diff options
author | Neil Blakey-Milner <nbm@FreeBSD.org> | 2000-09-11 14:56:36 +0000 |
---|---|---|
committer | Neil Blakey-Milner <nbm@FreeBSD.org> | 2000-09-11 14:56:36 +0000 |
commit | dc73aa3d9b7444e4f4d5241f9f462d97e566a4fd (patch) | |
tree | 74199f39884eb834e9bb125b154209b566afa2e3 /biology | |
parent | Use gtk-- 1.2.3 (diff) |
Update to 0.90.d03
PR: 21202
Submitted by: Johann Visagie <johann@egenetics.com>
Notes
Notes:
svn path=/head/; revision=32519
Diffstat (limited to 'biology')
-rw-r--r-- | biology/py-biopython/Makefile | 15 | ||||
-rw-r--r-- | biology/py-biopython/distinfo | 2 | ||||
-rw-r--r-- | biology/py-biopython/pkg-plist | 267 |
3 files changed, 152 insertions, 132 deletions
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index 9f7e08642cba..3010865e5c8e 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -6,22 +6,23 @@ # PORTNAME= biopython -PORTVERSION= 0.90.d02 +PORTVERSION= 0.90.d03 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/Download/ PKGNAMEPREFIX= py- -DISTNAME= biopython-0.90-d02 +DISTNAME= biopython-0.90-d03 MAINTAINER= johann@egenetics.com -BUILD_DEPENDS= python1.5:${PORTSDIR}/lang/python15 \ - ${LOCALBASE}/lib/python1.5/site-packages/Numeric/Numeric.py:${PORTSDIR}/math/numpy \ - ${LOCALBASE}/lib/python1.5/site-packages/distutils/core.py:${PORTSDIR}/misc/py-distutils +USE_PYTHON= yes + +BUILD_DEPENDS= ${PYDISTUTILS} \ + ${PYTHON_SITELIBDIR}/Numeric/Numeric.py:${PORTSDIR}/math/numpy do-build: - @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py build) + @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py build) do-install: - @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py install) + @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup.py install) .include <bsd.port.mk> diff --git a/biology/py-biopython/distinfo b/biology/py-biopython/distinfo index 78415c8ccaaa..3f2f59443b92 100644 --- a/biology/py-biopython/distinfo +++ b/biology/py-biopython/distinfo @@ -1 +1 @@ -MD5 (biopython-0.90-d02.tar.gz) = 56a53fa96765318cb053fc266e337ba9 +MD5 (biopython-0.90-d03.tar.gz) = 6eba4ef18fee09f47c127d44667a3d5c diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist index ecf8f2ae927d..3aa022327daa 100644 --- a/biology/py-biopython/pkg-plist +++ b/biology/py-biopython/pkg-plist @@ -1,124 +1,143 @@ -lib/python1.5/site-packages/Bio/__init__.py -lib/python1.5/site-packages/Bio/ParserSupport.py -lib/python1.5/site-packages/Bio/Seq.py -lib/python1.5/site-packages/Bio/Index.py -lib/python1.5/site-packages/Bio/PropertyManager.py -lib/python1.5/site-packages/Bio/File.py -lib/python1.5/site-packages/Bio/Sequence.py -lib/python1.5/site-packages/Bio/utils.py -lib/python1.5/site-packages/Bio/SeqRecord.py -lib/python1.5/site-packages/Bio/SwissProt/__init__.py -lib/python1.5/site-packages/Bio/SwissProt/KeyWList.py -lib/python1.5/site-packages/Bio/SwissProt/SProt.py -lib/python1.5/site-packages/Bio/Blast/__init__.py -lib/python1.5/site-packages/Bio/Blast/NCBIWWW.py -lib/python1.5/site-packages/Bio/Blast/Record.py -lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.py -lib/python1.5/site-packages/Bio/Enzyme/__init__.py -lib/python1.5/site-packages/Bio/Enzyme/Enzyme.py -lib/python1.5/site-packages/Bio/Fasta/__init__.py -lib/python1.5/site-packages/Bio/Fasta/Fasta.py -lib/python1.5/site-packages/Bio/PDB/__init__.py -lib/python1.5/site-packages/Bio/Prosite/__init__.py -lib/python1.5/site-packages/Bio/Prosite/Prosite.py -lib/python1.5/site-packages/Bio/Prosite/Pattern.py -lib/python1.5/site-packages/Bio/Prosite/Prodoc.py -lib/python1.5/site-packages/Bio/Medline/Medline.py -lib/python1.5/site-packages/Bio/Medline/PubMed.py -lib/python1.5/site-packages/Bio/Medline/__init__.py -lib/python1.5/site-packages/Bio/Data/IUPACData.py -lib/python1.5/site-packages/Bio/Data/__init__.py -lib/python1.5/site-packages/Bio/Data/CodonTable.py -lib/python1.5/site-packages/Bio/Entrez/__init__.py -lib/python1.5/site-packages/Bio/Tools/mathfns.py -lib/python1.5/site-packages/Bio/Tools/__init__.py -lib/python1.5/site-packages/Bio/Tools/Transcribe.py -lib/python1.5/site-packages/Bio/Tools/listfns.py -lib/python1.5/site-packages/Bio/Tools/stringfns.py -lib/python1.5/site-packages/Bio/Tools/Translate.py -lib/python1.5/site-packages/Bio/Tools/Classification/__init__.py -lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.py -lib/python1.5/site-packages/Bio/Tools/Classification/SVM.py -lib/python1.5/site-packages/Bio/Tools/Classification/kNN.py -lib/python1.5/site-packages/Bio/WWW/__init__.py -lib/python1.5/site-packages/Bio/WWW/NCBI.py -lib/python1.5/site-packages/Bio/WWW/ExPASy.py -lib/python1.5/site-packages/Bio/WWW/SCOP.py -lib/python1.5/site-packages/Bio/Alphabet/__init__.py -lib/python1.5/site-packages/Bio/Alphabet/IUPAC.py -lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.py -lib/python1.5/site-packages/Bio/Encodings/__init__.py -lib/python1.5/site-packages/Bio/SeqIO/__init__.py -lib/python1.5/site-packages/Bio/SeqIO/FASTA.py -lib/python1.5/site-packages/Bio/PDB/__init__.pyc -lib/python1.5/site-packages/Bio/WWW/__init__.pyc -lib/python1.5/site-packages/Bio/WWW/NCBI.pyc -lib/python1.5/site-packages/Bio/WWW/ExPASy.pyc -lib/python1.5/site-packages/Bio/WWW/SCOP.pyc -lib/python1.5/site-packages/Bio/Data/IUPACData.pyc -lib/python1.5/site-packages/Bio/Data/__init__.pyc -lib/python1.5/site-packages/Bio/Data/CodonTable.pyc -lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.pyc -lib/python1.5/site-packages/Bio/Encodings/__init__.pyc -lib/python1.5/site-packages/Bio/__init__.pyc -lib/python1.5/site-packages/Bio/Blast/__init__.pyc -lib/python1.5/site-packages/Bio/Blast/NCBIWWW.pyc -lib/python1.5/site-packages/Bio/Blast/Record.pyc -lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.pyc -lib/python1.5/site-packages/Bio/SeqIO/__init__.pyc -lib/python1.5/site-packages/Bio/SeqIO/FASTA.pyc -lib/python1.5/site-packages/Bio/ParserSupport.pyc -lib/python1.5/site-packages/Bio/Medline/Medline.pyc -lib/python1.5/site-packages/Bio/Medline/PubMed.pyc -lib/python1.5/site-packages/Bio/Medline/__init__.pyc -lib/python1.5/site-packages/Bio/Tools/mathfns.pyc -lib/python1.5/site-packages/Bio/Tools/__init__.pyc -lib/python1.5/site-packages/Bio/Tools/Transcribe.pyc -lib/python1.5/site-packages/Bio/Tools/listfns.pyc -lib/python1.5/site-packages/Bio/Tools/stringfns.pyc -lib/python1.5/site-packages/Bio/Tools/Translate.pyc -lib/python1.5/site-packages/Bio/Tools/Classification/__init__.pyc -lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.pyc -lib/python1.5/site-packages/Bio/Tools/Classification/SVM.pyc -lib/python1.5/site-packages/Bio/Tools/Classification/kNN.pyc -lib/python1.5/site-packages/Bio/Seq.pyc -lib/python1.5/site-packages/Bio/Index.pyc -lib/python1.5/site-packages/Bio/SwissProt/__init__.pyc -lib/python1.5/site-packages/Bio/SwissProt/KeyWList.pyc -lib/python1.5/site-packages/Bio/SwissProt/SProt.pyc -lib/python1.5/site-packages/Bio/Fasta/__init__.pyc -lib/python1.5/site-packages/Bio/Fasta/Fasta.pyc -lib/python1.5/site-packages/Bio/Alphabet/__init__.pyc -lib/python1.5/site-packages/Bio/Alphabet/IUPAC.pyc -lib/python1.5/site-packages/Bio/PropertyManager.pyc -lib/python1.5/site-packages/Bio/File.pyc -lib/python1.5/site-packages/Bio/Sequence.pyc -lib/python1.5/site-packages/Bio/utils.pyc -lib/python1.5/site-packages/Bio/Entrez/__init__.pyc -lib/python1.5/site-packages/Bio/Enzyme/__init__.pyc -lib/python1.5/site-packages/Bio/Enzyme/Enzyme.pyc -lib/python1.5/site-packages/Bio/SeqRecord.pyc -lib/python1.5/site-packages/Bio/Prosite/__init__.pyc -lib/python1.5/site-packages/Bio/Prosite/Prosite.pyc -lib/python1.5/site-packages/Bio/Prosite/Pattern.pyc -lib/python1.5/site-packages/Bio/Prosite/Prodoc.pyc -lib/python1.5/site-packages/Bio/Tools/Classification/cSVM.so -lib/python1.5/site-packages/Bio/Tools/clistfns.so -lib/python1.5/site-packages/Bio/Tools/cmathfns.so -lib/python1.5/site-packages/Bio/Tools/cstringfns.so -@dirrm lib/python1.5/site-packages/Bio/WWW -@dirrm lib/python1.5/site-packages/Bio/Tools/Classification -@dirrm lib/python1.5/site-packages/Bio/Tools -@dirrm lib/python1.5/site-packages/Bio/SwissProt -@dirrm lib/python1.5/site-packages/Bio/SeqIO -@dirrm lib/python1.5/site-packages/Bio/Prosite -@dirrm lib/python1.5/site-packages/Bio/PDB -@dirrm lib/python1.5/site-packages/Bio/Medline -@dirrm lib/python1.5/site-packages/Bio/Fasta -@dirrm lib/python1.5/site-packages/Bio/Enzyme -@dirrm lib/python1.5/site-packages/Bio/Entrez -@dirrm lib/python1.5/site-packages/Bio/Encodings -@dirrm lib/python1.5/site-packages/Bio/Data -@dirrm lib/python1.5/site-packages/Bio/Blast -@dirrm lib/python1.5/site-packages/Bio/Alphabet -@dirrm lib/python1.5/site-packages/Bio +lib/%%PYTHON_VERSION%%/site-packages/Bio/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/ParserSupport.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Seq.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/PropertyManager.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/File.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Sequence.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/KeyWList.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/SProt.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIWWW.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Record.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme/Enzyme.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/Fasta.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Prosite.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Pattern.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite/Prodoc.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/Medline.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/IUPACData.py 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lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio |