/R/library/modreg/html
 @dirrm lib/R/library/modreg
-@dirrm lib/R/library/lqs/help
+@dirrm lib/R/library/methods/libs
+@dirrm lib/R/library/methods/R
+@dirrm lib/R/library/methods/man
+@dirrm lib/R/library/methods/html
+@dirrm lib/R/library/methods/latex
+@dirrm lib/R/library/methods/R-ex
+@dirrm lib/R/library/methods/help
+@dirrm lib/R/library/methods
 @dirrm lib/R/library/lqs/libs
+@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/man
 @dirrm lib/R/library/lqs/html
 @dirrm lib/R/library/lqs/latex
 @dirrm lib/R/library/lqs/R-ex
-@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/help
 @dirrm lib/R/library/lqs
 @dirrm lib/R/library/eda/libs
 @dirrm lib/R/library/eda/R
+@dirrm lib/R/library/eda/man
 @dirrm lib/R/library/eda/demo
-@dirrm lib/R/library/eda/html
+@dirrm lib/R/library/eda/help
 @dirrm lib/R/library/eda/latex
 @dirrm lib/R/library/eda/R-ex
-@dirrm lib/R/library/eda/help
+@dirrm lib/R/library/eda/html
 @dirrm lib/R/library/eda
-@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest/libs
+@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/man
 @dirrm lib/R/library/ctest/html
 @dirrm lib/R/library/ctest/latex
 @dirrm lib/R/library/ctest/R-ex
-@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest
 @dirrm lib/R/library/nls/libs
 @dirrm lib/R/library/nls/R
+@dirrm lib/R/library/nls/man
 @dirrm lib/R/library/nls/data
-@dirrm lib/R/library/nls/html
+@dirrm lib/R/library/nls/help
 @dirrm lib/R/library/nls/latex
 @dirrm lib/R/library/nls/R-ex
-@dirrm lib/R/library/nls/help
+@dirrm lib/R/library/nls/html
 @dirrm lib/R/library/nls
 @dirrm lib/R/library
 @dirrm lib/R/modules
@@ -3505,6 +3818,7 @@ lib/R/THANKS
 @dirrm lib/R/share/perl/R
 @dirrm lib/R/share/perl
 @dirrm lib/R/share/make
+@dirrm lib/R/share/R
 @dirrm lib/R/share
 @dirrm lib/R/etc
 @dirrm lib/R/doc/manual
diff --git a/math/R-project/Makefile b/math/R-project/Makefile
index 100b753fbad8..9c2240c055a5 100644
--- a/math/R-project/Makefile
+++ b/math/R-project/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	R
-PORTVERSION=	1.3.1
+PORTVERSION=	1.4.1
 CATEGORIES=	math
 MASTER_SITES=	http://cran.r-project.org/src/base/ \
 		ftp://cran.r-project.org/pub/R/src/base/ \
diff --git a/math/R-project/distinfo b/math/R-project/distinfo
index 3e05041657ad..d1f62422d9ed 100644
--- a/math/R-project/distinfo
+++ b/math/R-project/distinfo
@@ -1 +1 @@
-MD5 (R-1.3.1.tgz) = 08ede7a15abea4d8efdb74425cbed706
+MD5 (R-1.4.1.tgz) = bf482598325347c7997477eb778552e8
diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist
index 878faa4134d5..4ece4dd87dcb 100644
--- a/math/R-project/pkg-plist
+++ b/math/R-project/pkg-plist
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+lib/R/library/base/html/00Index.html
+lib/R/library/base/R-ex/system.R
 lib/R/library/base/R-ex/Arithmetic.R
 lib/R/library/base/R-ex/Bessel.R
 lib/R/library/base/R-ex/Beta.R
@@ -1318,9 +1514,9 @@ lib/R/library/base/R-ex/Random-user.R
 lib/R/library/base/R-ex/Random.R
 lib/R/library/base/R-ex/Recall.R
 lib/R/library/base/R-ex/Round.R
-lib/R/library/base/R-ex/Script.R
 lib/R/library/base/R-ex/SignRank.R
 lib/R/library/base/R-ex/Special.R
+lib/R/library/base/R-ex/Startup.R
 lib/R/library/base/R-ex/Sys.info.R
 lib/R/library/base/R-ex/Sys.sleep.R
 lib/R/library/base/R-ex/Sys.time.R
@@ -1362,6 +1558,7 @@ lib/R/library/base/R-ex/args.R
 lib/R/library/base/R-ex/array.R
 lib/R/library/base/R-ex/arrows.R
 lib/R/library/base/R-ex/as.POSIXlt.R
+lib/R/library/base/R-ex/as.environment.R
 lib/R/library/base/R-ex/as.function.R
 lib/R/library/base/R-ex/assign.R
 lib/R/library/base/R-ex/assocplot.R
@@ -1375,7 +1572,9 @@ lib/R/library/base/R-ex/ave.R
 lib/R/library/base/R-ex/axis.POSIXct.R
 lib/R/library/base/R-ex/axis.R
 lib/R/library/base/R-ex/backsolve.R
+lib/R/library/base/R-ex/bandwidth.R
 lib/R/library/base/R-ex/barplot.R
+lib/R/library/base/R-ex/bindenv.R
 lib/R/library/base/R-ex/birthday.R
 lib/R/library/base/R-ex/body.R
 lib/R/library/base/R-ex/box.R
@@ -1396,7 +1595,6 @@ lib/R/library/base/R-ex/character.R
 lib/R/library/base/R-ex/charmatch.R
 lib/R/library/base/R-ex/chartr.R
 lib/R/library/base/R-ex/check.options.R
-lib/R/library/base/R-ex/checkFF.R
 lib/R/library/base/R-ex/chickwts.R
 lib/R/library/base/R-ex/chol.R
 lib/R/library/base/R-ex/chol2inv.R
@@ -1421,7 +1619,6 @@ lib/R/library/base/R-ex/contrasts.R
 lib/R/library/base/R-ex/converters.R
 lib/R/library/base/R-ex/convolve.R
 lib/R/library/base/R-ex/coplot.R
-lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/cor.R
 lib/R/library/base/R-ex/count.fields.R
 lib/R/library/base/R-ex/crossprod.R
@@ -1502,12 +1699,13 @@ lib/R/library/base/R-ex/function.R
 lib/R/library/base/R-ex/gc.R
 lib/R/library/base/R-ex/gc.time.R
 lib/R/library/base/R-ex/get.R
+lib/R/library/base/R-ex/getNativeSymbolInfo.R
 lib/R/library/base/R-ex/getenv.R
 lib/R/library/base/R-ex/getwd.R
 lib/R/library/base/R-ex/gl.R
 lib/R/library/base/R-ex/glm.R
 lib/R/library/base/R-ex/glm.control.R
-lib/R/library/base/R-ex/glm.summaries.R
+lib/R/library/base/R-ex/glm.summary.R
 lib/R/library/base/R-ex/gray.R
 lib/R/library/base/R-ex/grep.R
 lib/R/library/base/R-ex/grid.R
@@ -1516,15 +1714,17 @@ lib/R/library/base/R-ex/help.search.R
 lib/R/library/base/R-ex/help.start.R
 lib/R/library/base/R-ex/hist.R
 lib/R/library/base/R-ex/hsv.R
+lib/R/library/base/R-ex/identical.R
 lib/R/library/base/R-ex/ifelse.R
 lib/R/library/base/R-ex/image.R
 lib/R/library/base/R-ex/infert.R
 lib/R/library/base/R-ex/influence.measures.R
+lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/integrate.R
 lib/R/library/base/R-ex/interaction.R
 lib/R/library/base/R-ex/interaction.plot.R
-lib/R/library/base/R-ex/invisible.R
 lib/R/library/base/R-ex/interactive.R
+lib/R/library/base/R-ex/invisible.R
 lib/R/library/base/R-ex/iris.R
 lib/R/library/base/R-ex/is.empty.R
 lib/R/library/base/R-ex/is.finite.R
@@ -1549,11 +1749,13 @@ lib/R/library/base/R-ex/list.files.R
 lib/R/library/base/R-ex/lm.R
 lib/R/library/base/R-ex/lm.influence.R
 lib/R/library/base/R-ex/lm.summaries.R
+lib/R/library/base/R-ex/lm.summary.R
 lib/R/library/base/R-ex/lmfit.R
 lib/R/library/base/R-ex/load.R
 lib/R/library/base/R-ex/localeconv.R
 lib/R/library/base/R-ex/locales.R
 lib/R/library/base/R-ex/logLik.R
+lib/R/library/base/R-ex/logLik.glm.R
 lib/R/library/base/R-ex/logLik.lm.R
 lib/R/library/base/R-ex/loglin.R
 lib/R/library/base/R-ex/longley.R
@@ -1568,7 +1770,6 @@ lib/R/library/base/R-ex/mahalanobis.R
 lib/R/library/base/R-ex/make.link.R
 lib/R/library/base/R-ex/make.names.R
 lib/R/library/base/R-ex/make.socket.R
-lib/R/library/base/R-ex/manova.R
 lib/R/library/base/R-ex/margin.table.R
 lib/R/library/base/R-ex/mat.or.vec.R
 lib/R/library/base/R-ex/match.R
@@ -1619,6 +1820,7 @@ lib/R/library/base/R-ex/order.R
 lib/R/library/base/R-ex/outer.R
 lib/R/library/base/R-ex/p.adjust.R
 lib/R/library/base/R-ex/package.contents.R
+lib/R/library/base/R-ex/packageStatus.R
 lib/R/library/base/R-ex/package.skeleton.R
 lib/R/library/base/R-ex/pairs.R
 lib/R/library/base/R-ex/pairs.formula.R
@@ -1643,9 +1845,9 @@ lib/R/library/base/R-ex/plotfactor.R
 lib/R/library/base/R-ex/plotformula.R
 lib/R/library/base/R-ex/plothistogram.R
 lib/R/library/base/R-ex/plotmath.R
+lib/R/library/base/R-ex/poly.R
 lib/R/library/base/R-ex/pmatch.R
 lib/R/library/base/R-ex/points.R
-lib/R/library/base/R-ex/poly.R
 lib/R/library/base/R-ex/polygon.R
 lib/R/library/base/R-ex/polyroot.R
 lib/R/library/base/R-ex/pos.to.env.R
@@ -1668,11 +1870,11 @@ lib/R/library/base/R-ex/proc.time.R
 lib/R/library/base/R-ex/prod.R
 lib/R/library/base/R-ex/proj.R
 lib/R/library/base/R-ex/prompt.R
+lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/prop.table.R
 lib/R/library/base/R-ex/pushBack.R
 lib/R/library/base/R-ex/putenv.R
 lib/R/library/base/R-ex/qqnorm.R
-lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/qraux.R
 lib/R/library/base/R-ex/quakes.R
 lib/R/library/base/R-ex/quantile.R
@@ -1680,15 +1882,18 @@ lib/R/library/base/R-ex/quit.R
 lib/R/library/base/R-ex/randu.R
 lib/R/library/base/R-ex/range.R
 lib/R/library/base/R-ex/rank.R
+lib/R/library/base/R-ex/read.ftable.R
 lib/R/library/base/R-ex/read.fwf.R
 lib/R/library/base/R-ex/read.socket.R
 lib/R/library/base/R-ex/readBin.R
