Update to version 1.3.1

PR: 30370
Submitted by: MAINTAINER

4 files changed, 973 insertions, 813 deletions

diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile
index ec4794694b4b..100b753fbad8 100644
--- a/math/R-letter/Makefile
+++ b/math/R-letter/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	R
-PORTVERSION=	1.2.1
+PORTVERSION=	1.3.1
 CATEGORIES=	math
 MASTER_SITES=	http://cran.r-project.org/src/base/ \
 		ftp://cran.r-project.org/pub/R/src/base/ \
diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo
index 5bfbfa00f3d0..3e05041657ad 100644
--- a/math/R-letter/distinfo
+++ b/math/R-letter/distinfo
@@ -1 +1 @@
-MD5 (R-1.2.1.tgz) = 4906d9dafb62e7e02abad34c5a0b042f
+MD5 (R-1.3.1.tgz) = 08ede7a15abea4d8efdb74425cbed706
diff --git a/math/R-letter/files/patch-aa b/math/R-letter/files/patch-aa
new file mode 100644
index 000000000000..f1f2ae71c3f5
--- /dev/null
+++ b/math/R-letter/files/patch-aa
@@ -0,0 +1,12 @@
+*** share/sh/help-links.sh	Thu Sep  6 11:00:11 2001
+--- share/sh/help-links.sh.orig	Thu Sep  6 11:00:30 2001
+***************
+*** 35,40 ****
+--- 35,41 ----
+  rm -f ${PKGLIST}
+  rm -f ${SEARCHINDEX}
+  cp ${R_HOME}/doc/html/packages-head.html ${PKGLIST}
++ chmod u+w ${PKGLIST}
+  
+  get_unique () {
+    if test -r ${1}; then
diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist
index cf73318e3619..878faa4134d5 100644
--- a/math/R-letter/pkg-plist
+++ b/math/R-letter/pkg-plist
@@ -1,33 +1,127 @@
 bin/R
-lib/R/bin/R.bin
-lib/R/bin/R
+lib/R/afm/agd_____.afm
+lib/R/afm/agdo____.afm
+lib/R/afm/agw_____.afm
+lib/R/afm/agwo____.afm
+lib/R/afm/bkd_____.afm
+lib/R/afm/bkdi____.afm
+lib/R/afm/bkl_____.afm
+lib/R/afm/bkli____.afm
+lib/R/afm/cob_____.afm
+lib/R/afm/cobo____.afm
+lib/R/afm/com_____.afm
+lib/R/afm/coo_____.afm
+lib/R/afm/hv______.afm
+lib/R/afm/hvb_____.afm
+lib/R/afm/hvbo____.afm
+lib/R/afm/hvn_____.afm
+lib/R/afm/hvnb____.afm
+lib/R/afm/hvnbo___.afm
+lib/R/afm/hvno____.afm
+lib/R/afm/hvo_____.afm
+lib/R/afm/ncb_____.afm
+lib/R/afm/ncbi____.afm
+lib/R/afm/nci_____.afm
+lib/R/afm/ncr_____.afm
+lib/R/afm/pob_____.afm
+lib/R/afm/pobi____.afm
+lib/R/afm/poi_____.afm
+lib/R/afm/por_____.afm
+lib/R/afm/tib_____.afm
+lib/R/afm/tibi____.afm
+lib/R/afm/tii_____.afm
+lib/R/afm/tir_____.afm
+lib/R/afm/sy______.afm
+lib/R/afm/AdobeStd.enc
+lib/R/afm/AdobeSym.enc
+lib/R/afm/ISOLatin1.enc
+lib/R/afm/ISOLatin2.enc
+lib/R/afm/ISOLatin9.enc
+lib/R/afm/MacRoman.enc
+lib/R/afm/PDFDoc.enc
+lib/R/afm/WinAnsi.enc
+lib/R/doc/KEYWORDS
+lib/R/doc/KEYWORDS.db
+lib/R/doc/html/R.css
+lib/R/doc/html/left.jpg
+lib/R/doc/html/logo.jpg
+lib/R/doc/html/logosm.jpg
+lib/R/doc/html/right.jpg
+lib/R/doc/html/up.jpg
+lib/R/doc/html/about.html
+lib/R/doc/html/faq.html
+lib/R/doc/html/function.html
+lib/R/doc/html/packages-head.html
+lib/R/doc/html/resources.html
+lib/R/doc/html/template.html
+lib/R/doc/html/thanks.html
+lib/R/doc/html/index.html
+lib/R/doc/html/search/IndexEntry.class
+lib/R/doc/html/search/IndexStream.class
+lib/R/doc/html/search/IndexTable.class
+lib/R/doc/html/search/SearchEngine.class
+lib/R/doc/html/search/Tracer.class
+lib/R/doc/html/search/Value.class
+lib/R/doc/html/search/SearchEngine-foot.html
+lib/R/doc/html/search/SearchEngine-head.html
+lib/R/doc/html/search/SearchObject.html
+lib/R/doc/html/search/SearchEngine.html
+lib/R/doc/html/search/index.txt
+lib/R/doc/html/packages.html
+lib/R/doc/manual/R-FAQ.html
+lib/R/doc/manual/R-admin.html
+lib/R/doc/manual/R-data.html
+lib/R/doc/manual/R-exts.html
+lib/R/doc/manual/R-intro.html
+lib/R/doc/manual/R-lang.html
+lib/R/etc/Makeconf
+lib/R/etc/Renviron
+lib/R/share/make/shlib.mk
+lib/R/share/make/tests.mk
+lib/R/share/perl/R/Dcf.pm
+lib/R/share/perl/R/Rd.pm
+lib/R/share/perl/R/Rdconv.pm
+lib/R/share/perl/R/Rdlists.pm
+lib/R/share/perl/R/Rdtools.pm
+lib/R/share/perl/R/Utils.pm
+lib/R/share/perl/Text/DelimMatch.pm
+lib/R/share/perl/Rd2contents.pl
+lib/R/share/perl/build-help.pl
+lib/R/share/perl/extract-usage.pl
+lib/R/share/perl/hhw-to-rtf.pl
+lib/R/share/perl/html-rtf.pl
+lib/R/share/perl/maketitle.pl
+lib/R/share/perl/massage-Examples.pl
+lib/R/share/perl/parse-html.pl
+lib/R/share/sh/dcf.sh
+lib/R/share/sh/echo.sh
+lib/R/share/sh/help-links.sh
+lib/R/share/texmf/Rd.sty
+lib/R/share/texmf/hyperref.cfg
+lib/R/share/texmf/omsaer.fd
+lib/R/share/texmf/omsaett.fd
+lib/R/share/texmf/omscmtt.fd
 lib/R/bin/BATCH
 lib/R/bin/LINK
 lib/R/bin/Rcmd
 lib/R/bin/Rdiff
 lib/R/bin/Rd2dvi
 lib/R/bin/Rd2txt
-lib/R/bin/filename
 lib/R/bin/help
-lib/R/bin/help.links
-lib/R/bin/maketitle.awk
-lib/R/bin/massage-Examples
 lib/R/bin/pager
 lib/R/bin/COMPILE
 lib/R/bin/INSTALL
 lib/R/bin/REMOVE
-lib/R/bin/Rd2contents
 lib/R/bin/Rdconv
 lib/R/bin/Rdindex
 lib/R/bin/Rprof
 lib/R/bin/SHLIB
 lib/R/bin/Sd2Rd
-lib/R/bin/build-help
 lib/R/bin/build
 lib/R/bin/check
-lib/R/bin/extract-usage
 lib/R/bin/libtool
-lib/R/bin/R_X11.so
+lib/R/bin/R
+lib/R/bin/R.bin
 lib/R/include/R_ext/Applic.h
 lib/R/include/R_ext/Arith.h
 lib/R/include/R_ext/Boolean.h
@@ -39,21 +133,26 @@ lib/R/include/R_ext/Mathlib.h
 lib/R/include/R_ext/Memory.h
 lib/R/include/R_ext/Print.h
 lib/R/include/R_ext/PrtUtil.h
+lib/R/include/R_ext/R-ftp-http.h
