summaryrefslogtreecommitdiff
path: root/biology
diff options
context:
space:
mode:
authorNeil Blakey-Milner <nbm@FreeBSD.org>2000-07-31 19:13:54 +0000
committerNeil Blakey-Milner <nbm@FreeBSD.org>2000-07-31 19:13:54 +0000
commited9505e0ad5c73de8e28d69a6b8223a011a47a7b (patch)
tree7348540250d3724e5e4b6a6240f803a5040230d2 /biology
parentThis needs a repository copy. (diff)
Add emboss, the European Molecular Biology Open Software Suite
PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com>
Notes
Notes: svn path=/head/; revision=31178
Diffstat (limited to 'biology')
-rw-r--r--biology/Makefile1
-rw-r--r--biology/emboss/Makefile26
-rw-r--r--biology/emboss/distinfo1
-rw-r--r--biology/emboss/pkg-comment1
-rw-r--r--biology/emboss/pkg-descr15
-rw-r--r--biology/emboss/pkg-plist656
6 files changed, 700 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 6508ab53e363..d95edb241605 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -5,6 +5,7 @@
SUBDIR += chemeq
SUBDIR += clustalw
SUBDIR += deft
+ SUBDIR += emboss
SUBDIR += gperiodic
SUBDIR += hmmer
SUBDIR += kinemage
diff --git a/biology/emboss/Makefile b/biology/emboss/Makefile
new file mode 100644
index 000000000000..cc038a5ff719
--- /dev/null
+++ b/biology/emboss/Makefile
@@ -0,0 +1,26 @@
+# New ports collection makefile for: emboss
+# Date created: 31 July 2000
+# Whom: Johann Visagie <johann@egenetics.com>
+#
+# $FreeBSD$
+#
+
+PORTNAME= emboss
+PORTVERSION= 1.0.0
+CATEGORIES= biology
+MASTER_SITES= ftp://ftp.uk.embnet.org/pub/EMBOSS/
+DISTNAME= EMBOSS-${PORTVERSION}
+
+MAINTAINER= johann@egenetics.com
+
+LIB_DEPENDS= gd.1:${PORTSDIR}/graphics/gd \
+ png.4:${PORTSDIR}/graphics/png
+
+USE_GMAKE= yes
+GNU_CONFIGURE= yes
+USE_LIBTOOL= yes
+
+CONFIGURE_ENV= CPPFLAGS="-I${LOCALBASE}/include/gd" \
+ LIBS="-L${LOCALBASE}/lib"
+
+.include <bsd.port.mk>
diff --git a/biology/emboss/distinfo b/biology/emboss/distinfo
new file mode 100644
index 000000000000..274c24a97dfa
--- /dev/null
+++ b/biology/emboss/distinfo
@@ -0,0 +1 @@
+MD5 (EMBOSS-1.0.0.tar.gz) = 7b8e7bebdef3adfb6fe45a2d346318fb
diff --git a/biology/emboss/pkg-comment b/biology/emboss/pkg-comment
new file mode 100644
index 000000000000..5b05a785f6fc
--- /dev/null
+++ b/biology/emboss/pkg-comment
@@ -0,0 +1 @@
+A collection of open source tools for genetic sequence analysis
diff --git a/biology/emboss/pkg-descr b/biology/emboss/pkg-descr
new file mode 100644
index 000000000000..3b212c44b033
--- /dev/null
+++ b/biology/emboss/pkg-descr
@@ -0,0 +1,15 @@
+The European Molecular Biology Open Software Suite (EMBOSS) is a
+comprehensive set (about 100) of open source tools for genetic sequence
+analysis. EMBOSS is produced by the European Molecular Biology Network
+(EMBnet - http://www.embnet.org/).
+
+All EMBOSS tools are all built around the same set of core libraries - AJAX
+and NUCLEUS - and therefore share a unified user interface and a uniform
+sequence addressing methodology.
+
+The various components of EMBOSS are distributed under the GPL, except the
+core libraries which are under the LGPL.