 lib/R/library/base/R-ex/readLines.R
 lib/R/library/base/R-ex/readline.R
 lib/R/library/base/R-ex/rect.R
+lib/R/library/base/R-ex/reg.finalizer.R
 lib/R/library/base/R-ex/relevel.R
 lib/R/library/base/R-ex/rep.R
 lib/R/library/base/R-ex/replications.R
+lib/R/library/base/R-ex/reshape.R
 lib/R/library/base/R-ex/reshapeLong.R
 lib/R/library/base/R-ex/reshapeWide.R
 lib/R/library/base/R-ex/rev.R
@@ -1729,7 +1934,6 @@ lib/R/library/base/R-ex/step.R
 lib/R/library/base/R-ex/stop.R
 lib/R/library/base/R-ex/stopifnot.R
 lib/R/library/base/R-ex/str.R
-lib/R/library/base/R-ex/svd.R
 lib/R/library/base/R-ex/stripchart.R
 lib/R/library/base/R-ex/strptime.R
 lib/R/library/base/R-ex/strsplit.R
@@ -1740,20 +1944,24 @@ lib/R/library/base/R-ex/subset.R
 lib/R/library/base/R-ex/substitute.R
 lib/R/library/base/R-ex/substr.R
 lib/R/library/base/R-ex/summary.R
+lib/R/library/base/R-ex/summary.manova.R
 lib/R/library/base/R-ex/sunflowerplot.R
 lib/R/library/base/R-ex/sunspots.R
+lib/R/library/base/R-ex/svd.R
 lib/R/library/base/R-ex/sweep.R
 lib/R/library/base/R-ex/swiss.R
 lib/R/library/base/R-ex/switch.R
 lib/R/library/base/R-ex/symbols.R
 lib/R/library/base/R-ex/symnum.R
 lib/R/library/base/R-ex/sys.parent.R
-lib/R/library/base/R-ex/system.R
 lib/R/library/base/R-ex/system.file.R
 lib/R/library/base/R-ex/system.time.R
 lib/R/library/base/R-ex/table.R
 lib/R/library/base/R-ex/tabulate.R
 lib/R/library/base/R-ex/tapply.R
+lib/R/library/base/R-ex/taskCallback.R
+lib/R/library/base/R-ex/taskCallbackManager.R
+lib/R/library/base/R-ex/taskCallbackNames.R
 lib/R/library/base/R-ex/tempfile.R
 lib/R/library/base/R-ex/termplot.R
 lib/R/library/base/R-ex/text.R
@@ -1768,7 +1976,6 @@ lib/R/library/base/R-ex/trees.R
 lib/R/library/base/R-ex/try.R
 lib/R/library/base/R-ex/ts.R
 lib/R/library/base/R-ex/typeof.R
-lib/R/library/base/R-ex/undoc.R
 lib/R/library/base/R-ex/unique.R
 lib/R/library/base/R-ex/uniroot.R
 lib/R/library/base/R-ex/units.R
@@ -1781,26 +1988,30 @@ lib/R/library/base/R-ex/uspop.R
 lib/R/library/base/R-ex/vector.R
 lib/R/library/base/R-ex/volcano.R
 lib/R/library/base/R-ex/warning.R
-lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/warnings.R
 lib/R/library/base/R-ex/warpbreaks.R
 lib/R/library/base/R-ex/weekday.POSIXt.R
 lib/R/library/base/R-ex/weighted.mean.R
 lib/R/library/base/R-ex/weighted.residuals.R
+lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/which.min.R
 lib/R/library/base/R-ex/window.R
+lib/R/library/base/R-ex/with.R
 lib/R/library/base/R-ex/women.R
 lib/R/library/base/R-ex/write.R
-lib/R/library/base/R-ex/write.table.R
 lib/R/library/base/R-ex/xtabs.R
+lib/R/library/base/R-ex/write.table.R
 lib/R/library/base/R-ex/xy.coords.R
 lib/R/library/base/R-ex/xyz.coords.R
 lib/R/library/base/R-ex/zAlias.R
 lib/R/library/base/R-ex/zC.R
 lib/R/library/base/R-ex/zMachine.R
 lib/R/library/base/R-ex/zMethods.R
+lib/R/library/base/R-ex/zScript.R
 lib/R/library/base/R-ex/Rprof.R
 lib/R/library/base/R-ex/gnome.R
+lib/R/library/base/R-ex/nsl.R
+lib/R/library/base/R-ex/png.R
 lib/R/library/base/R-ex/AIC.R
 lib/R/library/base/latex/x11.tex
 lib/R/library/base/latex/AIC.logLik.tex
@@ -1858,7 +2069,6 @@ lib/R/library/base/latex/RdUtils.tex
 lib/R/library/base/latex/Recall.tex
 lib/R/library/base/latex/Rhome.tex
 lib/R/library/base/latex/Round.tex
-lib/R/library/base/latex/Script.tex
 lib/R/library/base/latex/SignRank.tex
 lib/R/library/base/latex/Special.tex
 lib/R/library/base/latex/Startup.tex
@@ -1904,6 +2114,7 @@ lib/R/library/base/latex/args.tex
 lib/R/library/base/latex/array.tex
 lib/R/library/base/latex/arrows.tex
 lib/R/library/base/latex/as.POSIXlt.tex
+lib/R/library/base/latex/as.environment.tex
 lib/R/library/base/latex/as.function.tex
 lib/R/library/base/latex/assign.tex
 lib/R/library/base/latex/assocplot.tex
@@ -1914,10 +2125,12 @@ lib/R/library/base/latex/attr.tex
 lib/R/library/base/latex/attributes.tex
 lib/R/library/base/latex/autoload.tex
 lib/R/library/base/latex/ave.tex
-lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/axis.tex
+lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/backsolve.tex
+lib/R/library/base/latex/bandwidth.tex
 lib/R/library/base/latex/barplot.tex
+lib/R/library/base/latex/bindenv.tex
 lib/R/library/base/latex/birthday.tex
 lib/R/library/base/latex/body.tex
 lib/R/library/base/latex/box.tex
@@ -1936,21 +2149,19 @@ lib/R/library/base/latex/cars.tex
 lib/R/library/base/latex/case.names.tex
 lib/R/library/base/latex/cat.tex
 lib/R/library/base/latex/cbind.tex
+lib/R/library/base/latex/co2.tex
 lib/R/library/base/latex/char.expand.tex
 lib/R/library/base/latex/character.tex
-lib/R/library/base/latex/chartr.tex
 lib/R/library/base/latex/charmatch.tex
+lib/R/library/base/latex/chartr.tex
 lib/R/library/base/latex/check.options.tex
-lib/R/library/base/latex/checkFF.tex
 lib/R/library/base/latex/chickwts.tex
 lib/R/library/base/latex/chol.tex
 lib/R/library/base/latex/chol2inv.tex
 lib/R/library/base/latex/chull.tex
 lib/R/library/base/latex/class.tex
 lib/R/library/base/latex/close.socket.tex
-lib/R/library/base/latex/co2.tex
 lib/R/library/base/latex/codes.tex
-lib/R/library/base/latex/codoc.tex
 lib/R/library/base/latex/coefficients.tex
 lib/R/library/base/latex/col.tex
 lib/R/library/base/latex/col2rgb.tex
@@ -1983,8 +2194,8 @@ lib/R/library/base/latex/data.class.tex
 lib/R/library/base/latex/data.frame.tex
 lib/R/library/base/latex/data.matrix.tex
 lib/R/library/base/latex/dataentry.tex
-lib/R/library/base/latex/date.tex
 lib/R/library/base/latex/dcf.tex
+lib/R/library/base/latex/date.tex
 lib/R/library/base/latex/debug.tex
 lib/R/library/base/latex/debugger.tex
 lib/R/library/base/latex/delay.tex
@@ -2030,13 +2241,13 @@ lib/R/library/base/latex/example.tex
 lib/R/library/base/latex/exists.tex
 lib/R/library/base/latex/expand.grid.tex
 lib/R/library/base/latex/expand.model.frame.tex
+lib/R/library/base/latex/factor.tex
 lib/R/library/base/latex/expression.tex
-lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/extractAIC.tex
-lib/R/library/base/latex/factor.tex
 lib/R/library/base/latex/factor.scope.tex
 lib/R/library/base/latex/faithful.tex
 lib/R/library/base/latex/family.tex
+lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/file.access.tex
 lib/R/library/base/latex/file.choose.tex
 lib/R/library/base/latex/file.info.tex
@@ -2053,22 +2264,24 @@ lib/R/library/base/latex/format.info.tex
 lib/R/library/base/latex/formatDL.tex
 lib/R/library/base/latex/formatc.tex
 lib/R/library/base/latex/formula.tex
+lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/fourfoldplot.tex
 lib/R/library/base/latex/frame.tex
 lib/R/library/base/latex/freeny.tex
 lib/R/library/base/latex/ftable.tex
 lib/R/library/base/latex/ftable.formula.tex
 lib/R/library/base/latex/function.tex
-lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/gc.time.tex
 lib/R/library/base/latex/gctorture.tex
 lib/R/library/base/latex/get.tex
+lib/R/library/base/latex/getNativeSymbolInfo.tex
 lib/R/library/base/latex/getenv.tex
 lib/R/library/base/latex/getwd.tex
 lib/R/library/base/latex/gl.tex
 lib/R/library/base/latex/glm.tex
 lib/R/library/base/latex/glm.control.tex
 lib/R/library/base/latex/glm.summaries.tex
+lib/R/library/base/latex/glm.summary.tex
 lib/R/library/base/latex/gray.tex
 lib/R/library/base/latex/grep.tex
 lib/R/library/base/latex/grid.tex
@@ -2077,6 +2290,7 @@ lib/R/library/base/latex/help.search.tex
 lib/R/library/base/latex/help.start.tex
 lib/R/library/base/latex/hist.tex
 lib/R/library/base/latex/hsv.tex
+lib/R/library/base/latex/identical.tex
 lib/R/library/base/latex/identify.tex
 lib/R/library/base/latex/ifelse.tex
 lib/R/library/base/latex/image.tex
@@ -2095,11 +2309,10 @@ lib/R/library/base/latex/is.finite.tex
 lib/R/library/base/latex/is.function.tex
 lib/R/library/base/latex/is.language.tex
 lib/R/library/base/latex/is.object.tex
+lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/is.recursive.tex
 lib/R/library/base/latex/is.single.tex
-lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/islands.tex
-lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/jitter.tex
 lib/R/library/base/latex/kappa.tex
 lib/R/library/base/latex/kronecker.tex
@@ -2116,14 +2329,17 @@ lib/R/library/base/latex/license.tex
