Import of R, a language for mathematical programming.

PR:		6503
Submitted by:	Maurice Castro <maurice@planetoid.serc.rmit.edu.au>

6 files changed, 1134 insertions, 0 deletions

diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile
new file mode 100644
index 000000000000..ac1cd756e4ed
--- /dev/null
+++ b/math/R-letter/Makefile
@@ -0,0 +1,61 @@
+# New ports collection makefile for:   R
+# Version required:    R-0.61.2
+# Date created:                Mon May  4 10:03:02 EST 1998
+# Whom:                        Maurice Castro <maurice@serc.rmit.edu.au>
+#
+# $Id$
+#
+
+DISTNAME=	R-0.61.2
+PKGNAME=	r-${PAPERSIZE:S/A4/a4/:S/LETTER/letter/:S/Letter/letter/}-0.61.2
+CATEGORIES=	math
+MASTER_SITES=	http://lib.stat.cmu.edu/R/CRAN/src/base/ \
+		ftp://ftp.stat.math.ethz.ch/R/ \
+		ftp://ftp.u-aizu.ac.jp/pub/lang/R/
+EXTRACT_SUFX=	.tgz
+
+MAINTAINER=	maurice@serc.rmit.edu.au
+
+GNU_CONFIGURE=	yes
+USE_PERL5=	yes
+
+MANUAL_PACKAGE_BUILD=	PAPERSIZE has to be set to Letter A4
+CONFIGURE_ENV=		R_PAPERSIZE=${PAPERSIZE}
+
+.if !defined(PAPERSIZE)
+PAPERSIZE=a4
+.elif ${PAPERSIZE} == LETTER || ${PAPERSIZE} == Letter
+PAPERSIZE=letter
+.elif ${PAPERSIZE} == A4
+PAPERSIZE=a4
+.elif ${PAPERSIZE} != a4 && ${PAPERSIZE} != letter
+PAPERSIZE_INVALID=yes
+.endif
+
+pre-fetch:
+.if defined(PAPERSIZE_INVALID)
+	@${ECHO} "Invalid value for PAPERSIZE: \"${PAPERSIZE}\""
+	@${ECHO} "Possible values are:  A4 (default), and Letter."
+	@${FALSE}
+.endif
+
+post-configure:
+	cd ${WRKSRC}/etc; && ${PREFIX}/bin/perl -pi -e "s#/usr/bin/perl#${PREFIX}/bin/perl#" `grep -l /usr/bin/perl *`
+
+do-install:
+	${SED} 's:PREFIX:${PREFIX}:' ${FILESDIR}/R > ${PREFIX}/bin/R
+	(cd ${WRKSRC}; find . -type d -exec chmod a+rx \{\} \; )
+	(cd ${WRKSRC}; find . -type f -exec chmod a+r \{\} \; )
+	chmod a+x ${PREFIX}/bin/R
+	${MKDIR} ${PREFIX}/share/R
+	${MKDIR} ${PREFIX}/share/R/bin
+	${INSTALL_PROGRAM} ${WRKSRC}/bin/R.binary ${PREFIX}/share/R/bin
+	(cd ${WRKSRC}; tar cpf - afm ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - etc ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - html ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - include ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - library ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - demos ) | (cd ${PREFIX}/share/R; tar xpf - )
+	(cd ${WRKSRC}; tar cpf - cmd ) | (cd ${PREFIX}/share/R; tar xpf - )
+
+.include <bsd.port.mk>
diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo
new file mode 100644
index 000000000000..ba224df45cc2
--- /dev/null
+++ b/math/R-letter/distinfo
@@ -0,0 +1 @@
+MD5 (R-0.61.2.tgz) = 9f73cc9af346f17e49355bd24568331b
diff --git a/math/R-letter/files/R b/math/R-letter/files/R
new file mode 100644
index 000000000000..493f41b35183
--- /dev/null
+++ b/math/R-letter/files/R
@@ -0,0 +1,69 @@
+#!/bin/sh
+# Shell wrapper for R executable.