 lib/R/include/R_ext/RS.h
 lib/R/include/R_ext/Random.h
+lib/R/include/R_ext/RConverters.h
+lib/R/include/R_ext/Rdynload.h
 lib/R/include/R_ext/Utils.h
 lib/R/include/R_ext/eventloop.h
-lib/R/include/R_ext/f2c.h
 lib/R/include/R.h
-lib/R/include/Rconfig.h
+lib/R/include/S.h
 lib/R/include/Rdefines.h
 lib/R/include/Rgraphics.h
 lib/R/include/Rinternals.h
 lib/R/include/Rmath.h
+lib/R/include/Rconfig.h
 lib/R/include/Rversion.h
-lib/R/include/S.h
+lib/R/modules/R_X11.so
+lib/R/modules/internet.so
+lib/R/modules/lapack.so
+lib/R/modules/vfonts.so
 lib/R/library/nls/help/sortedXyData
-lib/R/library/nls/help/00Titles
 lib/R/library/nls/help/BOD
 lib/R/library/nls/help/CO2
 lib/R/library/nls/help/ChickWeight
@@ -72,14 +171,15 @@ lib/R/library/nls/help/SSasympOrig
 lib/R/library/nls/help/SSbiexp
 lib/R/library/nls/help/SSfol
 lib/R/library/nls/help/SSfpl
+lib/R/library/nls/help/SSgompertz
 lib/R/library/nls/help/SSlogis
 lib/R/library/nls/help/SSmicmen
+lib/R/library/nls/help/SSweibull
 lib/R/library/nls/help/Theoph
 lib/R/library/nls/help/asOneSidedFormula
 lib/R/library/nls/help/clearNames
 lib/R/library/nls/help/formula.nls
 lib/R/library/nls/help/getInitial
-lib/R/library/nls/help/logLik
 lib/R/library/nls/help/nls
 lib/R/library/nls/help/nls.control
 lib/R/library/nls/help/nlsModel
@@ -112,14 +212,16 @@ lib/R/library/nls/R-ex/SSasympOrig.R
 lib/R/library/nls/R-ex/SSbiexp.R
 lib/R/library/nls/R-ex/SSfol.R
 lib/R/library/nls/R-ex/SSfpl.R
+lib/R/library/nls/R-ex/SSgompertz.R
 lib/R/library/nls/R-ex/SSlogis.R
 lib/R/library/nls/R-ex/SSmicmen.R
+lib/R/library/nls/R-ex/SSweibull.R
+lib/R/library/nls/R-ex/nls.R
+lib/R/library/nls/R-ex/Theoph.R
 lib/R/library/nls/R-ex/asOneSidedFormula.R
 lib/R/library/nls/R-ex/clearNames.R
-lib/R/library/nls/R-ex/nls.R
 lib/R/library/nls/R-ex/formula.nls.R
 lib/R/library/nls/R-ex/getInitial.R
-lib/R/library/nls/R-ex/logLik.R
 lib/R/library/nls/R-ex/nls.control.R
 lib/R/library/nls/R-ex/nlsModel.R
 lib/R/library/nls/R-ex/numericDeriv.R
@@ -151,15 +253,16 @@ lib/R/library/nls/latex/SSasympOrig.tex
 lib/R/library/nls/latex/SSbiexp.tex
 lib/R/library/nls/latex/SSfol.tex
 lib/R/library/nls/latex/SSfpl.tex
+lib/R/library/nls/latex/SSgompertz.tex
 lib/R/library/nls/latex/SSlogis.tex
-lib/R/library/nls/latex/SSmicmen.tex
 lib/R/library/nls/latex/nls.tex
+lib/R/library/nls/latex/SSmicmen.tex
+lib/R/library/nls/latex/SSweibull.tex
 lib/R/library/nls/latex/Theoph.tex
 lib/R/library/nls/latex/asOneSidedFormula.tex
 lib/R/library/nls/latex/clearNames.tex
 lib/R/library/nls/latex/formula.nls.tex
 lib/R/library/nls/latex/getInitial.tex
-lib/R/library/nls/latex/logLik.tex
 lib/R/library/nls/latex/nls.control.tex
 lib/R/library/nls/latex/nlsModel.tex
 lib/R/library/nls/latex/numericDeriv.tex
@@ -193,13 +296,14 @@ lib/R/library/nls/html/SSbiexp.html
 lib/R/library/nls/html/SSfol.html
 lib/R/library/nls/html/SSfpl.html
 lib/R/library/nls/html/Theoph.html
+lib/R/library/nls/html/SSgompertz.html
 lib/R/library/nls/html/SSlogis.html
 lib/R/library/nls/html/SSmicmen.html
+lib/R/library/nls/html/SSweibull.html
 lib/R/library/nls/html/asOneSidedFormula.html
 lib/R/library/nls/html/clearNames.html
 lib/R/library/nls/html/formula.nls.html
 lib/R/library/nls/html/getInitial.html
-lib/R/library/nls/html/logLik.html
 lib/R/library/nls/html/nls.html
 lib/R/library/nls/html/nls.control.html
 lib/R/library/nls/html/nlsModel.html
@@ -210,9 +314,9 @@ lib/R/library/nls/html/profile.nls.html
 lib/R/library/nls/html/profiler.html
 lib/R/library/nls/html/profiler.nls.html
 lib/R/library/nls/html/selfStart.html
+lib/R/library/nls/html/setNames.html
 lib/R/library/nls/html/selfStart.default.html
 lib/R/library/nls/html/selfStart.formula.html
-lib/R/library/nls/html/setNames.html
 lib/R/library/nls/html/00Index.html
 lib/R/library/nls/data/Theoph.R
 lib/R/library/nls/data/BOD.R
@@ -244,16 +348,17 @@ lib/R/library/ctest/R-ex/ks.test.R
 lib/R/library/ctest/R-ex/mantelhaen.test.R
 lib/R/library/ctest/R-ex/mcnemar.test.R
 lib/R/library/ctest/R-ex/mood.test.R
+lib/R/library/ctest/R-ex/oneway.test.R
 lib/R/library/ctest/R-ex/pairwise.prop.test.R
 lib/R/library/ctest/R-ex/pairwise.t.test.R
 lib/R/library/ctest/R-ex/pairwise.wilcox.test.R
 lib/R/library/ctest/R-ex/power.prop.test.R
 lib/R/library/ctest/R-ex/power.t.test.R
 lib/R/library/ctest/R-ex/prop.test.R
-lib/R/library/ctest/R-ex/t.test.R
 lib/R/library/ctest/R-ex/prop.trend.test.R
 lib/R/library/ctest/R-ex/quade.test.R
 lib/R/library/ctest/R-ex/shapiro.test.R
+lib/R/library/ctest/R-ex/t.test.R
 lib/R/library/ctest/R-ex/var.test.R
 lib/R/library/ctest/R-ex/ansari.test.R
 lib/R/library/ctest/latex/wilcox.test.tex
@@ -269,6 +374,7 @@ lib/R/library/ctest/latex/ks.test.tex
 lib/R/library/ctest/latex/mantelhaen.test.tex
 lib/R/library/ctest/latex/mcnemar.test.tex
 lib/R/library/ctest/latex/mood.test.tex
+lib/R/library/ctest/latex/oneway.test.tex
 lib/R/library/ctest/latex/pairwise.prop.test.tex
 lib/R/library/ctest/latex/pairwise.t.test.tex
 lib/R/library/ctest/latex/pairwise.table.tex
@@ -298,11 +404,12 @@ lib/R/library/ctest/html/ks.test.html
 lib/R/library/ctest/html/mantelhaen.test.html
 lib/R/library/ctest/html/mcnemar.test.html
