diff options
author | Johann Visagie <wjv@FreeBSD.org> | 2001-08-20 12:41:11 +0000 |
---|---|---|
committer | Johann Visagie <wjv@FreeBSD.org> | 2001-08-20 12:41:11 +0000 |
commit | db0bae3c16a4120f159fc71a88689516d8f47435 (patch) | |
tree | ca3316acc2d59122398820ed589a05b7f0abe81d /biology | |
parent | Fix MASTER_SITE_SUBDIR. It needs the same replacement as DISTNAME: .rc1 -> -rc1. (diff) |
- Move the (very) long list of manpages from the port Makefile to a separate
file.
Inspired by: nectar's treatment of security/heimdal
Notes
Notes:
svn path=/head/; revision=46533
Diffstat (limited to 'biology')
-rw-r--r-- | biology/p5-bioperl-devel/Makefile | 128 | ||||
-rw-r--r-- | biology/p5-bioperl-devel/files/Makefile.man | 235 |
2 files changed, 240 insertions, 123 deletions
diff --git a/biology/p5-bioperl-devel/Makefile b/biology/p5-bioperl-devel/Makefile index 2a1fd99762de..555482386ca9 100644 --- a/biology/p5-bioperl-devel/Makefile +++ b/biology/p5-bioperl-devel/Makefile @@ -69,128 +69,10 @@ PLIST_${ext}= "@comment " PLIST_SUB+= PLIST_${ext}=${PLIST_${ext}} .endfor -MAN3= Bio::AlignIO.3 Bio::AlignIO::bl2seq.3 \ - Bio::AlignIO::clustalw.3 Bio::AlignIO::fasta.3 \ - Bio::AlignIO::mase.3 Bio::AlignIO::meme.3 Bio::AlignIO::msf.3 \ - Bio::AlignIO::nexus.3 Bio::AlignIO::pfam.3 \ - Bio::AlignIO::phylip.3 Bio::AlignIO::prodom.3 \ - Bio::AlignIO::selex.3 Bio::AlignIO::stockholm.3 \ - Bio::Annotation.3 Bio::Annotation::Comment.3 \ - Bio::Annotation::DBLink.3 Bio::Annotation::Reference.3 \ - Bio::DB::Ace.3 Bio::DB::EMBL.3 Bio::DB::Fasta.3 \ - Bio::DB::GDB.3 Bio::DB::GFF.3 Bio::DB::GFF::Adaptor::dbi.3 \ - Bio::DB::GFF::Aggregator.3 \ - Bio::DB::GFF::Aggregator::alignment.3 \ - Bio::DB::GFF::Aggregator::clone.3 \ - Bio::DB::GFF::Aggregator::none.3 \ - Bio::DB::GFF::Aggregator::transcript.3 \ - Bio::DB::GFF::Featname.3 Bio::DB::GFF::Feature.3 \ - Bio::DB::GFF::Homol.3 Bio::DB::GFF::RelSegment.3 \ - Bio::DB::GFF::Segment.3 Bio::DB::GFF::Typename.3 \ - Bio::DB::GenBank.3 Bio::DB::GenPept.3 Bio::DB::NCBIHelper.3 \ - Bio::DB::RandomAccessI.3 Bio::DB::SeqI.3 Bio::DB::SwissProt.3 \ - Bio::DB::Universal.3 Bio::DB::UpdateableSeqI.3 \ - Bio::DB::WebDBSeqI.3 Bio::DBLinkContainerI.3 \ - Bio::Factory::ApplicationFactoryI.3 \ - Bio::Factory::DriverFactory.3 Bio::Factory::EMBOSS.3 \ - Bio::Factory::SeqAnalysisParserFactory.3 \ - Bio::Factory::SeqAnalysisParserFactoryI.3 \ - Bio::Index::Abstract.3 Bio::Index::AbstractSeq.3 \ - Bio::Index::EMBL.3 Bio::Index::Fasta.3 Bio::Index::GenBank.3 \ - Bio::Index::SwissPfam.3 Bio::Index::Swissprot.3 \ - Bio::LiveSeq::AARange.3 Bio::LiveSeq::Chain.3 \ - Bio::LiveSeq::ChainI.3 Bio::LiveSeq::DNA.3 \ - Bio::LiveSeq::Exon.3 Bio::LiveSeq::Gene.3 \ - Bio::LiveSeq::IO::BioPerl.3 Bio::LiveSeq::IO::Loader.3 \ - Bio::LiveSeq::IO::SRS.3 Bio::LiveSeq::Intron.3 \ - Bio::LiveSeq::Mutation.3 Bio::LiveSeq::Mutator.3 \ - Bio::LiveSeq::Prim_Transcript.3 Bio::LiveSeq::Range.3 \ - Bio::LiveSeq::Repeat_Region.3 Bio::LiveSeq::Repeat_Unit.3 \ - Bio::LiveSeq::SeqI.3 Bio::LiveSeq::Transcript.3 \ - Bio::LiveSeq::Translation.3 Bio::LocatableSeq.3 \ - Bio::Location::AvWithinCoordPolicy.3 \ - Bio::Location::CoordinatePolicyI.3 Bio::Location::Fuzzy.3 \ - Bio::Location::FuzzyLocationI.3 \ - Bio::Location::NarrowestCoordPolicy.3 Bio::Location::Simple.3 \ - Bio::Location::Split.3 Bio::Location::SplitLocationI.3 \ - Bio::Location::WidestCoordPolicy.3 Bio::LocationI.3 \ - Bio::PrimarySeq.3 Bio::PrimarySeqI.3 Bio::Range.3 \ - Bio::RangeI.3 Bio::Root::Err.3 Bio::Root::Global.3 \ - Bio::Root::IO.3 Bio::Root::IOManager.3 Bio::Root::Object.3 \ - Bio::Root::RootI.3 Bio::Root::Utilities.3 Bio::Root::Vector.3 \ - Bio::Root::Xref.3 Bio::SearchDist.3 Bio::Seq.3 \ - Bio::Seq::LargePrimarySeq.3 Bio::Seq::LargeSeq.3 \ - Bio::Seq::RichSeq.3 Bio::Seq::RichSeqI.3 \ - Bio::SeqAnalysisParserI.3 Bio::SeqFeature::Computation.3 \ - Bio::SeqFeature::Exon.3 Bio::SeqFeature::FeaturePair.3 \ - Bio::SeqFeature::Gene::Exon.3 Bio::SeqFeature::Gene::ExonI.3 \ - Bio::SeqFeature::Gene::GeneStructure.3 \ - Bio::SeqFeature::Gene::GeneStructureI.3 \ - Bio::SeqFeature::Gene::Transcript.3 \ - Bio::SeqFeature::Gene::TranscriptI.3 \ - Bio::SeqFeature::Generic.3 Bio::SeqFeature::Intron.3 \ - Bio::SeqFeature::PolyA.3 Bio::SeqFeature::Promoter.3 \ - Bio::SeqFeature::Similarity.3 \ - Bio::SeqFeature::SimilarityPair.3 Bio::SeqFeature::UTR3.3 \ - Bio::SeqFeature::UTR5.3 Bio::SeqFeatureI.3 Bio::SeqI.3 \ - Bio::SeqIO.3 Bio::SeqIO::FTHelper.3 Bio::SeqIO::MultiFile.3 \ - Bio::SeqIO::ace.3 Bio::SeqIO::embl.3 Bio::SeqIO::fasta.3 \ - Bio::SeqIO::game.3 Bio::SeqIO::game::featureHandler.3 \ - Bio::SeqIO::game::idHandler.3 