+# Just sets a few environment items
+
+RHOME=PREFIX/share/R
+export RHOME
+
+if [ "$1" = "RHOME" ]
+then
+	echo $RHOME; exit 0
+fi
+    
+if [ "$1" = "SHLIB" ]
+then
+	shift
+	exec sh $RHOME/etc/SHLIB $*
+fi
+
+if [ "$1" = "COMPILE" ]
+then
+	shift
+	exec sh $RHOME/etc/COMPILE $*
+fi
+
+if [ "$1" = "INSTALL" ]
+then
+        shift
+        exec sh $RHOME/etc/INSTALL $*
+fi
+
+if [ "$1" = "REMOVE" ]
+then
+        shift
+        exec sh $RHOME/etc/REMOVE $*
+fi
+
+if [ "$1" = -xxgdb ]
+then
+	shift
+	DEBUGGER=xxgdb
+fi
+
+if [ "$1" = -gdb ]
+then
+	shift
+	DEBUGGER=gdb
+fi
+
+# Default Printer Paper Size
+# Choose one of the following
+# R_PAPERSIZE="a4"
+# R_PAPERSIZE="letter"
+# R_PAPERSIZE="none"
+R_PAPERSIZE=a4
+export R_PAPERSIZE
+
+# Default Print Command
+# Choose one of the following
+# R_PRINTCMD="lpr"
+# R_PRINTCMD="lp"
+R_PRINTCMD=lpr
+export R_PRINTCMD
+
+if [ $DEBUGGER ]
+then
+	exec $DEBUGGER $RHOME/bin/R.binary 
+else
+	exec $RHOME/bin/R.binary  $*
+fi
diff --git a/math/R-letter/pkg-comment b/math/R-letter/pkg-comment
new file mode 100644
index 000000000000..3ecd74658b4d
--- /dev/null
+++ b/math/R-letter/pkg-comment
@@ -0,0 +1 @@
+R a language for statistics similar to AT&T's S
diff --git a/math/R-letter/pkg-descr b/math/R-letter/pkg-descr
new file mode 100644
index 000000000000..89b251a71ba2
--- /dev/null
+++ b/math/R-letter/pkg-descr
@@ -0,0 +1,12 @@
+R is a language which is not entirely unlike the S language developed
+at AT&T Bell Laboratories by Rick Becker, John Chambers and Allan
+Wilks.
+
+R is free software distributed under a GNU-style copyleft.
+
+This port has  most of the functionality in the first S book (the
+"Blue Book") and many of the applications.  In addition, a certain
+amount of functionality from the second S book (the "White Book")
+has been implemented.  In particular functioning versions of "lm"
+and "glm" and their associated "summary" and "anova" methods  are
+provided.
diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist
new file mode 100644
index 000000000000..d1bc257c43fd
--- /dev/null
+++ b/math/R-letter/pkg-plist
@@ -0,0 +1,990 @@
+@exec mkdir %D/share/R
+@exec mkdir %D/share/R/bin
+@exec mkdir %D/share/R/afm
+@exec mkdir %D/share/R/etc
+@exec mkdir %D/share/R/etc/older-stuff
+@exec mkdir %D/share/R/etc/undoc
+@exec mkdir %D/share/R/html
+@exec mkdir %D/share/R/html/tech
+@exec mkdir %D/share/R/html/test
+@exec mkdir %D/share/R/include
+@exec mkdir %D/share/R/library
+@exec mkdir %D/share/R/library/base
+@exec mkdir %D/share/R/library/base/R
+@exec mkdir %D/share/R/library/base/data
+@exec mkdir %D/share/R/library/base/help
+@exec mkdir %D/share/R/library/base/html
+@exec mkdir %D/share/R/library/eda
+@exec mkdir %D/share/R/library/eda/libs
+@exec mkdir %D/share/R/library/eda/R
+@exec mkdir %D/share/R/library/eda/help
+@exec mkdir %D/share/R/library/eda/html
+@exec mkdir %D/share/R/library/mva
+@exec mkdir %D/share/R/library/mva/libs
+@exec mkdir %D/share/R/library/mva/R
+@exec mkdir %D/share/R/library/mva/help
+@exec mkdir %D/share/R/library/mva/html
+@exec mkdir %D/share/R/library/stepfun
+@exec mkdir %D/share/R/library/stepfun/R
+@exec mkdir %D/share/R/library/stepfun/help
+@exec mkdir %D/share/R/library/stepfun/html
+@exec mkdir %D/share/R/demos
+@exec mkdir %D/share/R/demos/dynload
+@exec mkdir %D/share/R/demos/graphics
+@exec mkdir %D/share/R/demos/language
+@exec mkdir %D/share/R/demos/models
+@exec mkdir %D/share/R/demos/nlm
+@exec mkdir %D/share/R/cmd
+bin/R
+share/R/bin/R.binary
+share/R/afm/AvantB
+share/R/afm/AvantBO
+share/R/afm/AvantD
+share/R/afm/AvantDO
+share/R/afm/BookD
+share/R/afm/BookDI
+share/R/afm/BookL
+share/R/afm/BookLI