 lib/R/library/ctest/html/mood.test.html
+lib/R/library/ctest/html/oneway.test.html
 lib/R/library/ctest/html/pairwise.prop.test.html
 lib/R/library/ctest/html/pairwise.t.test.html
-lib/R/library/ctest/html/pairwise.table.html
 lib/R/library/ctest/html/t.test.html
 lib/R/library/ctest/html/prop.test.html
+lib/R/library/ctest/html/pairwise.table.html
 lib/R/library/ctest/html/pairwise.wilcox.test.html
 lib/R/library/ctest/html/power.prop.test.html
 lib/R/library/ctest/html/power.t.test.html
@@ -315,7 +422,6 @@ lib/R/library/ctest/html/var.test.html
 lib/R/library/ctest/html/00Index.html
 lib/R/library/ctest/libs/ctest.so
 lib/R/library/ctest/help/wilcox.test
-lib/R/library/ctest/help/00Titles
 lib/R/library/ctest/help/ansari.test
 lib/R/library/ctest/help/bartlett.test
 lib/R/library/ctest/help/binom.test
@@ -329,6 +435,7 @@ lib/R/library/ctest/help/ks.test
 lib/R/library/ctest/help/mantelhaen.test
 lib/R/library/ctest/help/mcnemar.test
 lib/R/library/ctest/help/mood.test
+lib/R/library/ctest/help/oneway.test
 lib/R/library/ctest/help/pairwise.prop.test
 lib/R/library/ctest/help/pairwise.t.test
 lib/R/library/ctest/help/pairwise.table
@@ -348,7 +455,10 @@ lib/R/library/ctest/DESCRIPTION
 lib/R/library/ctest/TITLE
 lib/R/library/ctest/INDEX
 lib/R/library/ctest/CONTENTS
-lib/R/library/eda/R/eda
+lib/R/library/eda/help/AnIndex
+lib/R/library/eda/help/line
+lib/R/library/eda/help/medpolish
+lib/R/library/eda/help/smooth
 lib/R/library/eda/R-ex/line.R
 lib/R/library/eda/R-ex/medpolish.R
 lib/R/library/eda/R-ex/smooth.R
@@ -359,12 +469,10 @@ lib/R/library/eda/html/00Index.html
 lib/R/library/eda/html/line.html
 lib/R/library/eda/html/medpolish.html
 lib/R/library/eda/html/smooth.html
+lib/R/library/eda/demo/00Index
+lib/R/library/eda/demo/smooth.R
+lib/R/library/eda/R/eda
 lib/R/library/eda/libs/eda.so
-lib/R/library/eda/help/AnIndex
-lib/R/library/eda/help/00Titles
-lib/R/library/eda/help/line
-lib/R/library/eda/help/medpolish
-lib/R/library/eda/help/smooth
 lib/R/library/eda/DESCRIPTION
 lib/R/library/eda/TITLE
 lib/R/library/eda/INDEX
@@ -382,7 +490,6 @@ lib/R/library/lqs/html/lqs.html
 lib/R/library/lqs/html/predict.lqs.html
 lib/R/library/lqs/libs/lqs.so
 lib/R/library/lqs/help/AnIndex
-lib/R/library/lqs/help/00Titles
 lib/R/library/lqs/help/cov.rob
 lib/R/library/lqs/help/lqs
 lib/R/library/lqs/help/predict.lqs
@@ -426,7 +533,6 @@ lib/R/library/modreg/html/scatter.smooth.html
 lib/R/library/modreg/html/smooth.spline.html
 lib/R/library/modreg/html/00Index.html
 lib/R/library/modreg/help/supsmu
-lib/R/library/modreg/help/00Titles
 lib/R/library/modreg/help/ksmooth
 lib/R/library/modreg/help/loess
 lib/R/library/modreg/help/loess.control
@@ -448,7 +554,6 @@ lib/R/library/modreg/INDEX
 lib/R/library/modreg/COPYRIGHTS
 lib/R/library/modreg/CONTENTS
 lib/R/library/mva/help/varimax
-lib/R/library/mva/help/00Titles
 lib/R/library/mva/help/Harman23.cor
 lib/R/library/mva/help/Harman74.cor
 lib/R/library/mva/help/ability.cov
@@ -464,9 +569,12 @@ lib/R/library/mva/help/factanal
 lib/R/library/mva/help/hclust
 lib/R/library/mva/help/identify.hclust
 lib/R/library/mva/help/kmeans
+lib/R/library/mva/help/loadings
 lib/R/library/mva/help/prcomp
 lib/R/library/mva/help/princomp
 lib/R/library/mva/help/rect.hclust
+lib/R/library/mva/help/screeplot
+lib/R/library/mva/help/summary.princomp
 lib/R/library/mva/help/AnIndex
 lib/R/library/mva/R-ex/varimax.R
 lib/R/library/mva/R-ex/Harman74.cor.R
@@ -485,8 +593,10 @@ lib/R/library/mva/R-ex/kmeans.R
 lib/R/library/mva/R-ex/prcomp.R
 lib/R/library/mva/R-ex/princomp.R
 lib/R/library/mva/R-ex/rect.hclust.R
+lib/R/library/mva/R-ex/screeplot.R
+lib/R/library/mva/R-ex/summary.princomp.R
 lib/R/library/mva/R-ex/Harman23.cor.R
-lib/R/library/mva/latex/varimax.tex
+lib/R/library/mva/latex/summary.princomp.tex
 lib/R/library/mva/latex/Harman74.cor.tex
 lib/R/library/mva/latex/ability.cov.tex
 lib/R/library/mva/latex/as.hclust.tex
@@ -501,9 +611,12 @@ lib/R/library/mva/latex/factanal.tex
 lib/R/library/mva/latex/hclust.tex
 lib/R/library/mva/latex/identify.hclust.tex
 lib/R/library/mva/latex/kmeans.tex
+lib/R/library/mva/latex/loadings.tex
 lib/R/library/mva/latex/prcomp.tex
 lib/R/library/mva/latex/princomp.tex
 lib/R/library/mva/latex/rect.hclust.tex
+lib/R/library/mva/latex/screeplot.tex
+lib/R/library/mva/latex/varimax.tex
 lib/R/library/mva/latex/Harman23.cor.tex
 lib/R/library/mva/html/varimax.html
 lib/R/library/mva/html/Harman23.cor.html
@@ -521,9 +634,12 @@ lib/R/library/mva/html/factanal.html
 lib/R/library/mva/html/hclust.html
 lib/R/library/mva/html/identify.hclust.html
 lib/R/library/mva/html/kmeans.html
+lib/R/library/mva/html/loadings.html
 lib/R/library/mva/html/prcomp.html
 lib/R/library/mva/html/princomp.html
 lib/R/library/mva/html/rect.hclust.html
+lib/R/library/mva/html/screeplot.html
+lib/R/library/mva/html/summary.princomp.html
 lib/R/library/mva/html/00Index.html
 lib/R/library/mva/data/00Index
 lib/R/library/mva/data/Harman23.cor.R
@@ -535,9 +651,628 @@ lib/R/library/mva/DESCRIPTION
 lib/R/library/mva/TITLE
 lib/R/library/mva/INDEX
 lib/R/library/mva/CONTENTS
-lib/R/library/base/R/base
-lib/R/library/base/R/Rprofile