+
+WWW: http://www.uk.embnet.org/Software/EMBOSS/
+
+-- Johann Visagie <johann@egenetics.com>
diff --git a/biology/emboss/pkg-plist b/biology/emboss/pkg-plist
new file mode 100644
index 000000000000..0f02fc997526
--- /dev/null
+++ b/biology/emboss/pkg-plist
@@ -0,0 +1,656 @@
+bin/acdc
+bin/antigenic
+bin/backtranseq
+bin/banana
+bin/chaos
+bin/checktrans
+bin/chips
+bin/cirdna
+bin/codcmp
+bin/complex
+bin/compseq
+bin/cpgplot
+bin/cpgreport
+bin/cusp
+bin/cutseq
+bin/dan
+bin/dbiblast
+bin/dbiflat
+bin/dbigcg
+bin/descseq
+bin/digest
+bin/dotmatcher
+bin/dottup
+bin/dreg
+bin/einverted
+bin/embossdata
+bin/emma
+bin/equicktandem
+bin/est2genome
+bin/etandem
+bin/extractseq
+bin/findkm
+bin/freak
+bin/fuzznuc
+bin/fuzzpro
+bin/fuzztran
+bin/garnier
+bin/geecee
+bin/getorf
+bin/helixturnhelix
+bin/iep
+bin/infoseq
+bin/isochore
+bin/lindna
+bin/maskfeat
+bin/maskseq
+bin/matcher
+bin/merger
+bin/msbar
+bin/needle
+bin/newcpgreport
+bin/newcpgseek
+bin/newseq
+bin/noreturn
+bin/nthseq
+bin/octanol
+bin/oddcomp
+bin/palindrome
+bin/pasteseq
+bin/patmatdb
+bin/patmatmotifs
+bin/pepcoil
+bin/pepinfo
+bin/pepnet
+bin/pepstats
+bin/pepwheel
+bin/pepwindow
+bin/pepwindowall
+bin/plotorf
+bin/polydot
+bin/preg
+bin/prettyplot
+bin/prettyseq
+bin/prima
+bin/printsextract
+bin/profit
+bin/prophecy
+bin/prophet
+bin/prosextract
+bin/pscan
+bin/rebaseextract
+bin/redata
+bin/remap
+bin/restrict
+bin/revseq
+bin/seealso
+bin/seqmatchall
+bin/seqret
+bin/seqretall
+bin/seqretset
+bin/seqretsplit
+bin/showdb
+bin/showfeat
+bin/showorf
+bin/showseq
+bin/shuffleseq
+bin/sigcleave
+bin/splitter
+bin/stretcher
+bin/stssearch
+bin/supermatcher
+bin/syco
+bin/textsearch
+bin/tfextract
+bin/tfscan
+bin/tmap
+bin/transeq
+bin/trimseq
+bin/water
+bin/wobble
+bin/wordcount
+bin/wordmatch
+bin/wossname
+lib/libplplot.so.4
+lib/libplplot.so
+lib/libplplot.a
+lib/libajax.so.1
+lib/libajax.so
+lib/libajax.a
+lib/libajaxg.so.1
+lib/libajaxg.so
+lib/libajaxg.a
+lib/libnucleus.so.1
+lib/libnucleus.so
+lib/libnucleus.a
+share/EMBOSS/plstnd5.fnt
+share/EMBOSS/plxtnd5.fnt
+share/EMBOSS/acd/ajbad.acd
+share/EMBOSS/acd/ajfeatest.acd
+share/EMBOSS/acd/ajtest.acd
+share/EMBOSS/acd/ajtest2.acd
+share/EMBOSS/acd/cluster.acd
+share/EMBOSS/acd/demofeatures.acd
+share/EMBOSS/acd/demolist.acd
+share/EMBOSS/acd/demosequence.acd
+share/EMBOSS/acd/demostring.acd
+share/EMBOSS/acd/demotable.acd
+share/EMBOSS/acd/entrails.acd
+share/EMBOSS/acd/histogramtest.acd
+share/EMBOSS/acd/patmattest.acd
+share/EMBOSS/acd/plplottest.acd
+share/EMBOSS/acd/proteinmotifsearch.acd
+share/EMBOSS/acd/seqinfo.acd
+share/EMBOSS/acd/seqretallfeat.acd
+share/EMBOSS/acd/seqretfeat.acd
+share/EMBOSS/acd/seqtofeat.acd
+share/EMBOSS/acd/simplesw.acd
+share/EMBOSS/acd/testplot.acd