 lib/R/library/base/latex/lines.tex
 lib/R/library/base/latex/list.tex
 lib/R/library/base/latex/list.files.tex
+lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/lm.influence.tex
 lib/R/library/base/latex/lm.summaries.tex
+lib/R/library/base/latex/lm.summary.tex
 lib/R/library/base/latex/lmfit.tex
 lib/R/library/base/latex/load.tex
 lib/R/library/base/latex/localeconv.tex
 lib/R/library/base/latex/locales.tex
 lib/R/library/base/latex/locator.tex
 lib/R/library/base/latex/logLik.tex
+lib/R/library/base/latex/logLik.glm.tex
 lib/R/library/base/latex/logLik.lm.tex
 lib/R/library/base/latex/logical.tex
 lib/R/library/base/latex/loglin.tex
@@ -2163,8 +2379,8 @@ lib/R/library/base/latex/mode.tex
 lib/R/library/base/latex/model.extract.tex
 lib/R/library/base/latex/model.frame.tex
 lib/R/library/base/latex/model.matrix.tex
-lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/morley.tex
+lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/mosaicplot.tex
 lib/R/library/base/latex/mtcars.tex
 lib/R/library/base/latex/mtext.tex
@@ -2177,6 +2393,7 @@ lib/R/library/base/latex/names.tex
 lib/R/library/base/latex/naprint.tex
 lib/R/library/base/latex/nargs.tex
 lib/R/library/base/latex/nchar.tex
+lib/R/library/base/latex/nclass.tex
 lib/R/library/base/latex/nextn.tex
 lib/R/library/base/latex/nhtemp.tex
 lib/R/library/base/latex/nlevels.tex
@@ -2187,6 +2404,7 @@ lib/R/library/base/latex/nrow.tex
 lib/R/library/base/latex/numeric.tex
 lib/R/library/base/latex/object.size.tex
 lib/R/library/base/latex/octmode.tex
+lib/R/library/base/latex/par.tex
 lib/R/library/base/latex/offset.tex
 lib/R/library/base/latex/on.exit.tex
 lib/R/library/base/latex/optim.tex
@@ -2198,13 +2416,13 @@ lib/R/library/base/latex/p.adjust.tex
 lib/R/library/base/latex/package.contents.tex
 lib/R/library/base/latex/package.dependencies.tex
 lib/R/library/base/latex/package.skeleton.tex
+lib/R/library/base/latex/packageStatus.tex
 lib/R/library/base/latex/page.tex
 lib/R/library/base/latex/pairs.tex
 lib/R/library/base/latex/pairs.formula.tex
 lib/R/library/base/latex/palette.tex
 lib/R/library/base/latex/palettes.tex
 lib/R/library/base/latex/panel.smooth.tex
-lib/R/library/base/latex/par.tex
 lib/R/library/base/latex/parse.tex
 lib/R/library/base/latex/paste.tex
 lib/R/library/base/latex/pdf.tex
@@ -2231,6 +2449,7 @@ lib/R/library/base/latex/polygon.tex
 lib/R/library/base/latex/polyroot.tex
 lib/R/library/base/latex/pos.to.env.tex
 lib/R/library/base/latex/postscript.tex
+lib/R/library/base/latex/qr.tex
 lib/R/library/base/latex/power.tex
 lib/R/library/base/latex/ppoints.tex
 lib/R/library/base/latex/precip.tex
@@ -2243,6 +2462,7 @@ lib/R/library/base/latex/pressure.tex
 lib/R/library/base/latex/pretty.tex
 lib/R/library/base/latex/print.tex
 lib/R/library/base/latex/print.coefmat.tex
+lib/R/library/base/latex/print.dataframe.tex
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+lib/R/library/tcltk/R-ex/TclInterface.R
+lib/R/library/tcltk/R-ex/TkCommands.R
+lib/R/library/tcltk/R-ex/TkWidgetcmds.R
+lib/R/library/tcltk/R-ex/TkWidgets.R
+lib/R/library/tcltk/R-ex/tkpager.R
+lib/R/library/tcltk/latex/TclInterface.tex
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+lib/R/library/tcltk/latex/TkWidgetcmds.tex
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+lib/R/library/tcltk/help/TclInterface
+lib/R/library/tcltk/help/TkCommands
+lib/R/library/tcltk/help/TkWidgetcmds
+lib/R/library/tcltk/help/TkWidgets
+lib/R/library/tcltk/help/tkpager
+lib/R/library/tcltk/demo/00Index
+lib/R/library/tcltk/demo/tkcanvas.R
+lib/R/library/tcltk/demo/tkdensity.R
+lib/R/library/tcltk/demo/tkfaq.R
+lib/R/library/tcltk/demo/tkfilefind.R
+lib/R/library/tcltk/demo/tkttest.R
+lib/R/library/tcltk/exec/widget.tcl
+lib/R/library/tcltk/exec/pkgIndex.tcl
+lib/R/library/tcltk/exec/util-dump.tcl
+lib/R/library/tcltk/exec/util-expand.tcl
+lib/R/library/tcltk/exec/util-number.tcl
+lib/R/library/tcltk/exec/util-string.tcl
+lib/R/library/tcltk/exec/util-tk.tcl
+lib/R/library/tcltk/exec/util.tcl
+lib/R/library/tcltk/exec/hierarchy.tcl
+lib/R/library/tcltk/R/tcltk
+lib/R/library/tcltk/man/tcltk.Rd
+lib/R/library/tcltk/DESCRIPTION
+lib/R/library/tcltk/TITLE
+lib/R/library/tcltk/INDEX
+lib/R/library/tcltk/CONTENTS
+lib/R/library/tools/R/tools
+lib/R/library/tools/R-ex/checkFF.R
+lib/R/library/tools/R-ex/undoc.R
+lib/R/library/tools/latex/QA.tex
+lib/R/library/tools/latex/checkFF.tex
+lib/R/library/tools/latex/checkTnF.tex
+lib/R/library/tools/latex/codoc.tex
+lib/R/library/tools/latex/tools-internal.tex
+lib/R/library/tools/latex/undoc.tex
+lib/R/library/tools/html/checkTnF.html
+lib/R/library/tools/html/QA.html
+lib/R/library/tools/html/checkFF.html
+lib/R/library/tools/html/00Index.html
+lib/R/library/tools/html/codoc.html
+lib/R/library/tools/html/tools-internal.html
+lib/R/library/tools/html/undoc.html
+lib/R/library/tools/man/tools.Rd
+lib/R/library/tools/help/checkTnF
+lib/R/library/tools/help/QA
+lib/R/library/tools/help/checkFF
+lib/R/library/tools/help/AnIndex
+lib/R/library/tools/help/codoc
+lib/R/library/tools/help/tools-internal
+lib/R/library/tools/help/undoc
+lib/R/library/tools/DESCRIPTION
+lib/R/library/tools/TITLE
+lib/R/library/tools/INDEX
+lib/R/library/tools/CONTENTS
+lib/R/library/ts/html/ts.union.html
+lib/R/library/ts/html/BJsales.html
+lib/R/library/ts/html/EuStockMarkets.html
+lib/R/library/ts/html/LakeHuron.html
+lib/R/library/ts/html/UKDriverDeaths.html
+lib/R/library/ts/html/UKLungDeaths.html
+lib/R/library/ts/html/USAccDeaths.html
+lib/R/library/ts/html/acf.html
+lib/R/library/ts/html/ar.html
+lib/R/library/ts/html/ar.ols.html
+lib/R/library/ts/html/arima0.html
+lib/R/library/ts/html/austres.html
+lib/R/library/ts/html/beavers.html
+lib/R/library/ts/html/box.test.html
+lib/R/library/ts/html/cpgram.html
+lib/R/library/ts/html/diffinv.html
+lib/R/library/ts/html/embed.html
+lib/R/library/ts/html/filter.html
+lib/R/library/ts/html/kernapply.html
+lib/R/library/ts/html/kernel.html
+lib/R/library/ts/html/lag.html
+lib/R/library/ts/html/lag.plot.html
+lib/R/library/ts/html/lh.html
+lib/R/library/ts/html/lynx.html
+lib/R/library/ts/html/na.contiguous.html
+lib/R/library/ts/html/nottem.html
+lib/R/library/ts/html/plot.acf.html
+lib/R/library/ts/html/plot.spec.html
+lib/R/library/ts/html/pp.test.html
+lib/R/library/ts/html/spec.ar.html
+lib/R/library/ts/html/spec.pgram.html
+lib/R/library/ts/html/spec.taper.html
+lib/R/library/ts/html/spectrum.html
+lib/R/library/ts/html/stl.html
+lib/R/library/ts/html/stlmethods.html
+lib/R/library/ts/html/sunspot.html
+lib/R/library/ts/html/toeplitz.html
+lib/R/library/ts/html/treering.html
+lib/R/library/ts/html/ts-internal.html
+lib/R/library/ts/html/ts.plot.html
+lib/R/library/ts/html/00Index.html
 lib/R/library/ts/R-ex/ts.union.R
 lib/R/library/ts/R-ex/acf.R
 lib/R/library/ts/R-ex/ar.R
@@ -3204,7 +3575,7 @@ lib/R/library/ts/R-ex/kernapply.R
 lib/R/library/ts/R-ex/kernel.R
 lib/R/library/ts/R-ex/lag.R
 lib/R/library/ts/R-ex/lag.plot.R
-lib/R/library/ts/R-ex/na.omit.ts.R
+lib/R/library/ts/R-ex/na.contiguous.R
 lib/R/library/ts/R-ex/plot.acf.R
 lib/R/library/ts/R-ex/pp.test.R
 lib/R/library/ts/R-ex/spec.ar.R
@@ -3229,7 +3600,6 @@ lib/R/library/ts/latex/austres.tex
 lib/R/library/ts/latex/beavers.tex
 lib/R/library/ts/latex/box.test.tex
 lib/R/library/ts/latex/cpgram.tex
-lib/R/library/ts/latex/diff.ts.tex
 lib/R/library/ts/latex/diffinv.tex
 lib/R/library/ts/latex/embed.tex
 lib/R/library/ts/latex/filter.tex
@@ -3238,8 +3608,9 @@ lib/R/library/ts/latex/kernel.tex
 lib/R/library/ts/latex/lag.tex
 lib/R/library/ts/latex/lag.plot.tex
 lib/R/library/ts/latex/lh.tex
+lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/lynx.tex
-lib/R/library/ts/latex/na.omit.ts.tex
+lib/R/library/ts/latex/na.contiguous.tex
 lib/R/library/ts/latex/nottem.tex
 lib/R/library/ts/latex/plot.acf.tex
 lib/R/library/ts/latex/plot.spec.tex
@@ -3248,7 +3619,6 @@ lib/R/library/ts/latex/spec.ar.tex
 lib/R/library/ts/latex/spec.pgram.tex
 lib/R/library/ts/latex/spec.taper.tex
 lib/R/library/ts/latex/spectrum.tex
-lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/stlmethods.tex
 lib/R/library/ts/latex/sunspot.tex
 lib/R/library/ts/latex/toeplitz.tex