+lib/R/library/base/help/x11
+lib/R/library/base/help/AIC
+lib/R/library/base/help/AIC.logLik
+lib/R/library/base/help/Arithmetic
+lib/R/library/base/help/Bessel
+lib/R/library/base/help/Beta
+lib/R/library/base/help/Binomial
+lib/R/library/base/help/Cauchy
+lib/R/library/base/help/Chisquare
+lib/R/library/base/help/Comparison
+lib/R/library/base/help/Constants
+lib/R/library/base/help/Control
+lib/R/library/base/help/DateTimeClasses
+lib/R/library/base/help/Defunct
+lib/R/library/base/help/Deprecated
+lib/R/library/base/help/Devices
+lib/R/library/base/help/Exponential
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+lib/R/library/base/help/textconnections
+lib/R/library/base/help/time
+lib/R/library/base/help/title
+lib/R/library/base/help/toString
+lib/R/library/base/help/trace
+lib/R/library/base/help/traceback
+lib/R/library/base/help/transform
+lib/R/library/base/help/trees
+lib/R/library/base/help/try
+lib/R/library/base/help/ts
+lib/R/library/base/help/tsp
+lib/R/library/base/help/typeof
+lib/R/library/base/help/undoc
+lib/R/library/base/help/unique
+lib/R/library/base/help/uniroot
+lib/R/library/base/help/units
+lib/R/library/base/help/unlink
+lib/R/library/base/help/unlist
+lib/R/library/base/help/unname
+lib/R/library/base/help/update
+lib/R/library/base/help/update.formula
+lib/R/library/base/help/update.packages
+lib/R/library/base/help/url.show
+lib/R/library/base/help/uspop
+lib/R/library/base/help/vector
+lib/R/library/base/help/volcano
+lib/R/library/base/help/warning
+lib/R/library/base/help/warnings
+lib/R/library/base/help/warpbreaks
+lib/R/library/base/help/weekday.POSIXt
+lib/R/library/base/help/weighted.mean
+lib/R/library/base/help/weighted.residuals
+lib/R/library/base/help/which
+lib/R/library/base/help/which.min
+lib/R/library/base/help/window
+lib/R/library/base/help/women
+lib/R/library/base/help/write
+lib/R/library/base/help/zC
+lib/R/library/base/help/write.table
+lib/R/library/base/help/writeLines
+lib/R/library/base/help/xfig
+lib/R/library/base/help/xtabs
+lib/R/library/base/help/xy.coords
+lib/R/library/base/help/xyz.coords
+lib/R/library/base/help/zAlias
+lib/R/library/base/help/zMachine
+lib/R/library/base/help/zMethods
+lib/R/library/base/help/zip.file.extract
+lib/R/library/base/help/BATCH
+lib/R/library/base/help/COMPILE
+lib/R/library/base/help/INSTALL
+lib/R/library/base/help/LINK
+lib/R/library/base/help/REMOVE
+lib/R/library/base/help/RHOME
+lib/R/library/base/help/Rprof
+lib/R/library/base/help/SHLIB
+lib/R/library/base/help/Signals
+lib/R/library/base/help/gnome
+lib/R/library/base/help/gtk
+lib/R/library/base/help/png
+lib/R/library/base/help/AnIndex
 lib/R/library/base/R-ex/png.R
+lib/R/library/base/R-ex/Arithmetic.R
 lib/R/library/base/R-ex/Bessel.R
 lib/R/library/base/R-ex/Beta.R
 lib/R/library/base/R-ex/Binomial.R
@@ -559,8 +1294,8 @@ lib/R/library/base/R-ex/Hershey.R
 lib/R/library/base/R-ex/Hyperbolic.R
 lib/R/library/base/R-ex/Hypergeometric.R
 lib/R/library/base/R-ex/IQR.R
-lib/R/library/base/R-ex/Japanese.R
 lib/R/library/base/R-ex/InsectSprays.R
+lib/R/library/base/R-ex/Japanese.R
 lib/R/library/base/R-ex/Last.value.R
 lib/R/library/base/R-ex/LifeCycleSavings.R
 lib/R/library/base/R-ex/Log.R
@@ -583,6 +1318,7 @@ lib/R/library/base/R-ex/Random-user.R
 lib/R/library/base/R-ex/Random.R
 lib/R/library/base/R-ex/Recall.R
 lib/R/library/base/R-ex/Round.R
+lib/R/library/base/R-ex/Script.R
 lib/R/library/base/R-ex/SignRank.R
 lib/R/library/base/R-ex/Special.R
 lib/R/library/base/R-ex/Sys.info.R
@@ -607,8 +1343,8 @@ lib/R/library/base/R-ex/abline.R
 lib/R/library/base/R-ex/add1.R
 lib/R/library/base/R-ex/aggregate.R
 lib/R/library/base/R-ex/airmiles.R
-lib/R/library/base/R-ex/airquality.R
 lib/R/library/base/R-ex/alias.R
+lib/R/library/base/R-ex/airquality.R
 lib/R/library/base/R-ex/all.R
 lib/R/library/base/R-ex/all.equal.R
 lib/R/library/base/R-ex/allnames.R
@@ -636,26 +1372,31 @@ lib/R/library/base/R-ex/attr.R
 lib/R/library/base/R-ex/attributes.R
 lib/R/library/base/R-ex/autoload.R
 lib/R/library/base/R-ex/ave.R
-lib/R/library/base/R-ex/c.R
 lib/R/library/base/R-ex/axis.POSIXct.R
 lib/R/library/base/R-ex/axis.R
 lib/R/library/base/R-ex/backsolve.R
 lib/R/library/base/R-ex/barplot.R
+lib/R/library/base/R-ex/birthday.R
 lib/R/library/base/R-ex/body.R
 lib/R/library/base/R-ex/box.R
 lib/R/library/base/R-ex/boxplot.R
+lib/R/library/base/R-ex/boxplot.formula.R
 lib/R/library/base/R-ex/boxplot.stats.R
 lib/R/library/base/R-ex/bxp.R
 lib/R/library/base/R-ex/by.R
+lib/R/library/base/R-ex/c.R
 lib/R/library/base/R-ex/call.R
+lib/R/library/base/R-ex/capabilities.R
 lib/R/library/base/R-ex/cars.R
 lib/R/library/base/R-ex/case.names.R
 lib/R/library/base/R-ex/cat.R
 lib/R/library/base/R-ex/cbind.R
 lib/R/library/base/R-ex/char.expand.R
+lib/R/library/base/R-ex/character.R
 lib/R/library/base/R-ex/charmatch.R
 lib/R/library/base/R-ex/chartr.R
 lib/R/library/base/R-ex/check.options.R
+lib/R/library/base/R-ex/checkFF.R
 lib/R/library/base/R-ex/chickwts.R
 lib/R/library/base/R-ex/chol.R
 lib/R/library/base/R-ex/chol2inv.R
@@ -665,6 +1406,7 @@ lib/R/library/base/R-ex/co2.R
 lib/R/library/base/R-ex/codes.R
 lib/R/library/base/R-ex/coefficients.R