+share/EMBOSS/acd/treetypedisplay.acd
+share/EMBOSS/acd/antigenic.acd
+share/EMBOSS/acd/backtranseq.acd
+share/EMBOSS/acd/banana.acd
+share/EMBOSS/acd/chaos.acd
+share/EMBOSS/acd/checktrans.acd
+share/EMBOSS/acd/chips.acd
+share/EMBOSS/acd/cirdna.acd
+share/EMBOSS/acd/codcmp.acd
+share/EMBOSS/acd/complex.acd
+share/EMBOSS/acd/compseq.acd
+share/EMBOSS/acd/cpgplot.acd
+share/EMBOSS/acd/cpgreport.acd
+share/EMBOSS/acd/cusp.acd
+share/EMBOSS/acd/cutseq.acd
+share/EMBOSS/acd/dan.acd
+share/EMBOSS/acd/dbiblast.acd
+share/EMBOSS/acd/dbiflat.acd
+share/EMBOSS/acd/dbigcg.acd
+share/EMBOSS/acd/descseq.acd
+share/EMBOSS/acd/digest.acd
+share/EMBOSS/acd/dotmatcher.acd
+share/EMBOSS/acd/dottup.acd
+share/EMBOSS/acd/dreg.acd
+share/EMBOSS/acd/einverted.acd
+share/EMBOSS/acd/embossdata.acd
+share/EMBOSS/acd/emma.acd
+share/EMBOSS/acd/equicktandem.acd
+share/EMBOSS/acd/est2genome.acd
+share/EMBOSS/acd/etandem.acd
+share/EMBOSS/acd/extractseq.acd
+share/EMBOSS/acd/findkm.acd
+share/EMBOSS/acd/freak.acd
+share/EMBOSS/acd/fuzznuc.acd
+share/EMBOSS/acd/fuzzpro.acd
+share/EMBOSS/acd/fuzztran.acd
+share/EMBOSS/acd/garnier.acd
+share/EMBOSS/acd/geecee.acd
+share/EMBOSS/acd/getorf.acd
+share/EMBOSS/acd/helixturnhelix.acd
+share/EMBOSS/acd/iep.acd
+share/EMBOSS/acd/infoseq.acd
+share/EMBOSS/acd/isochore.acd
+share/EMBOSS/acd/lindna.acd
+share/EMBOSS/acd/maskfeat.acd
+share/EMBOSS/acd/maskseq.acd
+share/EMBOSS/acd/matcher.acd
+share/EMBOSS/acd/merger.acd
+share/EMBOSS/acd/msbar.acd
+share/EMBOSS/acd/needle.acd
+share/EMBOSS/acd/newcpgreport.acd
+share/EMBOSS/acd/newcpgseek.acd
+share/EMBOSS/acd/newseq.acd
+share/EMBOSS/acd/noreturn.acd
+share/EMBOSS/acd/nthseq.acd
+share/EMBOSS/acd/octanol.acd
+share/EMBOSS/acd/oddcomp.acd
+share/EMBOSS/acd/palindrome.acd
+share/EMBOSS/acd/pasteseq.acd
+share/EMBOSS/acd/patmatdb.acd
+share/EMBOSS/acd/patmatmotifs.acd
+share/EMBOSS/acd/pepcoil.acd
+share/EMBOSS/acd/pepinfo.acd
+share/EMBOSS/acd/pepnet.acd
+share/EMBOSS/acd/pepstats.acd
+share/EMBOSS/acd/pepwheel.acd
+share/EMBOSS/acd/pepwindow.acd
+share/EMBOSS/acd/pepwindowall.acd
+share/EMBOSS/acd/plotorf.acd
+share/EMBOSS/acd/polydot.acd
+share/EMBOSS/acd/preg.acd
+share/EMBOSS/acd/prettyplot.acd
+share/EMBOSS/acd/prettyseq.acd
+share/EMBOSS/acd/prima.acd
+share/EMBOSS/acd/printsextract.acd
+share/EMBOSS/acd/profit.acd
+share/EMBOSS/acd/prophecy.acd
+share/EMBOSS/acd/prophet.acd
+share/EMBOSS/acd/prosextract.acd
+share/EMBOSS/acd/pscan.acd
+share/EMBOSS/acd/rebaseextract.acd
+share/EMBOSS/acd/redata.acd
+share/EMBOSS/acd/remap.acd
+share/EMBOSS/acd/restrict.acd
+share/EMBOSS/acd/revseq.acd
+share/EMBOSS/acd/seqmatchall.acd
+share/EMBOSS/acd/seqret.acd
+share/EMBOSS/acd/seqretall.acd
+share/EMBOSS/acd/seqretset.acd
+share/EMBOSS/acd/seqretsplit.acd
+share/EMBOSS/acd/showdb.acd