@@ -3256,48 +3626,7 @@ lib/R/library/ts/latex/treering.tex
 lib/R/library/ts/latex/ts-internal.tex
 lib/R/library/ts/latex/ts.plot.tex
 lib/R/library/ts/latex/BJsales.tex
-lib/R/library/ts/html/ts.union.html
-lib/R/library/ts/html/BJsales.html
-lib/R/library/ts/html/EuStockMarkets.html
-lib/R/library/ts/html/LakeHuron.html
-lib/R/library/ts/html/UKDriverDeaths.html
-lib/R/library/ts/html/UKLungDeaths.html
-lib/R/library/ts/html/USAccDeaths.html
-lib/R/library/ts/html/acf.html
-lib/R/library/ts/html/ar.html
-lib/R/library/ts/html/ar.ols.html
-lib/R/library/ts/html/arima0.html
-lib/R/library/ts/html/austres.html
-lib/R/library/ts/html/beavers.html
-lib/R/library/ts/html/box.test.html
-lib/R/library/ts/html/cpgram.html
-lib/R/library/ts/html/diff.ts.html
-lib/R/library/ts/html/diffinv.html
-lib/R/library/ts/html/embed.html
-lib/R/library/ts/html/filter.html
-lib/R/library/ts/html/kernapply.html
-lib/R/library/ts/html/kernel.html
-lib/R/library/ts/html/lag.html
-lib/R/library/ts/html/lag.plot.html
-lib/R/library/ts/html/lh.html
-lib/R/library/ts/html/lynx.html
-lib/R/library/ts/html/na.omit.ts.html
-lib/R/library/ts/html/nottem.html
-lib/R/library/ts/html/plot.acf.html
-lib/R/library/ts/html/plot.spec.html
-lib/R/library/ts/html/pp.test.html
-lib/R/library/ts/html/spec.ar.html
-lib/R/library/ts/html/spec.pgram.html
-lib/R/library/ts/html/spec.taper.html
-lib/R/library/ts/html/spectrum.html
-lib/R/library/ts/html/stl.html
-lib/R/library/ts/html/stlmethods.html
-lib/R/library/ts/html/sunspot.html
-lib/R/library/ts/html/toeplitz.html
-lib/R/library/ts/html/treering.html
-lib/R/library/ts/html/ts-internal.html
-lib/R/library/ts/html/ts.plot.html
-lib/R/library/ts/html/00Index.html
+lib/R/library/ts/libs/ts.so
 lib/R/library/ts/help/ts.union
 lib/R/library/ts/help/BJsales
 lib/R/library/ts/help/EuStockMarkets
@@ -3313,7 +3642,6 @@ lib/R/library/ts/help/austres
 lib/R/library/ts/help/beavers
 lib/R/library/ts/help/box.test
 lib/R/library/ts/help/cpgram
-lib/R/library/ts/help/diff.ts
 lib/R/library/ts/help/diffinv
 lib/R/library/ts/help/embed
 lib/R/library/ts/help/filter
@@ -3323,16 +3651,16 @@ lib/R/library/ts/help/lag
 lib/R/library/ts/help/lag.plot
 lib/R/library/ts/help/lh
 lib/R/library/ts/help/lynx
-lib/R/library/ts/help/na.omit.ts
+lib/R/library/ts/help/na.contiguous
 lib/R/library/ts/help/nottem
 lib/R/library/ts/help/plot.acf
-lib/R/library/ts/help/plot.spec
+lib/R/library/ts/help/stl
 lib/R/library/ts/help/pp.test
+lib/R/library/ts/help/plot.spec
 lib/R/library/ts/help/spec.ar
 lib/R/library/ts/help/spec.pgram
 lib/R/library/ts/help/spec.taper
 lib/R/library/ts/help/spectrum
-lib/R/library/ts/help/stl
 lib/R/library/ts/help/stlmethods
 lib/R/library/ts/help/sunspot
 lib/R/library/ts/help/toeplitz
@@ -3354,54 +3682,13 @@ lib/R/library/ts/data/lynx.R
 lib/R/library/ts/data/nottem.R
 lib/R/library/ts/data/sunspot.R
 lib/R/library/ts/data/00Index
-lib/R/library/ts/libs/ts.so
+lib/R/library/ts/R/ts
+lib/R/library/ts/man/ts.Rd
 lib/R/library/ts/DESCRIPTION
 lib/R/library/ts/TITLE
 lib/R/library/ts/SOURCES
 lib/R/library/ts/INDEX
 lib/R/library/ts/CONTENTS
-lib/R/library/tcltk/help/AnIndex
-lib/R/library/tcltk/help/TclInterface
-lib/R/library/tcltk/help/TkCommands
-lib/R/library/tcltk/help/TkWidgetcmds
-lib/R/library/tcltk/help/TkWidgets
-lib/R/library/tcltk/help/tkpager
-lib/R/library/tcltk/R-ex/TclInterface.R
-lib/R/library/tcltk/R-ex/TkCommands.R
-lib/R/library/tcltk/R-ex/TkWidgetcmds.R
-lib/R/library/tcltk/R-ex/TkWidgets.R
-lib/R/library/tcltk/R-ex/tkpager.R
-lib/R/library/tcltk/latex/TclInterface.tex
-lib/R/library/tcltk/latex/TkCommands.tex
-lib/R/library/tcltk/latex/TkWidgetcmds.tex
-lib/R/library/tcltk/latex/TkWidgets.tex
-lib/R/library/tcltk/latex/tkpager.tex
-lib/R/library/tcltk/html/00Index.html
-lib/R/library/tcltk/html/TclInterface.html
-lib/R/library/tcltk/html/TkCommands.html
-lib/R/library/tcltk/html/TkWidgetcmds.html
-lib/R/library/tcltk/html/TkWidgets.html
-lib/R/library/tcltk/html/tkpager.html
-lib/R/library/tcltk/demo/00Index
-lib/R/library/tcltk/demo/tkcanvas.R
-lib/R/library/tcltk/demo/tkdensity.R
-lib/R/library/tcltk/demo/tkfaq.R
-lib/R/library/tcltk/demo/tkfilefind.R
-lib/R/library/tcltk/demo/tkttest.R
-lib/R/library/tcltk/R/tcltk
-lib/R/library/tcltk/exec/widget.tcl
-lib/R/library/tcltk/exec/pkgIndex.tcl
-lib/R/library/tcltk/exec/util-dump.tcl
-lib/R/library/tcltk/exec/util-expand.tcl
-lib/R/library/tcltk/exec/util-number.tcl
-lib/R/library/tcltk/exec/util-string.tcl
-lib/R/library/tcltk/exec/util-tk.tcl
-lib/R/library/tcltk/exec/util.tcl
-lib/R/library/tcltk/exec/hierarchy.tcl
-lib/R/library/tcltk/DESCRIPTION
-lib/R/library/tcltk/TITLE
-lib/R/library/tcltk/INDEX
-lib/R/library/tcltk/CONTENTS
 lib/R/library/R.css
 lib/R/AUTHORS
 lib/R/COPYING
@@ -3411,88 +3698,114 @@ lib/R/FAQ
 lib/R/NEWS
 lib/R/RESOURCES
 lib/R/THANKS
-@dirrm lib/R/library/tcltk/exec
-@dirrm lib/R/library/tcltk/R
-@dirrm lib/R/library/tcltk/demo
-@dirrm lib/R/library/tcltk/html
-@dirrm lib/R/library/tcltk/latex
-@dirrm lib/R/library/tcltk/R-ex
-@dirrm lib/R/library/tcltk/help
-@dirrm lib/R/library/tcltk
-@dirrm lib/R/library/ts/libs
+@dirrm lib/R/library/ts/man
+@dirrm lib/R/library/ts/R
 @dirrm lib/R/library/ts/data
 @dirrm lib/R/library/ts/help
-@dirrm lib/R/library/ts/html
+@dirrm lib/R/library/ts/libs
 @dirrm lib/R/library/ts/latex
 @dirrm lib/R/library/ts/R-ex
-@dirrm lib/R/library/ts/R
+@dirrm lib/R/library/ts/html
 @dirrm lib/R/library/ts
+@dirrm lib/R/library/tools/help
+@dirrm lib/R/library/tools/man
+@dirrm lib/R/library/tools/html
+@dirrm lib/R/library/tools/latex
+@dirrm lib/R/library/tools/R-ex
+@dirrm lib/R/library/tools/R
+@dirrm lib/R/library/tools
+@dirrm lib/R/library/tcltk/man
+@dirrm lib/R/library/tcltk/R
+@dirrm lib/R/library/tcltk/exec
+@dirrm lib/R/library/tcltk/demo
+@dirrm lib/R/library/tcltk/help
+@dirrm lib/R/library/tcltk/latex
+@dirrm lib/R/library/tcltk/R-ex
+@dirrm lib/R/library/tcltk/html
+@dirrm lib/R/library/tcltk
 @dirrm lib/R/library/stepfun/help
+@dirrm lib/R/library/stepfun/man
 @dirrm lib/R/library/stepfun/html
 @dirrm lib/R/library/stepfun/latex
 @dirrm lib/R/library/stepfun/R-ex
 @dirrm lib/R/library/stepfun/R
 @dirrm lib/R/library/stepfun
-@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines/libs
+@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/man
 @dirrm lib/R/library/splines/html
 @dirrm lib/R/library/splines/latex
 @dirrm lib/R/library/splines/R-ex
-@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines
-@dirrm lib/R/library/base/demo
+@dirrm lib/R/library/base/man
 @dirrm lib/R/library/base/R
+@dirrm lib/R/library/base/demo
 @dirrm lib/R/library/base/data
-@dirrm lib/R/library/base/html
+@dirrm lib/R/library/base/help
 @dirrm lib/R/library/base/latex
 @dirrm lib/R/library/base/R-ex
-@dirrm lib/R/library/base/help
+@dirrm lib/R/library/base/html
 @dirrm lib/R/library/base
 @dirrm lib/R/library/mva/libs
 @dirrm lib/R/library/mva/R
+@dirrm lib/R/library/mva/man
 @dirrm lib/R/library/mva/data
-@dirrm lib/R/library/mva/html
+@dirrm lib/R/library/mva/help
 @dirrm lib/R/library/mva/latex
 @dirrm lib/R/library/mva/R-ex
-@dirrm lib/R/library/mva/help
+@dirrm lib/R/library/mva/html
 @dirrm lib/R/library/mva
-@dirrm lib/R/library/modreg/libs
+@dirrm lib/R/library/modreg/man
+@dirrm lib/R/library/modreg/R
 @dirrm lib/R/library/modreg/data
 @dirrm lib/R/library/modreg/help
-@dirrm lib/R/library/modreg/html
+@dirrm lib/R/library/modreg/libs
 @dirrm lib/R/library/modreg/latex
 @dirrm lib/R/library/modreg/R-ex
-@dirrm lib/R/library/modreg/R
+@dirrm lib/R/library/modreg/html
 @dirrm lib/R/library/modreg
-@dirrm lib/R/library/lqs/help
+@dirrm lib/R/library/methods/libs
+@dirrm lib/R/library/methods/R
+@dirrm lib/R/library/methods/man
+@dirrm lib/R/library/methods/html
+@dirrm lib/R/library/methods/latex
+@dirrm lib/R/library/methods/R-ex
+@dirrm lib/R/library/methods/help
+@dirrm lib/R/library/methods
 @dirrm lib/R/library/lqs/libs
+@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/man
 @dirrm lib/R/library/lqs/html
 @dirrm lib/R/library/lqs/latex
 @dirrm lib/R/library/lqs/R-ex
-@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/help
 @dirrm lib/R/library/lqs
 @dirrm lib/R/library/eda/libs