 lib/R/library/base/R-ex/col.R
+lib/R/library/base/R-ex/col2rgb.R
 lib/R/library/base/R-ex/colnames.R
 lib/R/library/base/R-ex/colors.R
 lib/R/library/base/R-ex/commandArgs.R
@@ -676,19 +1418,23 @@ lib/R/library/base/R-ex/connections.R
 lib/R/library/base/R-ex/contour.R
 lib/R/library/base/R-ex/contrast.R
 lib/R/library/base/R-ex/contrasts.R
+lib/R/library/base/R-ex/converters.R
 lib/R/library/base/R-ex/convolve.R
 lib/R/library/base/R-ex/coplot.R
+lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/cor.R
 lib/R/library/base/R-ex/count.fields.R
 lib/R/library/base/R-ex/crossprod.R
 lib/R/library/base/R-ex/cumsum.R
 lib/R/library/base/R-ex/curve.R
+lib/R/library/base/R-ex/cut.POSIXt.R
 lib/R/library/base/R-ex/cut.R
 lib/R/library/base/R-ex/data.R
 lib/R/library/base/R-ex/data.class.R
 lib/R/library/base/R-ex/data.frame.R
 lib/R/library/base/R-ex/dataentry.R
 lib/R/library/base/R-ex/date.R
+lib/R/library/base/R-ex/dcf.R
 lib/R/library/base/R-ex/debugger.R
 lib/R/library/base/R-ex/delay.R
 lib/R/library/base/R-ex/delete.response.R
@@ -702,11 +1448,12 @@ lib/R/library/base/R-ex/dev.R
 lib/R/library/base/R-ex/dev2.R
 lib/R/library/base/R-ex/diag.R
 lib/R/library/base/R-ex/diff.R
+lib/R/library/base/R-ex/difftime.R
 lib/R/library/base/R-ex/dim.R
 lib/R/library/base/R-ex/dimnames.R
 lib/R/library/base/R-ex/discoveries.R
 lib/R/library/base/R-ex/do.call.R
-lib/R/library/base/R-ex/dotplot.R
+lib/R/library/base/R-ex/dotchart.R
 lib/R/library/base/R-ex/double.R
 lib/R/library/base/R-ex/dput.R
 lib/R/library/base/R-ex/drop.R
@@ -715,8 +1462,8 @@ lib/R/library/base/R-ex/dump.R
 lib/R/library/base/R-ex/duplicated.R
 lib/R/library/base/R-ex/dynload.R
 lib/R/library/base/R-ex/edit.R
-lib/R/library/base/R-ex/eff.aovlist.R
 lib/R/library/base/R-ex/edit.data.frame.R
+lib/R/library/base/R-ex/eff.aovlist.R
 lib/R/library/base/R-ex/effects.R
 lib/R/library/base/R-ex/eigen.R
 lib/R/library/base/R-ex/environment.R
@@ -744,6 +1491,7 @@ lib/R/library/base/R-ex/fix.R
 lib/R/library/base/R-ex/formals.R
 lib/R/library/base/R-ex/format.R
 lib/R/library/base/R-ex/format.info.R
+lib/R/library/base/R-ex/formatDL.R
 lib/R/library/base/R-ex/formatc.R
 lib/R/library/base/R-ex/formula.R
 lib/R/library/base/R-ex/fourfoldplot.R
@@ -758,6 +1506,7 @@ lib/R/library/base/R-ex/getenv.R
 lib/R/library/base/R-ex/getwd.R
 lib/R/library/base/R-ex/gl.R
 lib/R/library/base/R-ex/glm.R
+lib/R/library/base/R-ex/glm.control.R
 lib/R/library/base/R-ex/glm.summaries.R
 lib/R/library/base/R-ex/gray.R
 lib/R/library/base/R-ex/grep.R
@@ -771,10 +1520,11 @@ lib/R/library/base/R-ex/ifelse.R
 lib/R/library/base/R-ex/image.R
 lib/R/library/base/R-ex/infert.R
 lib/R/library/base/R-ex/influence.measures.R
+lib/R/library/base/R-ex/integrate.R
 lib/R/library/base/R-ex/interaction.R
 lib/R/library/base/R-ex/interaction.plot.R
-lib/R/library/base/R-ex/interactive.R
 lib/R/library/base/R-ex/invisible.R
+lib/R/library/base/R-ex/interactive.R
 lib/R/library/base/R-ex/iris.R
 lib/R/library/base/R-ex/is.empty.R
 lib/R/library/base/R-ex/is.finite.R
@@ -790,10 +1540,10 @@ lib/R/library/base/R-ex/lapply.R
 lib/R/library/base/R-ex/layout.R
 lib/R/library/base/R-ex/legend.R
 lib/R/library/base/R-ex/length.R
-lib/R/library/base/R-ex/lines.R
 lib/R/library/base/R-ex/levels.factor.R
 lib/R/library/base/R-ex/library.R
 lib/R/library/base/R-ex/library.dynam.R
+lib/R/library/base/R-ex/lines.R
 lib/R/library/base/R-ex/list.R
 lib/R/library/base/R-ex/list.files.R
 lib/R/library/base/R-ex/lm.R
@@ -803,6 +1553,8 @@ lib/R/library/base/R-ex/lmfit.R
 lib/R/library/base/R-ex/load.R
 lib/R/library/base/R-ex/localeconv.R
 lib/R/library/base/R-ex/locales.R
+lib/R/library/base/R-ex/logLik.R
+lib/R/library/base/R-ex/logLik.lm.R
 lib/R/library/base/R-ex/loglin.R
 lib/R/library/base/R-ex/longley.R
 lib/R/library/base/R-ex/lower.tri.R
@@ -840,9 +1592,9 @@ lib/R/library/base/R-ex/model.frame.R
 lib/R/library/base/R-ex/model.matrix.R
 lib/R/library/base/R-ex/model.tables.R
 lib/R/library/base/R-ex/morley.R
-lib/R/library/base/R-ex/mtext.R
 lib/R/library/base/R-ex/mosaicplot.R
 lib/R/library/base/R-ex/mtcars.R
+lib/R/library/base/R-ex/mtext.R
 lib/R/library/base/R-ex/n2mfrow.R
 lib/R/library/base/R-ex/na.action.R
 lib/R/library/base/R-ex/na.fail.R
@@ -867,6 +1619,7 @@ lib/R/library/base/R-ex/order.R
 lib/R/library/base/R-ex/outer.R
 lib/R/library/base/R-ex/p.adjust.R
 lib/R/library/base/R-ex/package.contents.R
+lib/R/library/base/R-ex/package.skeleton.R
 lib/R/library/base/R-ex/pairs.R
 lib/R/library/base/R-ex/pairs.formula.R
 lib/R/library/base/R-ex/palette.R
@@ -874,7 +1627,6 @@ lib/R/library/base/R-ex/palettes.R
 lib/R/library/base/R-ex/panel.smooth.R
 lib/R/library/base/R-ex/par.R
 lib/R/library/base/R-ex/parse.R
-lib/R/library/base/R-ex/parse.dcf.R
 lib/R/library/base/R-ex/paste.R
 lib/R/library/base/R-ex/persp.R
 lib/R/library/base/R-ex/phones.R
@@ -911,15 +1663,16 @@ lib/R/library/base/R-ex/print.R
 lib/R/library/base/R-ex/print.coefmat.R
 lib/R/library/base/R-ex/print.default.R
 lib/R/library/base/R-ex/print.matrix.R
+lib/R/library/base/R-ex/print.ts.R
 lib/R/library/base/R-ex/proc.time.R
 lib/R/library/base/R-ex/prod.R
 lib/R/library/base/R-ex/proj.R