+share/R/afm/Cour
+share/R/afm/CourB
+share/R/afm/CourBO
+share/R/afm/CourO
+share/R/afm/Helv
+share/R/afm/HelvB
+share/R/afm/HelvBO
+share/R/afm/HelvN
+share/R/afm/HelvNB
+share/R/afm/HelvNBO
+share/R/afm/HelvNO
+share/R/afm/HelvO
+share/R/afm/NCSchlB
+share/R/afm/NCSchlBI
+share/R/afm/NCSchlI
+share/R/afm/NCSchlR
+share/R/afm/PalatB
+share/R/afm/PalatBI
+share/R/afm/PalatI
+share/R/afm/PalatO
+share/R/afm/PalatR
+share/R/afm/Symbol
+share/R/afm/TimesB
+share/R/afm/TimesBI
+share/R/afm/TimesI
+share/R/afm/TimesO
+share/R/afm/TimesR
+share/R/afm/ZapfCMI
+share/R/afm/ZapfD
+share/R/etc/COMPILE.in
+share/R/etc/INSTALL.in
+share/R/etc/Makefile
+share/R/etc/Makefile-test-Ex
+share/R/etc/REMOVE.in
+share/R/etc/Rd.files
+share/R/etc/Rd2dvi
+share/R/etc/Rd2txt
+share/R/etc/Rdconv.in
+share/R/etc/Rdindex.in
+share/R/etc/Rdconvlib.pl
+share/R/etc/SHLIB.in
+share/R/etc/Rman2Rd.in
+share/R/etc/Sd2Rd.in
+share/R/etc/build-alldocs
+share/R/etc/build-allhelp
+share/R/etc/build-allhtml
+share/R/etc/build-alllatex
+share/R/etc/colors.big
+share/R/etc/build-help.in
+share/R/etc/build-htmlpkglist.in
+share/R/etc/buildlib.pl
+share/R/etc/colors.small
+share/R/etc/config.sub
+share/R/etc/config.guess
+share/R/etc/help.pretty.in
+share/R/etc/html2dos.in
+share/R/etc/tasks
+share/R/etc/install-sh
+share/R/etc/massage-Examples
+share/R/etc/test-things.Rd
+share/R/etc/older-stuff/doc2EX
+share/R/etc/older-stuff/doc2dvi
+share/R/etc/older-stuff/doc2html
+share/R/etc/older-stuff/doc2latex
+share/R/etc/older-stuff/doc2ms
+share/R/etc/older-stuff/extract-Examples
+share/R/etc/older-stuff/help.format
+share/R/etc/older-stuff/help.index
+share/R/etc/older-stuff/help.pretty
+share/R/etc/older-stuff/help.pretty.perl
+share/R/etc/older-stuff/help.update
+share/R/etc/undoc/NoEx
+share/R/etc/undoc/Makefile
+share/R/etc/undoc/extrExamp
+share/R/etc/undoc/R-funs
+share/R/etc/undoc/extrAllExamp
+share/R/etc/undoc/getDoc
+share/R/etc/undoc/getFunctions
+share/R/etc/undoc/getnames
+share/R/etc/SHLIB
+share/R/etc/COMPILE
+share/R/etc/INSTALL
+share/R/etc/REMOVE
+share/R/etc/Rdconv
+share/R/etc/Rdindex
+share/R/etc/Rman2Rd
+share/R/etc/Sd2Rd
+share/R/etc/build-help
+share/R/etc/build-htmlpkglist
+share/R/etc/help.pretty
+share/R/etc/html2dos
+share/R/etc/stamp-help
+share/R/etc/stamp-html
+share/R/html/authors.html
+share/R/html/copying.html
+share/R/html/index.html
+share/R/html/intro.html
+share/R/html/notdone.html
+share/R/html/thanks.html
+share/R/html/tech/color.html
+share/R/html/tech/linetype.html
+share/R/html/test/spline.html
+share/R/include/S.h
+share/R/include/S_compat.h
+share/R/include/f2c.h
+share/R/include/Fortran.h
+share/R/include/Blas.h
+share/R/include/Linpack.h
+share/R/library/base/R/base
+share/R/library/base/R/Rprofile
+share/R/library/base/data/acid.R
+share/R/library/base/data/women.R
+share/R/library/base/data/warpbreaks.doc
+share/R/library/base/data/warpbreaks.R
+share/R/library/base/data/volcano.doc
+share/R/library/base/data/volcano.R
+share/R/library/base/data/uspop.doc
+share/R/library/base/data/uspop.R
+share/R/library/base/data/trees.doc
+share/R/library/base/data/trees.R
+share/R/library/base/data/swiss.R
+share/R/library/base/data/sunspots.R
+share/R/library/base/data/state.R
+share/R/library/base/data/stackloss.doc
+share/R/library/base/data/stackloss.R
+share/R/library/base/data/sleep.R
+share/R/library/base/data/savings.doc
+share/R/library/base/data/savings.R
+share/R/library/base/data/rivers.doc
+share/R/library/base/data/rivers.R
+share/R/library/base/data/randu.R
+share/R/library/base/data/quakes.doc
+share/R/library/base/data/quakes.R
+share/R/library/base/data/pressure.R