+share/EMBOSS/acd/seqrettype.acd
+share/EMBOSS/acd/showfeat.acd
+share/EMBOSS/acd/showorf.acd
+share/EMBOSS/acd/showseq.acd
+share/EMBOSS/acd/shuffleseq.acd
+share/EMBOSS/acd/sigcleave.acd
+share/EMBOSS/acd/splitter.acd
+share/EMBOSS/acd/stretcher.acd
+share/EMBOSS/acd/stssearch.acd
+share/EMBOSS/acd/supermatcher.acd
+share/EMBOSS/acd/syco.acd
+share/EMBOSS/acd/textsearch.acd
+share/EMBOSS/acd/tfextract.acd
+share/EMBOSS/acd/tfscan.acd
+share/EMBOSS/acd/tmap.acd
+share/EMBOSS/acd/transeq.acd
+share/EMBOSS/acd/trimseq.acd
+share/EMBOSS/acd/water.acd
+share/EMBOSS/acd/wobble.acd
+share/EMBOSS/acd/wordcount.acd
+share/EMBOSS/acd/wordmatch.acd
+share/EMBOSS/acd/wossname.acd
+share/EMBOSS/acd/codes.english
+share/EMBOSS/data/CODONS/Eacc.cut
+share/EMBOSS/data/CODONS/Eadenovirus5.cut
+share/EMBOSS/data/CODONS/Eadenovirus7.cut
+share/EMBOSS/data/CODONS/Eaidlav.cut
+share/EMBOSS/data/CODONS/Eanasp.cut
+share/EMBOSS/data/CODONS/Eani.cut
+share/EMBOSS/data/CODONS/Eani_h.cut
+share/EMBOSS/data/CODONS/Eanidmit.cut
+share/EMBOSS/data/CODONS/Easn.cut
+share/EMBOSS/data/CODONS/Eath.cut
+share/EMBOSS/data/CODONS/Eatu.cut
+share/EMBOSS/data/CODONS/Eavi.cut
+share/EMBOSS/data/CODONS/Ebja.cut
+share/EMBOSS/data/CODONS/Ebly.cut
+share/EMBOSS/data/CODONS/Ebme.cut
+share/EMBOSS/data/CODONS/Ebmo.cut
+share/EMBOSS/data/CODONS/Ebna.cut
+share/EMBOSS/data/CODONS/Ebov.cut
+share/EMBOSS/data/CODONS/Ebovsp.cut
+share/EMBOSS/data/CODONS/Ebst.cut
+share/EMBOSS/data/CODONS/Ebsu.cut
+share/EMBOSS/data/CODONS/Ebsu_h.cut
+share/EMBOSS/data/CODONS/Ecac.cut
+share/EMBOSS/data/CODONS/Ecal.cut
+share/EMBOSS/data/CODONS/Eccr.cut
+share/EMBOSS/data/CODONS/Ecel.cut
+share/EMBOSS/data/CODONS/Echi.cut
+share/EMBOSS/data/CODONS/Echicken.cut
+share/EMBOSS/data/CODONS/Echisp.cut
+share/EMBOSS/data/CODONS/Echk.cut
+share/EMBOSS/data/CODONS/Echmp.cut
+share/EMBOSS/data/CODONS/Echnt.cut
+share/EMBOSS/data/CODONS/Echos.cut
+share/EMBOSS/data/CODONS/Echzm.cut
+share/EMBOSS/data/CODONS/Echzmrubp.cut
+share/EMBOSS/data/CODONS/Ecpx.cut
+share/EMBOSS/data/CODONS/Ecre.cut
+share/EMBOSS/data/CODONS/Ecrisp.cut
+share/EMBOSS/data/CODONS/Ectr.cut
+share/EMBOSS/data/CODONS/Edayhoff.cut
+share/EMBOSS/data/CODONS/Eddi.cut
+share/EMBOSS/data/CODONS/Eddi_h.cut
+share/EMBOSS/data/CODONS/Edog.cut
+share/EMBOSS/data/CODONS/Edro.cut
+share/EMBOSS/data/CODONS/Edro_h.cut
+share/EMBOSS/data/CODONS/Edrosophila.cut
+share/EMBOSS/data/CODONS/Eeca.cut
+share/EMBOSS/data/CODONS/Ef1.cut
+share/EMBOSS/data/CODONS/Eeco.cut
+share/EMBOSS/data/CODONS/Eeco_h.cut
+share/EMBOSS/data/CODONS/Eecoli.cut
+share/EMBOSS/data/CODONS/Efish.cut
+share/EMBOSS/data/CODONS/Efmdvpolyp.cut
+share/EMBOSS/data/CODONS/Eham.cut
+share/EMBOSS/data/CODONS/Ehha.cut
+share/EMBOSS/data/CODONS/Ehin.cut