 lib/R/library/base/R-ex/prompt.R
 lib/R/library/base/R-ex/prop.table.R
 lib/R/library/base/R-ex/pushBack.R
-lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/putenv.R
 lib/R/library/base/R-ex/qqnorm.R
+lib/R/library/base/R-ex/qr.R
 lib/R/library/base/R-ex/qraux.R
 lib/R/library/base/R-ex/quakes.R
 lib/R/library/base/R-ex/quantile.R
@@ -929,7 +1682,6 @@ lib/R/library/base/R-ex/range.R
 lib/R/library/base/R-ex/rank.R
 lib/R/library/base/R-ex/read.fwf.R
 lib/R/library/base/R-ex/read.socket.R
-lib/R/library/base/R-ex/read.table.url.R
 lib/R/library/base/R-ex/readBin.R
 lib/R/library/base/R-ex/readLines.R
 lib/R/library/base/R-ex/readline.R
@@ -939,12 +1691,12 @@ lib/R/library/base/R-ex/rep.R
 lib/R/library/base/R-ex/replications.R
 lib/R/library/base/R-ex/reshapeLong.R
 lib/R/library/base/R-ex/reshapeWide.R
-lib/R/library/base/R-ex/restart.R
 lib/R/library/base/R-ex/rev.R
 lib/R/library/base/R-ex/rgb.R
 lib/R/library/base/R-ex/rle.R
+lib/R/library/base/R-ex/rm.R
+lib/R/library/base/R-ex/round.POSIXt.R
 lib/R/library/base/R-ex/row.R
-lib/R/library/base/R-ex/t.R
 lib/R/library/base/R-ex/rowsum.R
 lib/R/library/base/R-ex/rug.R
 lib/R/library/base/R-ex/sample.R
@@ -956,6 +1708,7 @@ lib/R/library/base/R-ex/sd.R
 lib/R/library/base/R-ex/se.contrast.R
 lib/R/library/base/R-ex/search.R
 lib/R/library/base/R-ex/segments.R
+lib/R/library/base/R-ex/seq.POSIXt.R
 lib/R/library/base/R-ex/seq.R
 lib/R/library/base/R-ex/sequence.R
 lib/R/library/base/R-ex/sets.R
@@ -976,18 +1729,19 @@ lib/R/library/base/R-ex/step.R
 lib/R/library/base/R-ex/stop.R
 lib/R/library/base/R-ex/stopifnot.R
 lib/R/library/base/R-ex/str.R
-lib/R/library/base/R-ex/stripplot.R
+lib/R/library/base/R-ex/svd.R
+lib/R/library/base/R-ex/stripchart.R
 lib/R/library/base/R-ex/strptime.R
 lib/R/library/base/R-ex/strsplit.R
 lib/R/library/base/R-ex/structure.R
 lib/R/library/base/R-ex/strwidth.R
+lib/R/library/base/R-ex/strwrap.R
 lib/R/library/base/R-ex/subset.R
 lib/R/library/base/R-ex/substitute.R
 lib/R/library/base/R-ex/substr.R
 lib/R/library/base/R-ex/summary.R
 lib/R/library/base/R-ex/sunflowerplot.R
 lib/R/library/base/R-ex/sunspots.R
-lib/R/library/base/R-ex/svd.R
 lib/R/library/base/R-ex/sweep.R
 lib/R/library/base/R-ex/swiss.R
 lib/R/library/base/R-ex/switch.R
@@ -998,11 +1752,11 @@ lib/R/library/base/R-ex/system.R
 lib/R/library/base/R-ex/system.file.R
 lib/R/library/base/R-ex/system.time.R
 lib/R/library/base/R-ex/table.R
-lib/R/library/base/R-ex/text.R
 lib/R/library/base/R-ex/tabulate.R
 lib/R/library/base/R-ex/tapply.R
 lib/R/library/base/R-ex/tempfile.R
 lib/R/library/base/R-ex/termplot.R
+lib/R/library/base/R-ex/text.R
 lib/R/library/base/R-ex/textconnections.R
 lib/R/library/base/R-ex/time.R
 lib/R/library/base/R-ex/title.R
@@ -1011,6 +1765,7 @@ lib/R/library/base/R-ex/trace.R
 lib/R/library/base/R-ex/traceback.R
 lib/R/library/base/R-ex/transform.R
 lib/R/library/base/R-ex/trees.R
+lib/R/library/base/R-ex/try.R
 lib/R/library/base/R-ex/ts.R
 lib/R/library/base/R-ex/typeof.R
 lib/R/library/base/R-ex/undoc.R
@@ -1021,15 +1776,17 @@ lib/R/library/base/R-ex/unlist.R
 lib/R/library/base/R-ex/unname.R
 lib/R/library/base/R-ex/update.R
 lib/R/library/base/R-ex/update.formula.R
+lib/R/library/base/R-ex/url.show.R
 lib/R/library/base/R-ex/uspop.R
 lib/R/library/base/R-ex/vector.R
 lib/R/library/base/R-ex/volcano.R
 lib/R/library/base/R-ex/warning.R
+lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/warnings.R
 lib/R/library/base/R-ex/warpbreaks.R
+lib/R/library/base/R-ex/weekday.POSIXt.R
 lib/R/library/base/R-ex/weighted.mean.R
 lib/R/library/base/R-ex/weighted.residuals.R
-lib/R/library/base/R-ex/which.R
 lib/R/library/base/R-ex/which.min.R
 lib/R/library/base/R-ex/window.R
 lib/R/library/base/R-ex/women.R
@@ -1044,8 +1801,10 @@ lib/R/library/base/R-ex/zMachine.R
 lib/R/library/base/R-ex/zMethods.R
 lib/R/library/base/R-ex/Rprof.R
 lib/R/library/base/R-ex/gnome.R
-lib/R/library/base/R-ex/Arithmetic.R
+lib/R/library/base/R-ex/AIC.R
 lib/R/library/base/latex/x11.tex
+lib/R/library/base/latex/AIC.logLik.tex
+lib/R/library/base/latex/Arithmetic.tex
 lib/R/library/base/latex/Bessel.tex
 lib/R/library/base/latex/Beta.tex
 lib/R/library/base/latex/Binomial.tex
@@ -1064,9 +1823,9 @@ lib/R/library/base/latex/Extremes.tex
 lib/R/library/base/latex/FDist.tex
 lib/R/library/base/latex/Foreign.tex
 lib/R/library/base/latex/Formaldehyde.tex
+lib/R/library/base/latex/Hershey.tex
 lib/R/library/base/latex/GammaDist.tex
 lib/R/library/base/latex/Geometric.tex
-lib/R/library/base/latex/Hershey.tex
 lib/R/library/base/latex/HairEyeColor.tex
 lib/R/library/base/latex/Hyperbolic.tex
 lib/R/library/base/latex/Hypergeometric.tex
@@ -1099,6 +1858,7 @@ lib/R/library/base/latex/RdUtils.tex
 lib/R/library/base/latex/Recall.tex
 lib/R/library/base/latex/Rhome.tex
 lib/R/library/base/latex/Round.tex
+lib/R/library/base/latex/Script.tex
 lib/R/library/base/latex/SignRank.tex
 lib/R/library/base/latex/Special.tex
 lib/R/library/base/latex/Startup.tex
@@ -1158,9 +1918,11 @@ lib/R/library/base/latex/axis.POSIXct.tex
 lib/R/library/base/latex/axis.tex
 lib/R/library/base/latex/backsolve.tex
 lib/R/library/base/latex/barplot.tex