+share/R/library/base/data/presidents.doc
+share/R/library/base/data/presidents.R
+share/R/library/base/data/precip.doc
+share/R/library/base/data/precip.R
+share/R/library/base/data/plants.R
+share/R/library/base/data/pigs.doc
+share/R/library/base/data/pigs.R
+share/R/library/base/data/phones.doc
+share/R/library/base/data/phones.R
+share/R/library/base/data/nhtemp.doc
+share/R/library/base/data/nhtemp.R
+share/R/library/base/data/mtcars.R
+share/R/library/base/data/longley.doc
+share/R/library/base/data/longley.R
+share/R/library/base/data/judges.doc
+share/R/library/base/data/judges.R
+share/R/library/base/data/islands.doc
+share/R/library/base/data/islands.R
+share/R/library/base/data/iris3.R
+share/R/library/base/data/iris.R
+share/R/library/base/data/insects.doc
+share/R/library/base/data/insects.R
+share/R/library/base/data/infert.doc
+share/R/library/base/data/infert.R
+share/R/library/base/data/index.doc
+share/R/library/base/data/freeny.doc
+share/R/library/base/data/freeny.R
+share/R/library/base/data/faithful.doc
+share/R/library/base/data/faithful.R
+share/R/library/base/data/eurodist.doc
+share/R/library/base/data/eurodist.R
+share/R/library/base/data/esoph.doc
+share/R/library/base/data/esoph.R
+share/R/library/base/data/discoveries.doc
+share/R/library/base/data/discoveries.R
+share/R/library/base/data/deaths.doc
+share/R/library/base/data/deaths.R
+share/R/library/base/data/crimes.doc
+share/R/library/base/data/crimes.R
+share/R/library/base/data/consume.doc
+share/R/library/base/data/consume.R
+share/R/library/base/data/chickwts.doc
+share/R/library/base/data/chickwts.R
+share/R/library/base/data/cars.doc
+share/R/library/base/data/cars.R
+share/R/library/base/data/bees.doc
+share/R/library/base/data/bees.R
+share/R/library/base/data/attitude.R
+share/R/library/base/data/attenu.doc
+share/R/library/base/data/attenu.R
+share/R/library/base/data/anscombe.doc
+share/R/library/base/data/anscombe.R
+share/R/library/base/data/airquality.doc
+share/R/library/base/data/airquality.R
+share/R/library/base/data/airmiles.doc
+share/R/library/base/data/airmiles.R
+share/R/library/base/data/acid.doc
+share/R/library/base/data/women.doc
+share/R/library/base/TITLE
+share/R/library/base/INDEX
+share/R/library/base/help/Arithmetic
+share/R/library/base/help/AnIndex
+share/R/library/base/help/Beta
+share/R/library/base/help/Binomial
+share/R/library/base/help/Cauchy
+share/R/library/base/help/Chisquare
+share/R/library/base/help/Comparison
+share/R/library/base/help/Constants
+share/R/library/base/help/Control
+share/R/library/base/help/Devices
+share/R/library/base/help/Exponential
+share/R/library/base/help/Extract
+share/R/library/base/help/Extremes
+share/R/library/base/help/F
+share/R/library/base/help/Foreign
+share/R/library/base/help/GammaDist
+share/R/library/base/help/Geometric
+share/R/library/base/help/Hyperbolic
+share/R/library/base/help/Hypergeometric
+share/R/library/base/help/IQR
+share/R/library/base/help/Internal
+share/R/library/base/help/Log
+share/R/library/base/help/Logic
+share/R/library/base/help/Logistic
+share/R/library/base/help/Lognormal
+share/R/library/base/help/Machine
+share/R/library/base/help/Math
+share/R/library/base/help/NA
+share/R/library/base/help/NChisquare
+share/R/library/base/help/NULL
+share/R/library/base/help/NegBinomial
+share/R/library/base/help/Normal
+share/R/library/base/help/Poisson
+share/R/library/base/help/Random
+share/R/library/base/help/Round
+share/R/library/base/help/Special
+share/R/library/base/help/T
+share/R/library/base/help/Trig
+share/R/library/base/help/Uniform
+share/R/library/base/help/Version
+share/R/library/base/help/Weibull