+share/EMBOSS/data/CODONS/Ehma.cut
+share/EMBOSS/data/CODONS/Ehum.cut
+share/EMBOSS/data/CODONS/Ehuman.cut
+share/EMBOSS/data/CODONS/Ekla.cut
+share/EMBOSS/data/CODONS/Ekpn.cut
+share/EMBOSS/data/CODONS/Ella.cut
+share/EMBOSS/data/CODONS/Emac.cut
+share/EMBOSS/data/CODONS/Emaize.cut
+share/EMBOSS/data/CODONS/Emam_h.cut
+share/EMBOSS/data/CODONS/Emixlg.cut
+share/EMBOSS/data/CODONS/Emouse.cut
+share/EMBOSS/data/CODONS/Emsa.cut
+share/EMBOSS/data/CODONS/Emse.cut
+share/EMBOSS/data/CODONS/Emta.cut
+share/EMBOSS/data/CODONS/Emtu.cut
+share/EMBOSS/data/CODONS/Emus.cut
+share/EMBOSS/data/CODONS/Emussp.cut
+share/EMBOSS/data/CODONS/Emva.cut
+share/EMBOSS/data/CODONS/Emze.cut
+share/EMBOSS/data/CODONS/Emzecp.cut
+share/EMBOSS/data/CODONS/Encr.cut
+share/EMBOSS/data/CODONS/Eneu.cut
+share/EMBOSS/data/CODONS/Engo.cut
+share/EMBOSS/data/CODONS/Eoncsp.cut
+share/EMBOSS/data/CODONS/Epae.cut
+share/EMBOSS/data/CODONS/Epea.cut
+share/EMBOSS/data/CODONS/Epet.cut
+share/EMBOSS/data/CODONS/Epfa.cut
+share/EMBOSS/data/CODONS/Ephix174.cut
+share/EMBOSS/data/CODONS/Ephv.cut
+share/EMBOSS/data/CODONS/Ephy.cut
+share/EMBOSS/data/CODONS/Epig.cut
+share/EMBOSS/data/CODONS/Epolyomaa2.cut
+share/EMBOSS/data/CODONS/Epombe.cut
+share/EMBOSS/data/CODONS/Epombecai.cut
+share/EMBOSS/data/CODONS/Epot.cut
+share/EMBOSS/data/CODONS/Eppu.cut
+share/EMBOSS/data/CODONS/Epse.cut
+share/EMBOSS/data/CODONS/Epsy.cut
+share/EMBOSS/data/CODONS/Epvu.cut
+share/EMBOSS/data/CODONS/Erab.cut
+share/EMBOSS/data/CODONS/Erabbit.cut
+share/EMBOSS/data/CODONS/Erabsp.cut
+share/EMBOSS/data/CODONS/Erat.cut
+share/EMBOSS/data/CODONS/Eratsp.cut
+share/EMBOSS/data/CODONS/Erca.cut
+share/EMBOSS/data/CODONS/Erhm.cut
+share/EMBOSS/data/CODONS/Eric.cut
+share/EMBOSS/data/CODONS/Erle.cut
+share/EMBOSS/data/CODONS/Erme.cut
+share/EMBOSS/data/CODONS/Ersp.cut
+share/EMBOSS/data/CODONS/Esalsp.cut
+share/EMBOSS/data/CODONS/Esau.cut
+share/EMBOSS/data/CODONS/Esco.cut
+share/EMBOSS/data/CODONS/Esgi.cut
+share/EMBOSS/data/CODONS/Eshp.cut
+share/EMBOSS/data/CODONS/Eshpsp.cut
+share/EMBOSS/data/CODONS/Esli.cut
+share/EMBOSS/data/CODONS/Eslm.cut
+share/EMBOSS/data/CODONS/Esma.cut
+share/EMBOSS/data/CODONS/Esmi.cut
+share/EMBOSS/data/CODONS/Esmu.cut
+share/EMBOSS/data/CODONS/Esoy.cut
+share/EMBOSS/data/CODONS/Espi.cut
+share/EMBOSS/data/CODONS/Espn.cut
+share/EMBOSS/data/CODONS/Espo.cut
+share/EMBOSS/data/CODONS/Espo_h.cut
+share/EMBOSS/data/CODONS/Espu.cut
+share/EMBOSS/data/CODONS/Esta.cut
+share/EMBOSS/data/CODONS/Esty.cut
+share/EMBOSS/data/CODONS/Esus.cut
+share/EMBOSS/data/CODONS/Esv40.cut
+share/EMBOSS/data/CODONS/Esyhsp.cut
+share/EMBOSS/data/CODONS/Esynsp.cut
+share/EMBOSS/data/CODONS/Etbr.cut
+share/EMBOSS/data/CODONS/Etcr.cut
+share/EMBOSS/data/CODONS/Eter.cut
+share/EMBOSS/data/CODONS/Etetsp.cut