+lib/R/library/base/latex/birthday.tex
 lib/R/library/base/latex/body.tex
 lib/R/library/base/latex/box.tex
 lib/R/library/base/latex/boxplot.tex
+lib/R/library/base/latex/boxplot.formula.tex
 lib/R/library/base/latex/boxplot.stats.tex
 lib/R/library/base/latex/browser.tex
 lib/R/library/base/latex/bug.report.tex
@@ -1169,15 +1931,17 @@ lib/R/library/base/latex/bxp.tex
 lib/R/library/base/latex/by.tex
 lib/R/library/base/latex/c.tex
 lib/R/library/base/latex/call.tex
+lib/R/library/base/latex/capabilities.tex
 lib/R/library/base/latex/cars.tex
 lib/R/library/base/latex/case.names.tex
 lib/R/library/base/latex/cat.tex
 lib/R/library/base/latex/cbind.tex
 lib/R/library/base/latex/char.expand.tex
 lib/R/library/base/latex/character.tex
-lib/R/library/base/latex/charmatch.tex
 lib/R/library/base/latex/chartr.tex
+lib/R/library/base/latex/charmatch.tex
 lib/R/library/base/latex/check.options.tex
+lib/R/library/base/latex/checkFF.tex
 lib/R/library/base/latex/chickwts.tex
 lib/R/library/base/latex/chol.tex
 lib/R/library/base/latex/chol2inv.tex
@@ -1189,6 +1953,7 @@ lib/R/library/base/latex/codes.tex
 lib/R/library/base/latex/codoc.tex
 lib/R/library/base/latex/coefficients.tex
 lib/R/library/base/latex/col.tex
+lib/R/library/base/latex/col2rgb.tex
 lib/R/library/base/latex/colnames.tex
 lib/R/library/base/latex/colors.tex
 lib/R/library/base/latex/commandArgs.tex
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 lib/R/library/base/html/interaction.plot.html
 lib/R/library/base/html/interactive.html
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 lib/R/library/base/html/lm.summaries.html
 lib/R/library/base/html/lmfit.html
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 lib/R/library/base/html/locales.html
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 lib/R/library/base/html/logical.html
 lib/R/library/base/html/loglin.html
 lib/R/library/base/html/longley.html
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 lib/R/library/base/html/mat.or.vec.html
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 lib/R/library/base/html/match.fun.html
 lib/R/library/base/html/matmult.html
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 lib/R/library/base/html/max.col.html
 lib/R/library/base/html/mean.html
 lib/R/library/base/html/median.html
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 lib/R/library/base/html/mtcars.html
 lib/R/library/base/html/mtext.html
 lib/R/library/base/html/n2mfrow.html
 lib/R/library/base/html/na.action.html
 lib/R/library/base/html/na.fail.html
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 lib/R/library/base/html/name.html
 lib/R/library/base/html/names.html
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 lib/R/library/base/html/nargs.html
 lib/R/library/base/html/nchar.html
 lib/R/library/base/html/nextn.html
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 lib/R/library/base/html/p.adjust.html
 lib/R/library/base/html/package.contents.html
 lib/R/library/base/html/package.dependencies.html
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 lib/R/library/base/html/page.html
 lib/R/library/base/html/pairs.html
 lib/R/library/base/html/pairs.formula.html
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 lib/R/library/base/html/paste.html
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 lib/R/library/base/html/phones.html
 lib/R/library/base/html/pictex.html
 lib/R/library/base/html/piechart.html
 lib/R/library/base/html/plot.html
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 lib/R/library/base/html/plot.lm.html
 lib/R/library/base/html/plot.table.html
 lib/R/library/base/html/plot.ts.html
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 lib/R/library/base/html/print.matrix.html
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 lib/R/library/base/html/proc.time.html
 lib/R/library/base/html/prod.html
 lib/R/library/base/html/profile.html
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 lib/R/library/base/html/quakes.html
 lib/R/library/base/html/quantile.html
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 lib/R/library/base/html/randu.html
 lib/R/library/base/html/range.html
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 lib/R/library/base/html/readline.html
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 lib/R/library/base/html/rev.html
 lib/R/library/base/html/rgb.html
 lib/R/library/base/html/rivers.html
 lib/R/library/base/html/rle.html
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 lib/R/library/base/html/row.html
 lib/R/library/base/html/rowsum.html
 lib/R/library/base/html/rug.html
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 lib/R/library/base/html/sets.html
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 lib/R/library/base/html/showConnections.html
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 lib/R/library/base/html/sign.html
 lib/R/library/base/html/sink.html
 lib/R/library/base/html/sleep.html
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 lib/R/library/base/html/stopifnot.html
 lib/R/library/base/html/str.html
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 lib/R/library/base/html/strsplit.html