+share/R/library/base/help/abbreviate
+share/R/library/base/help/abline
+share/R/library/base/help/all
+share/R/library/base/help/allnames
+share/R/library/base/help/anova
+share/R/library/base/help/aperm
+share/R/library/base/help/append
+share/R/library/base/help/apply
+share/R/library/base/help/approxfun
+share/R/library/base/help/apropos
+share/R/library/base/help/args
+share/R/library/base/help/array
+share/R/library/base/help/arrows
+share/R/library/base/help/assign
+share/R/library/base/help/attach
+share/R/library/base/help/attr
+share/R/library/base/help/attributes
+share/R/library/base/help/autoload
+share/R/library/base/help/axis
+share/R/library/base/help/backsolve
+share/R/library/base/help/barplot
+share/R/library/base/help/box
+share/R/library/base/help/boxplot
+share/R/library/base/help/boxplot.stats
+share/R/library/base/help/browser
+share/R/library/base/help/bxp
+share/R/library/base/help/c
+share/R/library/base/help/call
+share/R/library/base/help/cat
+share/R/library/base/help/cbind
+share/R/library/base/help/character
+share/R/library/base/help/chisq.test
+share/R/library/base/help/chol
+share/R/library/base/help/chol2inv
+share/R/library/base/help/class
+share/R/library/base/help/codes
+share/R/library/base/help/coefficients
+share/R/library/base/help/col
+share/R/library/base/help/colnames
+share/R/library/base/help/colors
+share/R/library/base/help/complete.cases
+share/R/library/base/help/complex
+share/R/library/base/help/contour
+share/R/library/base/help/contrast
+share/R/library/base/help/contrasts
+share/R/library/base/help/convolve
+share/R/library/base/help/coplot
+share/R/library/base/help/cor
+share/R/library/base/help/count.fields
+share/R/library/base/help/crossprod
+share/R/library/base/help/cumsum
+share/R/library/base/help/curve
+share/R/library/base/help/cut
+share/R/library/base/help/data
+share/R/library/base/help/data.class
+share/R/library/base/help/data.frame
+share/R/library/base/help/data.matrix
+share/R/library/base/help/dataentry
+share/R/library/base/help/debug
+share/R/library/base/help/delay
+share/R/library/base/help/demo
+share/R/library/base/help/density
+share/R/library/base/help/deparse
+share/R/library/base/help/deriv
+share/R/library/base/help/detach
+share/R/library/base/help/deviance
+share/R/library/base/help/df.residual
+share/R/library/base/help/diag
+share/R/library/base/help/diff
+share/R/library/base/help/dim
+share/R/library/base/help/dimnames
+share/R/library/base/help/do.call
+share/R/library/base/help/dotplot
+share/R/library/base/help/double
+share/R/library/base/help/dput
+share/R/library/base/help/drop
+share/R/library/base/help/dump
+share/R/library/base/help/duplicated
+share/R/library/base/help/dynload
+share/R/library/base/help/edit
+share/R/library/base/help/eigen
+share/R/library/base/help/environment
+share/R/library/base/help/eval
+share/R/library/base/help/exists
+share/R/library/base/help/expression
+share/R/library/base/help/factor
+share/R/library/base/help/family
+share/R/library/base/help/fft
+share/R/library/base/help/fitted.values
+share/R/library/base/help/fivenum
+share/R/library/base/help/fix
+share/R/library/base/help/formals
+share/R/library/base/help/format
+share/R/library/base/help/formatc
+share/R/library/base/help/formula
+share/R/library/base/help/frame
+share/R/library/base/help/function
+share/R/library/base/help/gc
+share/R/library/base/help/get
+share/R/library/base/help/getenv
+share/R/library/base/help/gl
+share/R/library/base/help/glm
+share/R/library/base/help/graphics.off
+share/R/library/base/help/gray
+share/R/library/base/help/grep
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