+share/EMBOSS/data/CODONS/Etob.cut
+share/EMBOSS/data/CODONS/Etobcp.cut
+share/EMBOSS/data/CODONS/Etom.cut
+share/EMBOSS/data/CODONS/Etrb.cut
+share/EMBOSS/data/CODONS/Evco.cut
+share/EMBOSS/data/CODONS/Ewht.cut
+share/EMBOSS/data/CODONS/Exel.cut
+share/EMBOSS/data/CODONS/Exenopus.cut
+share/EMBOSS/data/CODONS/Eyeast.cut
+share/EMBOSS/data/CODONS/Eyeastcai.cut
+share/EMBOSS/data/CODONS/Eyen.cut
+share/EMBOSS/data/CODONS/Eysc.cut
+share/EMBOSS/data/CODONS/Eysc_h.cut
+share/EMBOSS/data/CODONS/Eyscmt.cut
+share/EMBOSS/data/CODONS/Eysp.cut
+share/EMBOSS/data/CODONS/Ezebrafish.cut
+share/EMBOSS/data/CODONS/Ezma.cut
+share/EMBOSS/data/CODONS/Makefile
+share/EMBOSS/data/CODONS/Makefile.am
+share/EMBOSS/data/CODONS/Makefile.in
+share/EMBOSS/data/REBASE/dummyfile
+share/EMBOSS/data/PRINTS/dummyfile
+share/EMBOSS/data/PROSITE/dummyfile
+share/EMBOSS/data/EBLOSUM30
+share/EMBOSS/data/EBLOSUM35
+share/EMBOSS/data/EBLOSUM40
+share/EMBOSS/data/EBLOSUM45
+share/EMBOSS/data/EBLOSUM50
+share/EMBOSS/data/EBLOSUM55
+share/EMBOSS/data/EBLOSUM60
+share/EMBOSS/data/EBLOSUM62
+share/EMBOSS/data/EBLOSUM62-12
+share/EMBOSS/data/EBLOSUM65
+share/EMBOSS/data/EBLOSUM70
+share/EMBOSS/data/EBLOSUM75
+share/EMBOSS/data/EBLOSUM80
+share/EMBOSS/data/EBLOSUM85
+share/EMBOSS/data/EBLOSUM90
+share/EMBOSS/data/EBLOSUMN
+share/EMBOSS/data/EDNAFULL
+share/EMBOSS/data/EDNAMAT
+share/EMBOSS/data/EGC.0
+share/EMBOSS/data/EGC.1
+share/EMBOSS/data/EGC.10
+share/EMBOSS/data/EGC.11
+share/EMBOSS/data/EGC.12
+share/EMBOSS/data/EGC.13
+share/EMBOSS/data/EGC.14
+share/EMBOSS/data/EGC.15
+share/EMBOSS/data/EGC.2
+share/EMBOSS/data/EGC.3
+share/EMBOSS/data/EGC.4
+share/EMBOSS/data/EGC.5
+share/EMBOSS/data/EGC.6
+share/EMBOSS/data/EGC.9
+share/EMBOSS/data/ENUC.4.2
+share/EMBOSS/data/ENUC.4.4
+share/EMBOSS/data/EPAM10
+share/EMBOSS/data/EPAM100
+share/EMBOSS/data/EPAM110
+share/EMBOSS/data/EPAM120
+share/EMBOSS/data/EPAM130
+share/EMBOSS/data/EPAM140
+share/EMBOSS/data/EPAM150
+share/EMBOSS/data/EPAM160
+share/EMBOSS/data/EPAM170
+share/EMBOSS/data/EPAM180
+share/EMBOSS/data/EPAM190
+share/EMBOSS/data/EPAM20
+share/EMBOSS/data/EPAM200
+share/EMBOSS/data/EPAM210
+share/EMBOSS/data/EPAM220
+share/EMBOSS/data/EPAM230
+share/EMBOSS/data/EPAM240
+share/EMBOSS/data/EPAM250
+share/EMBOSS/data/EPAM260
+share/EMBOSS/data/EPAM270
+share/EMBOSS/data/EPAM280
+share/EMBOSS/data/EPAM290
+share/EMBOSS/data/EPAM30
+share/EMBOSS/data/EPAM300
+share/EMBOSS/data/EPAM310
+share/EMBOSS/data/EPAM320
+share/EMBOSS/data/EPAM330
+share/EMBOSS/data/EPAM340
+share/EMBOSS/data/EPAM350
+share/EMBOSS/data/EPAM360
+share/EMBOSS/data/EPAM370
+share/EMBOSS/data/EPAM380
+share/EMBOSS/data/EPAM390
+share/EMBOSS/data/EPAM40
+share/EMBOSS/data/EPAM400
+share/EMBOSS/data/EPAM410
+share/EMBOSS/data/EPAM420