 @dirrm lib/R/library/eda/R
+@dirrm lib/R/library/eda/man
 @dirrm lib/R/library/eda/demo
-@dirrm lib/R/library/eda/html
+@dirrm lib/R/library/eda/help
 @dirrm lib/R/library/eda/latex
 @dirrm lib/R/library/eda/R-ex
-@dirrm lib/R/library/eda/help
+@dirrm lib/R/library/eda/html
 @dirrm lib/R/library/eda
-@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest/libs
+@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/man
 @dirrm lib/R/library/ctest/html
 @dirrm lib/R/library/ctest/latex
 @dirrm lib/R/library/ctest/R-ex
-@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest
 @dirrm lib/R/library/nls/libs
 @dirrm lib/R/library/nls/R
+@dirrm lib/R/library/nls/man
 @dirrm lib/R/library/nls/data
-@dirrm lib/R/library/nls/html
+@dirrm lib/R/library/nls/help
 @dirrm lib/R/library/nls/latex
 @dirrm lib/R/library/nls/R-ex
-@dirrm lib/R/library/nls/help
+@dirrm lib/R/library/nls/html
 @dirrm lib/R/library/nls
 @dirrm lib/R/library
 @dirrm lib/R/modules
@@ -3505,6 +3818,7 @@ lib/R/THANKS
 @dirrm lib/R/share/perl/R
 @dirrm lib/R/share/perl
 @dirrm lib/R/share/make
+@dirrm lib/R/share/R
 @dirrm lib/R/share
 @dirrm lib/R/etc
 @dirrm lib/R/doc/manual
diff --git a/math/R/Makefile b/math/R/Makefile
index 100b753fbad8..9c2240c055a5 100644
--- a/math/R/Makefile
+++ b/math/R/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	R
-PORTVERSION=	1.3.1
+PORTVERSION=	1.4.1
 CATEGORIES=	math
 MASTER_SITES=	http://cran.r-project.org/src/base/ \
 		ftp://cran.r-project.org/pub/R/src/base/ \
diff --git a/math/R/distinfo b/math/R/distinfo
index 3e05041657ad..d1f62422d9ed 100644
--- a/math/R/distinfo
+++ b/math/R/distinfo
@@ -1 +1 @@
-MD5 (R-1.3.1.tgz) = 08ede7a15abea4d8efdb74425cbed706
+MD5 (R-1.4.1.tgz) = bf482598325347c7997477eb778552e8
diff --git a/math/R/pkg-plist b/math/R/pkg-plist
index 878faa4134d5..4ece4dd87dcb 100644
--- a/math/R/pkg-plist
+++ b/math/R/pkg-plist
@@ -32,6 +32,44 @@ lib/R/afm/tibi____.afm
 lib/R/afm/tii_____.afm
 lib/R/afm/tir_____.afm
 lib/R/afm/sy______.afm
+lib/R/afm/a010013l.afm
+lib/R/afm/a010015l.afm
+lib/R/afm/a010033l.afm
+lib/R/afm/a010035l.afm
+lib/R/afm/b018012l.afm
+lib/R/afm/b018015l.afm
+lib/R/afm/b018032l.afm
+lib/R/afm/b018035l.afm
+lib/R/afm/n022003l.afm
+lib/R/afm/n022004l.afm
+lib/R/afm/n022023l.afm
+lib/R/afm/n022024l.afm
+lib/R/afm/n019003l.afm
+lib/R/afm/n019004l.afm
+lib/R/afm/n019023l.afm
+lib/R/afm/n019024l.afm
+lib/R/afm/n019043l.afm
+lib/R/afm/n019044l.afm
+lib/R/afm/n019063l.afm
+lib/R/afm/n019064l.afm
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 lib/R/library/base/R-ex/assocplot.R
@@ -1375,7 +1572,9 @@ lib/R/library/base/R-ex/ave.R
 lib/R/library/base/R-ex/axis.POSIXct.R
 lib/R/library/base/R-ex/axis.R
 lib/R/library/base/R-ex/backsolve.R
+lib/R/library/base/R-ex/bandwidth.R
 lib/R/library/base/R-ex/barplot.R
+lib/R/library/base/R-ex/bindenv.R
 lib/R/library/base/R-ex/birthday.R
 lib/R/library/base/R-ex/body.R
 lib/R/library/base/R-ex/box.R
@@ -1396,7 +1595,6 @@ lib/R/library/base/R-ex/character.R
 lib/R/library/base/R-ex/charmatch.R
 lib/R/library/base/R-ex/chartr.R
 lib/R/library/base/R-ex/check.options.R
-lib/R/library/base/R-ex/checkFF.R
 lib/R/library/base/R-ex/chickwts.R
 lib/R/library/base/R-ex/chol.R
 lib/R/library/base/R-ex/chol2inv.R
@@ -1421,7 +1619,6 @@ lib/R/library/base/R-ex/contrasts.R
 lib/R/library/base/R-ex/converters.R
 lib/R/library/base/R-ex/convolve.R
 lib/R/library/base/R-ex/coplot.R
-lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/cor.R
 lib/R/library/base/R-ex/count.fields.R
 lib/R/library/base/R-ex/crossprod.R
@@ -1502,12 +1699,13 @@ lib/R/library/base/R-ex/function.R
 lib/R/library/base/R-ex/gc.R
 lib/R/library/base/R-ex/gc.time.R
 lib/R/library/base/R-ex/get.R
+lib/R/library/base/R-ex/getNativeSymbolInfo.R
 lib/R/library/base/R-ex/getenv.R
 lib/R/library/base/R-ex/getwd.R
 lib/R/library/base/R-ex/gl.R
 lib/R/library/base/R-ex/glm.R
 lib/R/library/base/R-ex/glm.control.R
-lib/R/library/base/R-ex/glm.summaries.R
+lib/R/library/base/R-ex/glm.summary.R
 lib/R/library/base/R-ex/gray.R
 lib/R/library/base/R-ex/grep.R
 lib/R/library/base/R-ex/grid.R
@@ -1516,15 +1714,17 @@ lib/R/library/base/R-ex/help.search.R
 lib/R/library/base/R-ex/help.start.R
 lib/R/library/base/R-ex/hist.R
 lib/R/library/base/R-ex/hsv.R
+lib/R/library/base/R-ex/identical.R
 lib/R/library/base/R-ex/ifelse.R
 lib/R/library/base/R-ex/image.R
 lib/R/library/base/R-ex/infert.R
 lib/R/library/base/R-ex/influence.measures.R
+lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/integrate.R
 lib/R/library/base/R-ex/interaction.R
 lib/R/library/base/R-ex/interaction.plot.R
-lib/R/library/base/R-ex/invisible.R
 lib/R/library/base/R-ex/interactive.R
+lib/R/library/base/R-ex/invisible.R
 lib/R/library/base/R-ex/iris.R
 lib/R/library/base/R-ex/is.empty.R
 lib/R/library/base/R-ex/is.finite.R
@@ -1549,11 +1749,13 @@ lib/R/library/base/R-ex/list.files.R
 lib/R/library/base/R-ex/lm.R
 lib/R/library/base/R-ex/lm.influence.R
 lib/R/library/base/R-ex/lm.summaries.R
+lib/R/library/base/R-ex/lm.summary.R
 lib/R/library/base/R-ex/lmfit.R
 lib/R/library/base/R-ex/load.R
 lib/R/library/base/R-ex/localeconv.R
 lib/R/library/base/R-ex/locales.R
 lib/R/library/base/R-ex/logLik.R
+lib/R/library/base/R-ex/logLik.glm.R
 lib/R/library/base/R-ex/logLik.lm.R
 lib/R/library/base/R-ex/loglin.R
 lib/R/library/base/R-ex/longley.R
@@ -1568,7 +1770,6 @@ lib/R/library/base/R-ex/mahalanobis.R
 lib/R/library/base/R-ex/make.link.R
 lib/R/library/base/R-ex/make.names.R
 lib/R/library/base/R-ex/make.socket.R
-lib/R/library/base/R-ex/manova.R
 lib/R/library/base/R-ex/margin.table.R
 lib/R/library/base/R-ex/mat.or.vec.R
 lib/R/library/base/R-ex/match.R
@@ -1619,6 +1820,7 @@ lib/R/library/base/R-ex/order.R
 lib/R/library/base/R-ex/outer.R
 lib/R/library/base/R-ex/p.adjust.R
 lib/R/library/base/R-ex/package.contents.R
+lib/R/library/base/R-ex/packageStatus.R
 lib/R/library/base/R-ex/package.skeleton.R
 lib/R/library/base/R-ex/pairs.R
 lib/R/library/base/R-ex/pairs.formula.R
@@ -1643,9 +1845,9 @@ lib/R/library/base/R-ex/plotfactor.R
 lib/R/library/base/R-ex/plotformula.R
 lib/R/library/base/R-ex/plothistogram.R
 lib/R/library/base/R-ex/plotmath.R
+lib/R/library/base/R-ex/poly.R
 lib/R/library/base/R-ex/pmatch.R
 lib/R/library/base/R-ex/points.R
-lib/R/library/base/R-ex/poly.R
 lib/R/library/base/R-ex/polygon.R
 lib/R/library/base/R-ex/polyroot.R
 lib/R/library/base/R-ex/pos.to.env.R
@@ -1668,11 +1870,11 @@ lib/R/library/base/R-ex/proc.time.R
 lib/R/library/base/R-ex/prod.R
 lib/R/library/base/R-ex/proj.R
 lib/R/library/base/R-ex/prompt.R
+lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/prop.table.R
 lib/R/library/base/R-ex/pushBack.R
 lib/R/library/base/R-ex/putenv.R
 lib/R/library/base/R-ex/qqnorm.R
-lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/qraux.R
 lib/R/library/base/R-ex/quakes.R
 lib/R/library/base/R-ex/quantile.R
@@ -1680,15 +1882,18 @@ lib/R/library/base/R-ex/quit.R
 lib/R/library/base/R-ex/randu.R
 lib/R/library/base/R-ex/range.R
 lib/R/library/base/R-ex/rank.R
+lib/R/library/base/R-ex/read.ftable.R
 lib/R/library/base/R-ex/read.fwf.R
 lib/R/library/base/R-ex/read.socket.R
 lib/R/library/base/R-ex/readBin.R
 lib/R/library/base/R-ex/readLines.R
 lib/R/library/base/R-ex/readline.R
 lib/R/library/base/R-ex/rect.R
+lib/R/library/base/R-ex/reg.finalizer.R
 lib/R/library/base/R-ex/relevel.R
 lib/R/library/base/R-ex/rep.R
 lib/R/library/base/R-ex/replications.R
+lib/R/library/base/R-ex/reshape.R
 lib/R/library/base/R-ex/reshapeLong.R
 lib/R/library/base/R-ex/reshapeWide.R
 lib/R/library/base/R-ex/rev.R
@@ -1729,7 +1934,6 @@ lib/R/library/base/R-ex/step.R
 lib/R/library/base/R-ex/stop.R
 lib/R/library/base/R-ex/stopifnot.R
 lib/R/library/base/R-ex/str.R
-lib/R/library/base/R-ex/svd.R
 lib/R/library/base/R-ex/stripchart.R
 lib/R/library/base/R-ex/strptime.R
 lib/R/library/base/R-ex/strsplit.R
@@ -1740,20 +1944,24 @@ lib/R/library/base/R-ex/subset.R
 lib/R/library/base/R-ex/substitute.R
 lib/R/library/base/R-ex/substr.R
 lib/R/library/base/R-ex/summary.R
+lib/R/library/base/R-ex/summary.manova.R
 lib/R/library/base/R-ex/sunflowerplot.R
 lib/R/library/base/R-ex/sunspots.R
+lib/R/library/base/R-ex/svd.R
 lib/R/library/base/R-ex/sweep.R
 lib/R/library/base/R-ex/swiss.R
 lib/R/library/base/R-ex/switch.R
 lib/R/library/base/R-ex/symbols.R
 lib/R/library/base/R-ex/symnum.R
 lib/R/library/base/R-ex/sys.parent.R
-lib/R/library/base/R-ex/system.R
 lib/R/library/base/R-ex/system.file.R
 lib/R/library/base/R-ex/system.time.R
 lib/R/library/base/R-ex/table.R
 lib/R/library/base/R-ex/tabulate.R
 lib/R/library/base/R-ex/tapply.R
+lib/R/library/base/R-ex/taskCallback.R
+lib/R/library/base/R-ex/taskCallbackManager.R
+lib/R/library/base/R-ex/taskCallbackNames.R
 lib/R/library/base/R-ex/tempfile.R
 lib/R/library/base/R-ex/termplot.R
 lib/R/library/base/R-ex/text.R
@@ -1768,7 +1976,6 @@ lib/R/library/base/R-ex/trees.R
 lib/R/library/base/R-ex/try.R
 lib/R/library/base/R-ex/ts.R
 lib/R/library/base/R-ex/typeof.R
-lib/R/library/base/R-ex/undoc.R
 lib/R/library/base/R-ex/unique.R
 lib/R/library/base/R-ex/uniroot.R
 lib/R/library/base/R-ex/units.R
@@ -1781,26 +1988,30 @@ lib/R/library/base/R-ex/uspop.R
 lib/R/library/base/R-ex/vector.R
 lib/R/library/base/R-ex/volcano.R
 lib/R/library/base/R-ex/warning.R
-lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/warnings.R
 lib/R/library/base/R-ex/warpbreaks.R
 lib/R/library/base/R-ex/weekday.POSIXt.R
 lib/R/library/base/R-ex/weighted.mean.R
 lib/R/library/base/R-ex/weighted.residuals.R
+lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/which.min.R
 lib/R/library/base/R-ex/window.R
+lib/R/library/base/R-ex/with.R
 lib/R/library/base/R-ex/women.R
 lib/R/library/base/R-ex/write.R
-lib/R/library/base/R-ex/write.table.R
 lib/R/library/base/R-ex/xtabs.R
+lib/R/library/base/R-ex/write.table.R
 lib/R/library/base/R-ex/xy.coords.R
 lib/R/library/base/R-ex/xyz.coords.R
 lib/R/library/base/R-ex/zAlias.R
 lib/R/library/base/R-ex/zC.R
 lib/R/library/base/R-ex/zMachine.R
 lib/R/library/base/R-ex/zMethods.R
+lib/R/library/base/R-ex/zScript.R
 lib/R/library/base/R-ex/Rprof.R
 lib/R/library/base/R-ex/gnome.R
+lib/R/library/base/R-ex/nsl.R
+lib/R/library/base/R-ex/png.R
 lib/R/library/base/R-ex/AIC.R
 lib/R/library/base/latex/x11.tex
 lib/R/library/base/latex/AIC.logLik.tex
@@ -1858,7 +2069,6 @@ lib/R/library/base/latex/RdUtils.tex
 lib/R/library/base/latex/Recall.tex
 lib/R/library/base/latex/Rhome.tex
 lib/R/library/base/latex/Round.tex
-lib/R/library/base/latex/Script.tex
 lib/R/library/base/latex/SignRank.tex
 lib/R/library/base/latex/Special.tex
 lib/R/library/base/latex/Startup.tex
@@ -1904,6 +2114,7 @@ lib/R/library/base/latex/args.tex
 lib/R/library/base/latex/array.tex
 lib/R/library/base/latex/arrows.tex
 lib/R/library/base/latex/as.POSIXlt.tex
+lib/R/library/base/latex/as.environment.tex
 lib/R/library/base/latex/as.function.tex
 lib/R/library/base/latex/assign.tex
 lib/R/library/base/latex/assocplot.tex
@@ -1914,10 +2125,12 @@ lib/R/library/base/latex/attr.tex
 lib/R/library/base/latex/attributes.tex
 lib/R/library/base/latex/autoload.tex
 lib/R/library/base/latex/ave.tex
-lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/axis.tex
+lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/backsolve.tex
+lib/R/library/base/latex/bandwidth.tex
 lib/R/library/base/latex/barplot.tex
+lib/R/library/base/latex/bindenv.tex
 lib/R/library/base/latex/birthday.tex
 lib/R/library/base/latex/body.tex
 lib/R/library/base/latex/box.tex
@@ -1936,21 +2149,19 @@ lib/R/library/base/latex/cars.tex
 lib/R/library/base/latex/case.names.tex
 lib/R/library/base/latex/cat.tex
 lib/R/library/base/latex/cbind.tex
+lib/R/library/base/latex/co2.tex
 lib/R/library/base/latex/char.expand.tex
 lib/R/library/base/latex/character.tex
-lib/R/library/base/latex/chartr.tex
 lib/R/library/base/latex/charmatch.tex
+lib/R/library/base/latex/chartr.tex
 lib/R/library/base/latex/check.options.tex
-lib/R/library/base/latex/checkFF.tex
 lib/R/library/base/latex/chickwts.tex
 lib/R/library/base/latex/chol.tex
 lib/R/library/base/latex/chol2inv.tex
 lib/R/library/base/latex/chull.tex
 lib/R/library/base/latex/class.tex
 lib/R/library/base/latex/close.socket.tex
-lib/R/library/base/latex/co2.tex
 lib/R/library/base/latex/codes.tex
-lib/R/library/base/latex/codoc.tex
 lib/R/library/base/latex/coefficients.tex
 lib/R/library/base/latex/col.tex
 lib/R/library/base/latex/col2rgb.tex
@@ -1983,8 +2194,8 @@ lib/R/library/base/latex/data.class.tex
 lib/R/library/base/latex/data.frame.tex
 lib/R/library/base/latex/data.matrix.tex
 lib/R/library/base/latex/dataentry.tex
-lib/R/library/base/latex/date.tex
 lib/R/library/base/latex/dcf.tex
+lib/R/library/base/latex/date.tex
 lib/R/library/base/latex/debug.tex
 lib/R/library/base/latex/debugger.tex
 lib/R/library/base/latex/delay.tex
@@ -2030,13 +2241,13 @@ lib/R/library/base/latex/example.tex
 lib/R/library/base/latex/exists.tex
 lib/R/library/base/latex/expand.grid.tex
 lib/R/library/base/latex/expand.model.frame.tex
+lib/R/library/base/latex/factor.tex
 lib/R/library/base/latex/expression.tex
-lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/extractAIC.tex
-lib/R/library/base/latex/factor.tex
 lib/R/library/base/latex/factor.scope.tex
 lib/R/library/base/latex/faithful.tex
 lib/R/library/base/latex/family.tex
+lib/R/library/base/latex/fft.tex
 lib/R/library/base/latex/file.access.tex
 lib/R/library/base/latex/file.choose.tex
 lib/R/library/base/latex/file.info.tex
@@ -2053,22 +2264,24 @@ lib/R/library/base/latex/format.info.tex
 lib/R/library/base/latex/formatDL.tex
 lib/R/library/base/latex/formatc.tex
 lib/R/library/base/latex/formula.tex
+lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/fourfoldplot.tex
 lib/R/library/base/latex/frame.tex
 lib/R/library/base/latex/freeny.tex
 lib/R/library/base/latex/ftable.tex
 lib/R/library/base/latex/ftable.formula.tex
 lib/R/library/base/latex/function.tex
-lib/R/library/base/latex/gc.tex
 lib/R/library/base/latex/gc.time.tex
 lib/R/library/base/latex/gctorture.tex
 lib/R/library/base/latex/get.tex
+lib/R/library/base/latex/getNativeSymbolInfo.tex
 lib/R/library/base/latex/getenv.tex
 lib/R/library/base/latex/getwd.tex
 lib/R/library/base/latex/gl.tex
 lib/R/library/base/latex/glm.tex
 lib/R/library/base/latex/glm.control.tex
 lib/R/library/base/latex/glm.summaries.tex
+lib/R/library/base/latex/glm.summary.tex
 lib/R/library/base/latex/gray.tex
 lib/R/library/base/latex/grep.tex
 lib/R/library/base/latex/grid.tex
@@ -2077,6 +2290,7 @@ lib/R/library/base/latex/help.search.tex
 lib/R/library/base/latex/help.start.tex
 lib/R/library/base/latex/hist.tex
 lib/R/library/base/latex/hsv.tex
+lib/R/library/base/latex/identical.tex
 lib/R/library/base/latex/identify.tex
 lib/R/library/base/latex/ifelse.tex
 lib/R/library/base/latex/image.tex
@@ -2095,11 +2309,10 @@ lib/R/library/base/latex/is.finite.tex
 lib/R/library/base/latex/is.function.tex
 lib/R/library/base/latex/is.language.tex
 lib/R/library/base/latex/is.object.tex
+lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/is.recursive.tex
 lib/R/library/base/latex/is.single.tex
-lib/R/library/base/latex/isR.tex
 lib/R/library/base/latex/islands.tex
-lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/jitter.tex
 lib/R/library/base/latex/kappa.tex
 lib/R/library/base/latex/kronecker.tex
@@ -2116,14 +2329,17 @@ lib/R/library/base/latex/license.tex
 lib/R/library/base/latex/lines.tex
 lib/R/library/base/latex/list.tex
 lib/R/library/base/latex/list.files.tex
+lib/R/library/base/latex/lm.tex
 lib/R/library/base/latex/lm.influence.tex
 lib/R/library/base/latex/lm.summaries.tex
+lib/R/library/base/latex/lm.summary.tex
 lib/R/library/base/latex/lmfit.tex
 lib/R/library/base/latex/load.tex
 lib/R/library/base/latex/localeconv.tex
 lib/R/library/base/latex/locales.tex
 lib/R/library/base/latex/locator.tex
 lib/R/library/base/latex/logLik.tex
+lib/R/library/base/latex/logLik.glm.tex
 lib/R/library/base/latex/logLik.lm.tex
 lib/R/library/base/latex/logical.tex
 lib/R/library/base/latex/loglin.tex
@@ -2163,8 +2379,8 @@ lib/R/library/base/latex/mode.tex
 lib/R/library/base/latex/model.extract.tex
 lib/R/library/base/latex/model.frame.tex
 lib/R/library/base/latex/model.matrix.tex
-lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/morley.tex
+lib/R/library/base/latex/model.tables.tex
 lib/R/library/base/latex/mosaicplot.tex