 lib/R/library/base/html/structure.html
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 lib/R/library/base/html/strwidth.html
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 lib/R/library/base/html/substitute.html
 lib/R/library/base/html/substr.html
 lib/R/library/base/html/sum.html
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 lib/R/library/base/html/system.html
 lib/R/library/base/html/system.file.html
 lib/R/library/base/html/system.time.html
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 lib/R/library/base/html/table.html
 lib/R/library/base/html/tabulate.html
 lib/R/library/base/html/tapply.html
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 lib/R/library/base/html/traceback.html
 lib/R/library/base/html/transform.html
 lib/R/library/base/html/trees.html
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 lib/R/library/base/html/ts.html
 lib/R/library/base/html/tsp.html
 lib/R/library/base/html/typeof.html
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 lib/R/library/base/html/update.formula.html
 lib/R/library/base/html/update.packages.html
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 lib/R/library/base/html/vector.html
 lib/R/library/base/html/volcano.html
 lib/R/library/base/html/warning.html
 lib/R/library/base/html/warnings.html
 lib/R/library/base/html/warpbreaks.html
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 lib/R/library/base/html/weighted.mean.html
 lib/R/library/base/html/weighted.residuals.html
 lib/R/library/base/html/which.html
 lib/R/library/base/html/which.min.html
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 lib/R/library/base/html/window.html
 lib/R/library/base/html/women.html
 lib/R/library/base/html/write.html
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 lib/R/library/ts/R-ex/spec.pgram.R
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 lib/R/library/ts/latex/toeplitz.tex
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 lib/R/library/ts/html/spectrum.html
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 lib/R/library/ts/html/sunspot.html
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 lib/R/library/ts/help/EuStockMarkets
 lib/R/library/ts/help/LakeHuron
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 lib/R/library/ts/help/toeplitz
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 lib/R/library/tcltk/R-ex/TkCommands.R
 lib/R/library/tcltk/R-ex/TkWidgetcmds.R
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 lib/R/library/tcltk/html/TkWidgetcmds.html
 lib/R/library/tcltk/html/TkWidgets.html
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 lib/R/library/tcltk/exec/pkgIndex.tcl
 lib/R/library/tcltk/exec/util-dump.tcl
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 lib/R/library/tcltk/exec/util-tk.tcl
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-@dirrm lib/R/share/perl/Text
-@dirrm lib/R/share/perl/R
-@dirrm lib/R/share/perl
-@dirrm lib/R/share
-@dirrm lib/R/etc
-@dirrm lib/R/doc/manual
-@dirrm lib/R/doc/html/search
-@dirrm lib/R/doc/html
-@dirrm lib/R/doc
-@dirrm lib/R/demos/tcltk
-@dirrm lib/R/demos/nlm
-@dirrm lib/R/demos/models
-@dirrm lib/R/demos/language
-@dirrm lib/R/demos/graphics
-@dirrm lib/R/demos
-@dirrm lib/R/afm
-@dirrm lib/R/library/tcltk/help
 @dirrm lib/R/library/tcltk/exec
+@dirrm lib/R/library/tcltk/R
+@dirrm lib/R/library/tcltk/demo
 @dirrm lib/R/library/tcltk/html
 @dirrm lib/R/library/tcltk/latex
 @dirrm lib/R/library/tcltk/R-ex
-@dirrm lib/R/library/tcltk/R
+@dirrm lib/R/library/tcltk/help
 @dirrm lib/R/library/tcltk
 @dirrm lib/R/library/ts/libs
 @dirrm lib/R/library/ts/data
@@ -3308,12 +3440,13 @@ lib/R/THANKS
 @dirrm lib/R/library/splines/R-ex
 @dirrm lib/R/library/splines/R
 @dirrm lib/R/library/splines
-@dirrm lib/R/library/base/help
+@dirrm lib/R/library/base/demo
+@dirrm lib/R/library/base/R
 @dirrm lib/R/library/base/data
 @dirrm lib/R/library/base/html
 @dirrm lib/R/library/base/latex
 @dirrm lib/R/library/base/R-ex
-@dirrm lib/R/library/base/R
+@dirrm lib/R/library/base/help
 @dirrm lib/R/library/base
 @dirrm lib/R/library/mva/libs
 @dirrm lib/R/library/mva/R
@@ -3338,12 +3471,13 @@ lib/R/THANKS
 @dirrm lib/R/library/lqs/R-ex
 @dirrm lib/R/library/lqs/R
 @dirrm lib/R/library/lqs
-@dirrm lib/R/library/eda/help
 @dirrm lib/R/library/eda/libs
+@dirrm lib/R/library/eda/R
+@dirrm lib/R/library/eda/demo
 @dirrm lib/R/library/eda/html
 @dirrm lib/R/library/eda/latex
 @dirrm lib/R/library/eda/R-ex
-@dirrm lib/R/library/eda/R
+@dirrm lib/R/library/eda/help
 @dirrm lib/R/library/eda
 @dirrm lib/R/library/ctest/help
 @dirrm lib/R/library/ctest/libs
@@ -3361,7 +3495,21 @@ lib/R/THANKS
 @dirrm lib/R/library/nls/help
 @dirrm lib/R/library/nls
 @dirrm lib/R/library
+@dirrm lib/R/modules
 @dirrm lib/R/include/R_ext
 @dirrm lib/R/include
 @dirrm lib/R/bin
+@dirrm lib/R/share/texmf
+@dirrm lib/R/share/sh
+@dirrm lib/R/share/perl/Text
+@dirrm lib/R/share/perl/R
+@dirrm lib/R/share/perl
+@dirrm lib/R/share/make
+@dirrm lib/R/share
+@dirrm lib/R/etc
+@dirrm lib/R/doc/manual
+@dirrm lib/R/doc/html/search
+@dirrm lib/R/doc/html
+@dirrm lib/R/doc
+@dirrm lib/R/afm
 @dirrm lib/R