+share/EMBOSS/data/EPAM430
+share/EMBOSS/data/EPAM440
+share/EMBOSS/data/EPAM450
+share/EMBOSS/data/EPAM460
+share/EMBOSS/data/EPAM470
+share/EMBOSS/data/EPAM480
+share/EMBOSS/data/EPAM490
+share/EMBOSS/data/EPAM50
+share/EMBOSS/data/EPAM500
+share/EMBOSS/data/EPAM60
+share/EMBOSS/data/EPAM70
+share/EMBOSS/data/EPAM80
+share/EMBOSS/data/EPAM90
+share/EMBOSS/data/Epk.dat
+share/EMBOSS/data/Eaa_acc_surface.dat
+share/EMBOSS/data/Eaa_hydropathy.dat
+share/EMBOSS/data/Eaa_properties.dat
+share/EMBOSS/data/Eamino.dat
+share/EMBOSS/data/Eangles_tri.dat
+share/EMBOSS/data/Eantigenic.dat
+share/EMBOSS/data/Ebases.iub
+share/EMBOSS/data/Edayhoff.freq
+share/EMBOSS/data/Edna.melt
+share/EMBOSS/data/Efeatures.embl
+share/EMBOSS/data/Efeatures.gff
+share/EMBOSS/data/Ehth.dat
+share/EMBOSS/data/Ehth87.dat
+share/EMBOSS/data/Enakai.dat
+share/EMBOSS/data/Epepcoil.dat
+share/EMBOSS/data/Epprofile
+share/EMBOSS/data/Erna.melt
+share/EMBOSS/data/Esig.euk
+share/EMBOSS/data/Esig.pro
+share/EMBOSS/data/Etags.embl
+share/EMBOSS/data/Etags.gff
+share/EMBOSS/data/Ewhite-wimley.dat
+share/EMBOSS/data/Makefile
+share/EMBOSS/data/Makefile.am
+share/EMBOSS/data/Makefile.in
+share/EMBOSS/data/embossre.equ
+share/EMBOSS/test/data/Makefile
+share/EMBOSS/test/data/Makefile.am
+share/EMBOSS/test/data/Makefile.in
+share/EMBOSS/test/data/dna.acedb
+share/EMBOSS/test/data/dna.aln
+share/EMBOSS/test/data/dna.asn1
+share/EMBOSS/test/data/dna.codata
+share/EMBOSS/test/data/dna.embl
+share/EMBOSS/test/data/dna.fasta
+share/EMBOSS/test/data/dna.fitch
+share/EMBOSS/test/data/dna.gcg
+share/EMBOSS/test/data/dna.gcg8
+share/EMBOSS/test/data/dna.genbank
+share/EMBOSS/test/data/dna.ig
+share/EMBOSS/test/data/dna.m-acedb
+share/EMBOSS/test/data/dna.m-codata
+share/EMBOSS/test/data/dna.m-embl
+share/EMBOSS/test/data/dna.m-fasta
+share/EMBOSS/test/data/dna.m-fasta-long
+share/EMBOSS/test/data/dna.m-ncbi
+share/EMBOSS/test/data/dna.m-strider
+share/EMBOSS/test/data/dna.msf
+share/EMBOSS/test/data/dna.msf8
+share/EMBOSS/test/data/dna.ncbi
+share/EMBOSS/test/data/dna.phylip
+share/EMBOSS/test/data/dna.phylip3
+share/EMBOSS/test/data/dna.staden
+share/EMBOSS/test/data/dna.strider
+share/EMBOSS/test/data/dna.text
+share/EMBOSS/test/data/prot.acedb
+share/EMBOSS/test/data/prot.codata
+share/EMBOSS/test/data/prot.fasta
+share/EMBOSS/test/data/prot.gcg
+share/EMBOSS/test/data/prot.gcg8
+share/EMBOSS/test/data/prot.ig
+share/EMBOSS/test/data/prot.m-acedb
+share/EMBOSS/test/data/prot.m-codata
+share/EMBOSS/test/data/prot.m-fasta
+share/EMBOSS/test/data/prot.m-nbrf
+share/EMBOSS/test/data/prot.m-ncbi
+share/EMBOSS/test/data/prot.m-swiss
+share/EMBOSS/test/data/prot.nbrf
+share/EMBOSS/test/data/prot.ncbi
+share/EMBOSS/test/data/prot.swiss
+share/EMBOSS/test/data/prot.text