 lib/R/library/base/latex/mtcars.tex
 lib/R/library/base/latex/mtext.tex
@@ -2177,6 +2393,7 @@ lib/R/library/base/latex/names.tex
 lib/R/library/base/latex/naprint.tex
 lib/R/library/base/latex/nargs.tex
 lib/R/library/base/latex/nchar.tex
+lib/R/library/base/latex/nclass.tex
 lib/R/library/base/latex/nextn.tex
 lib/R/library/base/latex/nhtemp.tex
 lib/R/library/base/latex/nlevels.tex
@@ -2187,6 +2404,7 @@ lib/R/library/base/latex/nrow.tex
 lib/R/library/base/latex/numeric.tex
 lib/R/library/base/latex/object.size.tex
 lib/R/library/base/latex/octmode.tex
+lib/R/library/base/latex/par.tex
 lib/R/library/base/latex/offset.tex
 lib/R/library/base/latex/on.exit.tex
 lib/R/library/base/latex/optim.tex
@@ -2198,13 +2416,13 @@ lib/R/library/base/latex/p.adjust.tex
 lib/R/library/base/latex/package.contents.tex
 lib/R/library/base/latex/package.dependencies.tex
 lib/R/library/base/latex/package.skeleton.tex
+lib/R/library/base/latex/packageStatus.tex
 lib/R/library/base/latex/page.tex
 lib/R/library/base/latex/pairs.tex
 lib/R/library/base/latex/pairs.formula.tex
 lib/R/library/base/latex/palette.tex
 lib/R/library/base/latex/palettes.tex
 lib/R/library/base/latex/panel.smooth.tex
-lib/R/library/base/latex/par.tex
 lib/R/library/base/latex/parse.tex
 lib/R/library/base/latex/paste.tex
 lib/R/library/base/latex/pdf.tex
@@ -2231,6 +2449,7 @@ lib/R/library/base/latex/polygon.tex
 lib/R/library/base/latex/polyroot.tex
 lib/R/library/base/latex/pos.to.env.tex
 lib/R/library/base/latex/postscript.tex
+lib/R/library/base/latex/qr.tex
 lib/R/library/base/latex/power.tex
 lib/R/library/base/latex/ppoints.tex
 lib/R/library/base/latex/precip.tex
@@ -2243,6 +2462,7 @@ lib/R/library/base/latex/pressure.tex
 lib/R/library/base/latex/pretty.tex
 lib/R/library/base/latex/print.tex
 lib/R/library/base/latex/print.coefmat.tex
+lib/R/library/base/latex/print.dataframe.tex
 lib/R/library/base/latex/print.default.tex
 lib/R/library/base/latex/print.matrix.tex
 lib/R/library/base/latex/print.ts.tex
@@ -2255,7 +2475,6 @@ lib/R/library/base/latex/prop.table.tex
 lib/R/library/base/latex/pushBack.tex
 lib/R/library/base/latex/putenv.tex
 lib/R/library/base/latex/qqnorm.tex
-lib/R/library/base/latex/qr.tex
 lib/R/library/base/latex/qraux.tex
 lib/R/library/base/latex/quakes.tex
 lib/R/library/base/latex/quantile.tex
@@ -2263,6 +2482,8 @@ lib/R/library/base/latex/quit.tex
 lib/R/library/base/latex/randu.tex
 lib/R/library/base/latex/range.tex
 lib/R/library/base/latex/rank.tex
+lib/R/library/base/latex/read.00Index.tex
+lib/R/library/base/latex/read.ftable.tex
 lib/R/library/base/latex/read.fwf.tex
 lib/R/library/base/latex/read.socket.tex
 lib/R/library/base/latex/read.table.tex
@@ -2272,11 +2493,13 @@ lib/R/library/base/latex/readline.tex
 lib/R/library/base/latex/real.tex
 lib/R/library/base/latex/recordplot.tex
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+lib/R/library/tcltk/TITLE
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+lib/R/library/tcltk/CONTENTS
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+lib/R/library/tools/R-ex/checkFF.R
+lib/R/library/tools/R-ex/undoc.R
+lib/R/library/tools/latex/QA.tex
+lib/R/library/tools/latex/checkFF.tex
+lib/R/library/tools/latex/checkTnF.tex
+lib/R/library/tools/latex/codoc.tex
+lib/R/library/tools/latex/tools-internal.tex
+lib/R/library/tools/latex/undoc.tex
+lib/R/library/tools/html/checkTnF.html
+lib/R/library/tools/html/QA.html
+lib/R/library/tools/html/checkFF.html
+lib/R/library/tools/html/00Index.html
+lib/R/library/tools/html/codoc.html
+lib/R/library/tools/html/tools-internal.html
+lib/R/library/tools/html/undoc.html
+lib/R/library/tools/man/tools.Rd
+lib/R/library/tools/help/checkTnF
+lib/R/library/tools/help/QA
+lib/R/library/tools/help/checkFF
+lib/R/library/tools/help/AnIndex
+lib/R/library/tools/help/codoc
+lib/R/library/tools/help/tools-internal
+lib/R/library/tools/help/undoc
+lib/R/library/tools/DESCRIPTION
+lib/R/library/tools/TITLE
+lib/R/library/tools/INDEX
+lib/R/library/tools/CONTENTS
+lib/R/library/ts/html/ts.union.html
+lib/R/library/ts/html/BJsales.html
+lib/R/library/ts/html/EuStockMarkets.html
+lib/R/library/ts/html/LakeHuron.html
+lib/R/library/ts/html/UKDriverDeaths.html
+lib/R/library/ts/html/UKLungDeaths.html
+lib/R/library/ts/html/USAccDeaths.html
+lib/R/library/ts/html/acf.html
+lib/R/library/ts/html/ar.html
+lib/R/library/ts/html/ar.ols.html
+lib/R/library/ts/html/arima0.html
+lib/R/library/ts/html/austres.html
+lib/R/library/ts/html/beavers.html
+lib/R/library/ts/html/box.test.html
+lib/R/library/ts/html/cpgram.html
+lib/R/library/ts/html/diffinv.html
+lib/R/library/ts/html/embed.html
+lib/R/library/ts/html/filter.html
+lib/R/library/ts/html/kernapply.html
+lib/R/library/ts/html/kernel.html
+lib/R/library/ts/html/lag.html
+lib/R/library/ts/html/lag.plot.html
+lib/R/library/ts/html/lh.html
+lib/R/library/ts/html/lynx.html
+lib/R/library/ts/html/na.contiguous.html
+lib/R/library/ts/html/nottem.html
+lib/R/library/ts/html/plot.acf.html
+lib/R/library/ts/html/plot.spec.html
+lib/R/library/ts/html/pp.test.html
+lib/R/library/ts/html/spec.ar.html
+lib/R/library/ts/html/spec.pgram.html
+lib/R/library/ts/html/spec.taper.html
+lib/R/library/ts/html/spectrum.html
+lib/R/library/ts/html/stl.html
+lib/R/library/ts/html/stlmethods.html
+lib/R/library/ts/html/sunspot.html
+lib/R/library/ts/html/toeplitz.html
+lib/R/library/ts/html/treering.html
+lib/R/library/ts/html/ts-internal.html
+lib/R/library/ts/html/ts.plot.html
+lib/R/library/ts/html/00Index.html
 lib/R/library/ts/R-ex/ts.union.R
 lib/R/library/ts/R-ex/acf.R
 lib/R/library/ts/R-ex/ar.R
@@ -3204,7 +3575,7 @@ lib/R/library/ts/R-ex/kernapply.R
 lib/R/library/ts/R-ex/kernel.R
 lib/R/library/ts/R-ex/lag.R
 lib/R/library/ts/R-ex/lag.plot.R
-lib/R/library/ts/R-ex/na.omit.ts.R
+lib/R/library/ts/R-ex/na.contiguous.R
 lib/R/library/ts/R-ex/plot.acf.R
 lib/R/library/ts/R-ex/pp.test.R
 lib/R/library/ts/R-ex/spec.ar.R
@@ -3229,7 +3600,6 @@ lib/R/library/ts/latex/austres.tex
 lib/R/library/ts/latex/beavers.tex
 lib/R/library/ts/latex/box.test.tex
 lib/R/library/ts/latex/cpgram.tex
-lib/R/library/ts/latex/diff.ts.tex
 lib/R/library/ts/latex/diffinv.tex
 lib/R/library/ts/latex/embed.tex
 lib/R/library/ts/latex/filter.tex
@@ -3238,8 +3608,9 @@ lib/R/library/ts/latex/kernel.tex
 lib/R/library/ts/latex/lag.tex
 lib/R/library/ts/latex/lag.plot.tex
 lib/R/library/ts/latex/lh.tex
+lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/lynx.tex
-lib/R/library/ts/latex/na.omit.ts.tex
+lib/R/library/ts/latex/na.contiguous.tex
 lib/R/library/ts/latex/nottem.tex
 lib/R/library/ts/latex/plot.acf.tex
 lib/R/library/ts/latex/plot.spec.tex
@@ -3248,7 +3619,6 @@ lib/R/library/ts/latex/spec.ar.tex
 lib/R/library/ts/latex/spec.pgram.tex
 lib/R/library/ts/latex/spec.taper.tex
 lib/R/library/ts/latex/spectrum.tex
-lib/R/library/ts/latex/stl.tex
 lib/R/library/ts/latex/stlmethods.tex
 lib/R/library/ts/latex/sunspot.tex
 lib/R/library/ts/latex/toeplitz.tex
@@ -3256,48 +3626,7 @@ lib/R/library/ts/latex/treering.tex
 lib/R/library/ts/latex/ts-internal.tex
 lib/R/library/ts/latex/ts.plot.tex
 lib/R/library/ts/latex/BJsales.tex
-lib/R/library/ts/html/ts.union.html
-lib/R/library/ts/html/BJsales.html
-lib/R/library/ts/html/EuStockMarkets.html
-lib/R/library/ts/html/LakeHuron.html
-lib/R/library/ts/html/UKDriverDeaths.html
-lib/R/library/ts/html/UKLungDeaths.html
-lib/R/library/ts/html/USAccDeaths.html
-lib/R/library/ts/html/acf.html
-lib/R/library/ts/html/ar.html
-lib/R/library/ts/html/ar.ols.html
-lib/R/library/ts/html/arima0.html
-lib/R/library/ts/html/austres.html
-lib/R/library/ts/html/beavers.html
-lib/R/library/ts/html/box.test.html
-lib/R/library/ts/html/cpgram.html
-lib/R/library/ts/html/diff.ts.html
-lib/R/library/ts/html/diffinv.html
-lib/R/library/ts/html/embed.html
-lib/R/library/ts/html/filter.html
-lib/R/library/ts/html/kernapply.html
-lib/R/library/ts/html/kernel.html
-lib/R/library/ts/html/lag.html
-lib/R/library/ts/html/lag.plot.html
-lib/R/library/ts/html/lh.html
-lib/R/library/ts/html/lynx.html
-lib/R/library/ts/html/na.omit.ts.html
-lib/R/library/ts/html/nottem.html
-lib/R/library/ts/html/plot.acf.html
-lib/R/library/ts/html/plot.spec.html
-lib/R/library/ts/html/pp.test.html
-lib/R/library/ts/html/spec.ar.html
-lib/R/library/ts/html/spec.pgram.html
-lib/R/library/ts/html/spec.taper.html
-lib/R/library/ts/html/spectrum.html
-lib/R/library/ts/html/stl.html
-lib/R/library/ts/html/stlmethods.html
-lib/R/library/ts/html/sunspot.html
-lib/R/library/ts/html/toeplitz.html
-lib/R/library/ts/html/treering.html
-lib/R/library/ts/html/ts-internal.html
-lib/R/library/ts/html/ts.plot.html
-lib/R/library/ts/html/00Index.html
+lib/R/library/ts/libs/ts.so
 lib/R/library/ts/help/ts.union
 lib/R/library/ts/help/BJsales
 lib/R/library/ts/help/EuStockMarkets
@@ -3313,7 +3642,6 @@ lib/R/library/ts/help/austres
 lib/R/library/ts/help/beavers
 lib/R/library/ts/help/box.test
 lib/R/library/ts/help/cpgram
-lib/R/library/ts/help/diff.ts
 lib/R/library/ts/help/diffinv
 lib/R/library/ts/help/embed
 lib/R/library/ts/help/filter
@@ -3323,16 +3651,16 @@ lib/R/library/ts/help/lag
 lib/R/library/ts/help/lag.plot
 lib/R/library/ts/help/lh
 lib/R/library/ts/help/lynx
-lib/R/library/ts/help/na.omit.ts
+lib/R/library/ts/help/na.contiguous
 lib/R/library/ts/help/nottem
 lib/R/library/ts/help/plot.acf
-lib/R/library/ts/help/plot.spec
+lib/R/library/ts/help/stl
 lib/R/library/ts/help/pp.test
+lib/R/library/ts/help/plot.spec
 lib/R/library/ts/help/spec.ar
 lib/R/library/ts/help/spec.pgram
 lib/R/library/ts/help/spec.taper
 lib/R/library/ts/help/spectrum
-lib/R/library/ts/help/stl
 lib/R/library/ts/help/stlmethods
 lib/R/library/ts/help/sunspot
 lib/R/library/ts/help/toeplitz
@@ -3354,54 +3682,13 @@ lib/R/library/ts/data/lynx.R
 lib/R/library/ts/data/nottem.R
 lib/R/library/ts/data/sunspot.R
 lib/R/library/ts/data/00Index
-lib/R/library/ts/libs/ts.so
+lib/R/library/ts/R/ts
+lib/R/library/ts/man/ts.Rd
 lib/R/library/ts/DESCRIPTION
 lib/R/library/ts/TITLE
 lib/R/library/ts/SOURCES
 lib/R/library/ts/INDEX
 lib/R/library/ts/CONTENTS
-lib/R/library/tcltk/help/AnIndex
-lib/R/library/tcltk/help/TclInterface
-lib/R/library/tcltk/help/TkCommands
-lib/R/library/tcltk/help/TkWidgetcmds
-lib/R/library/tcltk/help/TkWidgets
-lib/R/library/tcltk/help/tkpager
-lib/R/library/tcltk/R-ex/TclInterface.R
-lib/R/library/tcltk/R-ex/TkCommands.R
-lib/R/library/tcltk/R-ex/TkWidgetcmds.R
-lib/R/library/tcltk/R-ex/TkWidgets.R
-lib/R/library/tcltk/R-ex/tkpager.R
-lib/R/library/tcltk/latex/TclInterface.tex
-lib/R/library/tcltk/latex/TkCommands.tex
-lib/R/library/tcltk/latex/TkWidgetcmds.tex
-lib/R/library/tcltk/latex/TkWidgets.tex
-lib/R/library/tcltk/latex/tkpager.tex
-lib/R/library/tcltk/html/00Index.html
-lib/R/library/tcltk/html/TclInterface.html
-lib/R/library/tcltk/html/TkCommands.html
-lib/R/library/tcltk/html/TkWidgetcmds.html
-lib/R/library/tcltk/html/TkWidgets.html
-lib/R/library/tcltk/html/tkpager.html
-lib/R/library/tcltk/demo/00Index
-lib/R/library/tcltk/demo/tkcanvas.R
-lib/R/library/tcltk/demo/tkdensity.R
-lib/R/library/tcltk/demo/tkfaq.R
-lib/R/library/tcltk/demo/tkfilefind.R
-lib/R/library/tcltk/demo/tkttest.R
-lib/R/library/tcltk/R/tcltk
-lib/R/library/tcltk/exec/widget.tcl
-lib/R/library/tcltk/exec/pkgIndex.tcl
-lib/R/library/tcltk/exec/util-dump.tcl
-lib/R/library/tcltk/exec/util-expand.tcl
-lib/R/library/tcltk/exec/util-number.tcl
-lib/R/library/tcltk/exec/util-string.tcl
-lib/R/library/tcltk/exec/util-tk.tcl
-lib/R/library/tcltk/exec/util.tcl
-lib/R/library/tcltk/exec/hierarchy.tcl
-lib/R/library/tcltk/DESCRIPTION
-lib/R/library/tcltk/TITLE
-lib/R/library/tcltk/INDEX
-lib/R/library/tcltk/CONTENTS
 lib/R/library/R.css
 lib/R/AUTHORS
 lib/R/COPYING
@@ -3411,88 +3698,114 @@ lib/R/FAQ
 lib/R/NEWS
 lib/R/RESOURCES
 lib/R/THANKS
-@dirrm lib/R/library/tcltk/exec
-@dirrm lib/R/library/tcltk/R
-@dirrm lib/R/library/tcltk/demo
-@dirrm lib/R/library/tcltk/html
-@dirrm lib/R/library/tcltk/latex
-@dirrm lib/R/library/tcltk/R-ex
-@dirrm lib/R/library/tcltk/help
-@dirrm lib/R/library/tcltk
-@dirrm lib/R/library/ts/libs
+@dirrm lib/R/library/ts/man
+@dirrm lib/R/library/ts/R
 @dirrm lib/R/library/ts/data
 @dirrm lib/R/library/ts/help
-@dirrm lib/R/library/ts/html
+@dirrm lib/R/library/ts/libs
 @dirrm lib/R/library/ts/latex
 @dirrm lib/R/library/ts/R-ex
-@dirrm lib/R/library/ts/R
+@dirrm lib/R/library/ts/html
 @dirrm lib/R/library/ts
+@dirrm lib/R/library/tools/help
+@dirrm lib/R/library/tools/man
+@dirrm lib/R/library/tools/html
+@dirrm lib/R/library/tools/latex
+@dirrm lib/R/library/tools/R-ex
+@dirrm lib/R/library/tools/R
+@dirrm lib/R/library/tools
+@dirrm lib/R/library/tcltk/man
+@dirrm lib/R/library/tcltk/R
+@dirrm lib/R/library/tcltk/exec
+@dirrm lib/R/library/tcltk/demo
+@dirrm lib/R/library/tcltk/help
+@dirrm lib/R/library/tcltk/latex
+@dirrm lib/R/library/tcltk/R-ex
+@dirrm lib/R/library/tcltk/html
+@dirrm lib/R/library/tcltk
 @dirrm lib/R/library/stepfun/help
+@dirrm lib/R/library/stepfun/man
 @dirrm lib/R/library/stepfun/html
 @dirrm lib/R/library/stepfun/latex
 @dirrm lib/R/library/stepfun/R-ex
 @dirrm lib/R/library/stepfun/R
 @dirrm lib/R/library/stepfun
-@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines/libs
+@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/man
 @dirrm lib/R/library/splines/html
 @dirrm lib/R/library/splines/latex
 @dirrm lib/R/library/splines/R-ex
-@dirrm lib/R/library/splines/R
+@dirrm lib/R/library/splines/help
 @dirrm lib/R/library/splines
-@dirrm lib/R/library/base/demo
+@dirrm lib/R/library/base/man
 @dirrm lib/R/library/base/R
+@dirrm lib/R/library/base/demo
 @dirrm lib/R/library/base/data
-@dirrm lib/R/library/base/html
+@dirrm lib/R/library/base/help
 @dirrm lib/R/library/base/latex
 @dirrm lib/R/library/base/R-ex
-@dirrm lib/R/library/base/help
+@dirrm lib/R/library/base/html
 @dirrm lib/R/library/base
 @dirrm lib/R/library/mva/libs
 @dirrm lib/R/library/mva/R
+@dirrm lib/R/library/mva/man
 @dirrm lib/R/library/mva/data
-@dirrm lib/R/library/mva/html
+@dirrm lib/R/library/mva/help
 @dirrm lib/R/library/mva/latex
 @dirrm lib/R/library/mva/R-ex
-@dirrm lib/R/library/mva/help
+@dirrm lib/R/library/mva/html
 @dirrm lib/R/library/mva
-@dirrm lib/R/library/modreg/libs
+@dirrm lib/R/library/modreg/man
+@dirrm lib/R/library/modreg/R
 @dirrm lib/R/library/modreg/data
 @dirrm lib/R/library/modreg/help
-@dirrm lib/R/library/modreg/html
+@dirrm lib/R/library/modreg/libs
 @dirrm lib/R/library/modreg/latex
 @dirrm lib/R/library/modreg/R-ex
-@dirrm lib/R/library/modreg/R
+@dirrm lib/R/library/modreg/html
 @dirrm lib/R/library/modreg
-@dirrm lib/R/library/lqs/help
+@dirrm lib/R/library/methods/libs
+@dirrm lib/R/library/methods/R
+@dirrm lib/R/library/methods/man
+@dirrm lib/R/library/methods/html
+@dirrm lib/R/library/methods/latex
+@dirrm lib/R/library/methods/R-ex
+@dirrm lib/R/library/methods/help
+@dirrm lib/R/library/methods
 @dirrm lib/R/library/lqs/libs
+@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/man
 @dirrm lib/R/library/lqs/html
 @dirrm lib/R/library/lqs/latex
 @dirrm lib/R/library/lqs/R-ex
-@dirrm lib/R/library/lqs/R
+@dirrm lib/R/library/lqs/help
 @dirrm lib/R/library/lqs
 @dirrm lib/R/library/eda/libs
 @dirrm lib/R/library/eda/R
+@dirrm lib/R/library/eda/man
 @dirrm lib/R/library/eda/demo
-@dirrm lib/R/library/eda/html
+@dirrm lib/R/library/eda/help
 @dirrm lib/R/library/eda/latex
 @dirrm lib/R/library/eda/R-ex
-@dirrm lib/R/library/eda/help
+@dirrm lib/R/library/eda/html
 @dirrm lib/R/library/eda
-@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest/libs
+@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/man
 @dirrm lib/R/library/ctest/html
 @dirrm lib/R/library/ctest/latex
 @dirrm lib/R/library/ctest/R-ex
-@dirrm lib/R/library/ctest/R
+@dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest
 @dirrm lib/R/library/nls/libs
 @dirrm lib/R/library/nls/R
+@dirrm lib/R/library/nls/man
 @dirrm lib/R/library/nls/data
-@dirrm lib/R/library/nls/html
+@dirrm lib/R/library/nls/help
 @dirrm lib/R/library/nls/latex
 @dirrm lib/R/library/nls/R-ex
-@dirrm lib/R/library/nls/help
+@dirrm lib/R/library/nls/html
 @dirrm lib/R/library/nls
 @dirrm lib/R/library
 @dirrm lib/R/modules
@@ -3505,6 +3818,7 @@ lib/R/THANKS
 @dirrm lib/R/share/perl/R
 @dirrm lib/R/share/perl
 @dirrm lib/R/share/make
+@dirrm lib/R/share/R
 @dirrm lib/R/share
 @dirrm lib/R/etc
 @dirrm lib/R/doc/manual