+share/EMBOSS/test/embl/Makefile
+share/EMBOSS/test/embl/Makefile.am
+share/EMBOSS/test/embl/Makefile.in
+share/EMBOSS/test/embl/acnum.hit
+share/EMBOSS/test/embl/acnum.trg
+share/EMBOSS/test/embl/division.lkp
+share/EMBOSS/test/embl/entrynam.idx
+share/EMBOSS/test/embl/est.dat
+share/EMBOSS/test/embl/hum1.dat
+share/EMBOSS/test/embl/inv.dat
+share/EMBOSS/test/embl/pro.dat
+share/EMBOSS/test/embl/rod.dat
+share/EMBOSS/test/embl/vrl.dat
+share/EMBOSS/test/embl/vrt.dat
+share/EMBOSS/test/pir/Makefile
+share/EMBOSS/test/pir/Makefile.am
+share/EMBOSS/test/pir/Makefile.in
+share/EMBOSS/test/pir/pir1.header
+share/EMBOSS/test/pir/pir1.names
+share/EMBOSS/test/pir/pir1.numbers
+share/EMBOSS/test/pir/pir1.offset
+share/EMBOSS/test/pir/pir1.ref
+share/EMBOSS/test/pir/pir1.seq
+share/EMBOSS/test/pir/pir2.header
+share/EMBOSS/test/pir/pir2.names
+share/EMBOSS/test/pir/pir2.numbers
+share/EMBOSS/test/pir/pir2.offset
+share/EMBOSS/test/pir/pir2.ref
+share/EMBOSS/test/pir/pir2.seq
+share/EMBOSS/test/pir/pir3.header
+share/EMBOSS/test/pir/pir3.names
+share/EMBOSS/test/pir/pir3.numbers
+share/EMBOSS/test/pir/pir3.offset
+share/EMBOSS/test/pir/pir3.ref
+share/EMBOSS/test/pir/pir3.seq
+share/EMBOSS/test/pir/pir4.header
+share/EMBOSS/test/pir/pir4.names
+share/EMBOSS/test/pir/pir4.numbers
+share/EMBOSS/test/pir/pir4.offset
+share/EMBOSS/test/pir/pir4.ref
+share/EMBOSS/test/pir/pir4.seq
+share/EMBOSS/test/swiss/Makefile
+share/EMBOSS/test/swiss/Makefile.am
+share/EMBOSS/test/swiss/Makefile.in
+share/EMBOSS/test/swiss/acnum.hit
+share/EMBOSS/test/swiss/acnum.trg
+share/EMBOSS/test/swiss/division.lkp
+share/EMBOSS/test/swiss/entrynam.idx
+share/EMBOSS/test/swiss/seq.dat
+share/EMBOSS/test/swnew/Makefile
+share/EMBOSS/test/swnew/Makefile.am
+share/EMBOSS/test/swnew/Makefile.in
+share/EMBOSS/test/swnew/acnum.hit
+share/EMBOSS/test/swnew/acnum.trg
+share/EMBOSS/test/swnew/division.lkp
+share/EMBOSS/test/swnew/entrynam.idx
+share/EMBOSS/test/swnew/new_seq.dat
+share/EMBOSS/test/swnew/upd_ann.dat
+share/EMBOSS/test/swnew/upd_seq.dat
+share/EMBOSS/test/wormpep/Makefile
+share/EMBOSS/test/wormpep/Makefile.am
+share/EMBOSS/test/wormpep/Makefile.in
+share/EMBOSS/test/wormpep/acnum.hit
+share/EMBOSS/test/wormpep/acnum.trg
+share/EMBOSS/test/wormpep/division.lkp
+share/EMBOSS/test/wormpep/entrynam.idx
+share/EMBOSS/test/wormpep/wormpep
+@dirrm share/EMBOSS/data/CODONS
+@dirrm share/EMBOSS/data/REBASE
+@dirrm share/EMBOSS/data/PRINTS
+@dirrm share/EMBOSS/data/PROSITE
+@dirrm share/EMBOSS/data
+@dirrm share/EMBOSS/acd
+@dirrm share/EMBOSS/test/data
+@dirrm share/EMBOSS/test/embl
+@dirrm share/EMBOSS/test/pir
+@dirrm share/EMBOSS/test/swiss
+@dirrm share/EMBOSS/test/swnew
+@dirrm share/EMBOSS/test/wormpep
+@dirrm share/EMBOSS/test
+@dirrm share/EMBOSS