Bio::SeqIO::game::seqHandler.3 \ - Bio::SeqIO::gcg.3 Bio::SeqIO::genbank.3 \ - Bio::SeqIO::largefasta.3 Bio::SeqIO::pir.3 Bio::SeqIO::raw.3 \ - Bio::SeqIO::scf.3 Bio::SeqIO::swiss.3 Bio::SeqUtils.3 \ - Bio::SimpleAlign.3 Bio::Species.3 Bio::Tools::AlignFactory.3 \ - Bio::Tools::AnalysisResult.3 Bio::Tools::BPbl2seq.3 \ - Bio::Tools::BPlite.3 Bio::Tools::BPlite::Iteration.3 \ - Bio::Tools::BPpsilite.3 Bio::Tools::Blast.3 \ - Bio::Tools::Blast::HSP.3 Bio::Tools::Blast::HTML.3 \ - Bio::Tools::Blast::Run::LocalBlast.3 \ - Bio::Tools::Blast::Run::Webblast.3 Bio::Tools::Blast::Sbjct.3 \ - Bio::Tools::CodonTable.3 Bio::Tools::EPCR.3 \ - Bio::Tools::ESTScan.3 Bio::Tools::Fasta.3 Bio::Tools::GFF.3 \ - Bio::Tools::Genemark.3 Bio::Tools::Genscan.3 \ - Bio::Tools::Grail.3 Bio::Tools::HMMER::Domain.3 \ - Bio::Tools::HMMER::Results.3 Bio::Tools::HMMER::Set.3 \ - Bio::Tools::IUPAC.3 Bio::Tools::MZEF.3 Bio::Tools::OddCodes.3 \ - Bio::Tools::Prediction::Exon.3 Bio::Tools::Prediction::Gene.3 \ - Bio::Tools::RestrictionEnzyme.3 \ - Bio::Tools::Run::Alignment::Clustalw.3 \ - Bio::Tools::Run::Alignment::TCoffee.3 \ - Bio::Tools::Run::EMBOSSApplication.3 \ - Bio::Tools::Run::RemoteBlast.3 \ - Bio::Tools::Run::StandAloneBlast.3 Bio::Tools::SeqAnal.3 \ - Bio::Tools::SeqPattern.3 Bio::Tools::SeqStats.3 \ - Bio::Tools::SeqWords.3 Bio::Tools::Sigcleave.3 \ - Bio::Tools::Sim4::Exon.3 Bio::Tools::Sim4::Results.3 \ - Bio::Tools::WWW.3 Bio::Tools::pSW.3 Bio::UnivAln.3 \ - Bio::Variation::AAChange.3 Bio::Variation::AAReverseMutate.3 \ - Bio::Variation::Allele.3 Bio::Variation::DNAMutation.3 \ - Bio::Variation::IO.3 Bio::Variation::IO::flat.3 \ - Bio::Variation::IO::xml.3 Bio::Variation::RNAChange.3 \ - Bio::Variation::SeqDiff.3 Bio::Variation::VariantI.3 \ - bioback.3 biodesign.3 bioperl.3 biostart.3 bptutorial.3 -.if defined(WITH_CORBA_CLIENT) -MAN3+= Bio::CorbaClient::PrimarySeq.3 Bio::CorbaClient::Seq.3 \ - Bio::CorbaClient::SeqFeature.3 Bio::CorbaClient::Base.3 \ - Bio::SeqIO::biocorba.3 Bio::DB::Biocorba.3 \ - Bio::CorbaClient::Client.3 Bio::CorbaClient::ORB.3 -.endif -.if defined(WITH_CORBA_SERVER) -MAN3+= Bio::CorbaServer::BioEnv.3 Bio::CorbaServer::AnonymousSeq.3 \ - Bio::CorbaServer::PrimarySeq.3 Bio::CorbaServer::SeqFeature.3 \ - Bio::CorbaServer::PrimarySeqDB.3 \ - Bio::CorbaServer::PrimarySeqIterator.3 \ - Bio::CorbaServer::PrimarySeqVector.3 \ - Bio::CorbaServer::Seq.3 \ - Bio::CorbaServer::SeqDB.3 Bio::CorbaServer::Base.3 \ - Bio::CorbaServer::SeqFeatureIterator.3 \ - Bio::CorbaServer::SeqFeatureVector.3 \ - Bio::CorbaServer::Server.3 -.endif -.if defined(WITH_GUI) -MAN3+= Bio::Tk::HitDisplay.3 Bio::Tk::SeqCanvas.3 -.endif +.include <bsd.port.pre.mk> + +# Include the (extremely) long list of manpages from a separate file: +.include "${FILESDIR}/Makefile.man" MANPREFIX= ${PREFIX}/lib/perl5/${PERL_VERSION} pre-fetch: @@ -227,4 +109,4 @@ post-install: ${MAKEFILE} ${MAKE_ARGS} ${INSTALL_TARGET} .endfor -.include <bsd.port.mk> +.include <bsd.port.post.mk> diff --git a/biology/p5-bioperl-devel/files/Makefile.man b/biology/p5-bioperl-devel/files/Makefile.man new file mode 100644 index 000000000000..4d3b300f0cb9 --- /dev/null +++ b/biology/p5-bioperl-devel/files/Makefile.man @@ -0,0 +1,235 @@ +# $FreeBSD$ + +MAN3= Bio::AlignIO.3 \ + Bio::AlignIO::bl2seq.3 \ + Bio::AlignIO::clustalw.3 \ + Bio::AlignIO::fasta.3 \ + Bio::AlignIO::mase.3 \ + Bio::AlignIO::meme.3 \ + Bio::AlignIO::msf.3 \ + Bio::AlignIO::nexus.3 \ + Bio::AlignIO::pfam.3 \ + Bio::AlignIO::phylip.3 \ + Bio::AlignIO::prodom.3 \ + Bio::AlignIO::selex.3 \ + Bio::AlignIO::stockholm.3 \ + Bio::Annotation.3 \ + Bio::Annotation::Comment.3 \ + Bio::Annotation::DBLink.3 \ + Bio::Annotation::Reference.3 \ + Bio::DB::Ace.3 \ + Bio::DB::EMBL.3 \ + Bio::DB::Fasta.3 \ + Bio::DB::GDB.3 \ + Bio::DB::GFF.3 \ + Bio::DB::GFF::Adaptor::dbi.3 \ + Bio::DB::GFF::Aggregator.3 \ + Bio::DB::GFF::Aggregator::alignment.3 \ + Bio::DB::GFF::Aggregator::clone.3 \ + Bio::DB::GFF::Aggregator::none.3 \ + Bio::DB::GFF::Aggregator::transcript.3 \ + Bio::DB::GFF::Featname.3 \ + Bio::DB::GFF::Feature.3 \ + Bio::DB::GFF::Homol.3 \ + Bio::DB::GFF::RelSegment.3 \ + Bio::DB::GFF::Segment.3 \ + Bio::DB::GFF::Typename.3 \ + Bio::DB::GenBank.3 \ + Bio::DB::GenPept.3 \ + Bio::DB::NCBIHelper.3 \ + Bio::DB::RandomAccessI.3 \ + Bio::DB::SeqI.3 \ + Bio::DB::SwissProt.3 \ + Bio::DB::Universal.3 \ + Bio::DB::UpdateableSeqI.3 \ + Bio::DB::WebDBSeqI.3 \ + Bio::DBLinkContainerI.3 \ + Bio::Factory::ApplicationFactoryI.3 \ + Bio::Factory::DriverFactory.3 \ + Bio::Factory::EMBOSS.3 \ + Bio::Factory::SeqAnalysisParserFactory.3 \ + Bio::Factory::SeqAnalysisParserFactoryI.3 \ + Bio::Index::Abstract.3 \ + Bio::Index::AbstractSeq.3 \ + Bio::Index::EMBL.3 \ + Bio::Index::Fasta.3 \ + Bio::Index::GenBank.3 \ + Bio::Index::SwissPfam.3 \ + Bio::Index::Swissprot.3 \ + Bio::LiveSeq::AARange.3 \ + Bio::LiveSeq::Chain.3 \ + Bio::LiveSeq::ChainI.3 \ + Bio::LiveSeq::DNA.3 \ + Bio::LiveSeq::Exon.3 \ + Bio::LiveSeq::Gene.3 \ + Bio::LiveSeq::IO::BioPerl.3 \ + Bio::LiveSeq::IO::Loader.3 \ + Bio::LiveSeq::IO::SRS.3 \ + Bio::LiveSeq::Intron.3 \ + Bio::LiveSeq::Mutation.3 \ + Bio::LiveSeq::Mutator.3 \ + Bio::LiveSeq::Prim_Transcript.3 \ + Bio::LiveSeq::Range.3 \ + Bio::LiveSeq::Repeat_Region.3 \ + Bio::LiveSeq::Repeat_Unit.3 \ + Bio::LiveSeq::SeqI.3 \ + Bio::LiveSeq::Transcript.3 \ + Bio::LiveSeq::Translation.3 \ + Bio::LocatableSeq.3 \ + Bio::Location::AvWithinCoordPolicy.3 \ + Bio::Location::CoordinatePolicyI.3 \ + Bio::Location::Fuzzy.3 \ + Bio::Location::FuzzyLocationI.3 \ + Bio::Location::NarrowestCoordPolicy.3 \ + Bio::Location::Simple.3 \ + Bio::Location::Split.3 \ + Bio::Location::SplitLocationI.3 \ + Bio::Location::WidestCoordPolicy.3 \ + Bio::LocationI.3 \ + Bio::PrimarySeq.3 \ + Bio::PrimarySeqI.3 \ + Bio::Range.3 \ + Bio::RangeI.3 \ + Bio::Root::Err.3 \ + Bio::Root::Global.3 \ + Bio::Root::IO.3 \ + Bio::Root::IOManager.3 \ + Bio::Root::Object.3 \ + Bio::Root::RootI.3 \ + Bio::Root::Utilities.3 \ + Bio::Root::Vector.3 \ + Bio::Root::Xref.3 \ + Bio::SearchDist.3 \ + Bio::Seq.3 \ + Bio::Seq::LargePrimarySeq.3 \ + Bio::Seq::LargeSeq.3 \ + Bio::Seq::RichSeq.3 \ + Bio::Seq::RichSeqI.3 \ + Bio::SeqAnalysisParserI.3 \ + Bio::SeqFeature::Computation.3 \ + Bio::SeqFeature::Exon.3 \ + Bio::SeqFeature::FeaturePair.3 \ + Bio::SeqFeature::Gene::Exon.3 \ + Bio::SeqFeature::Gene::ExonI.3 \ + Bio::SeqFeature::Gene::GeneStructure.3 \ + Bio::SeqFeature::Gene::GeneStructureI.3 \ + Bio::SeqFeature::Gene::Transcript.3 \ + Bio::SeqFeature::Gene::TranscriptI.3 \ + Bio::SeqFeature::Generic.3 \ + Bio::SeqFeature::Intron.3 \ + Bio::SeqFeature::PolyA.3 \ + Bio::SeqFeature::Promoter.3 \ + Bio::SeqFeature::Similarity.3 \ + Bio::SeqFeature::SimilarityPair.3 \ + Bio::SeqFeature::UTR3.3 \ + Bio::SeqFeature::UTR5.3 \ + Bio::SeqFeatureI.3 \ + Bio::SeqI.3 \ + Bio::SeqIO.3 \ + Bio::SeqIO::FTHelper.3 \ + Bio::SeqIO::MultiFile.3 \ + Bio::SeqIO::ace.3 \ + Bio::SeqIO::embl.3 \ + Bio::SeqIO::fasta.3 \ + Bio::SeqIO::game.3 \ + Bio::SeqIO::game::featureHandler.3 \ + Bio::SeqIO::game::idHandler.3 \ + Bio::SeqIO::game::seqHandler.3 \ + Bio::SeqIO::gcg.3 \ + Bio::SeqIO::genbank.3 \ + Bio::SeqIO::largefasta.3 \ + Bio::SeqIO::pir.3 \ + Bio::SeqIO::raw.3 \ + Bio::SeqIO::scf.3 \ + Bio::SeqIO::swiss.3 \ + Bio::SeqUtils.3 \ + Bio::SimpleAlign.3 \ + Bio::Species.3 \ + Bio::Tools::AlignFactory.3 \ + Bio::Tools::AnalysisResult.3 \ + Bio::Tools::BPbl2seq.3 \ + Bio::Tools::BPlite.3 \ + Bio::Tools::BPlite::Iteration.3 \ + Bio::Tools::BPpsilite.3 \ + Bio::Tools::Blast.3 \ + Bio::Tools::Blast::HSP.3 \ + Bio::Tools::Blast::HTML.3 \ + Bio::Tools::Blast::Run::LocalBlast.3 \ + Bio::Tools::Blast::Run::Webblast.3 \ + Bio::Tools::Blast::Sbjct.3 \ + Bio::Tools::CodonTable.3 \ + Bio::Tools::EPCR.3 \ + Bio::Tools::ESTScan.3 \ + Bio::Tools::Fasta.3 \ + Bio::Tools::GFF.3 \ + Bio::Tools::Genemark.3 \ + Bio::Tools::Genscan.3 \ + Bio::Tools::Grail.3 \ + Bio::Tools::HMMER::Domain.3 \ + Bio::Tools::HMMER::Results.3 \ + Bio::Tools::HMMER::Set.3 \ + Bio::Tools::IUPAC.3 \ + Bio::Tools::MZEF.3 \ + Bio::Tools::OddCodes.3 \ + Bio::Tools::Prediction::Exon.3 \ + Bio::Tools::Prediction::Gene.3 \ + Bio::Tools::RestrictionEnzyme.3 \ + Bio::Tools::Run::Alignment::Clustalw.3 \ + Bio::Tools::Run::Alignment::TCoffee.3 \ + Bio::Tools::Run::EMBOSSApplication.3 \ + Bio::Tools::Run::RemoteBlast.3 \ + Bio::Tools::Run::StandAloneBlast.3 \ + Bio::Tools::SeqAnal.3 \ + Bio::Tools::SeqPattern.3 \ + Bio::Tools::SeqStats.3 \ + Bio::Tools::SeqWords.3 \ + Bio::Tools::Sigcleave.3 \ + Bio::Tools::Sim4::Exon.3 \ + Bio::Tools::Sim4::Results.3 \ + Bio::Tools::WWW.3 \ + Bio::Tools::pSW.3 \ + Bio::UnivAln.3 \ + Bio::Variation::AAChange.3 \ + Bio::Variation::AAReverseMutate.3 \ + Bio::Variation::Allele.3 \ + Bio::Variation::DNAMutation.3 \ + Bio::Variation::IO.3 \ + Bio::Variation::IO::flat.3 \ + Bio::Variation::IO::xml.3 \ + Bio::Variation::RNAChange.3 \ + Bio::Variation::SeqDiff.3 \ + Bio::Variation::VariantI.3 \ + bioback.3 \ + biodesign.3 \ + bioperl.3 \ + biostart.3 \ + bptutorial.3 +.if defined(WITH_CORBA_CLIENT) +MAN3+= Bio::CorbaClient::PrimarySeq.3 \ + Bio::CorbaClient::Seq.3 \ + Bio::CorbaClient::SeqFeature.3 \ + Bio::CorbaClient::Base.3 \ + Bio::SeqIO::biocorba.3 \ + Bio::DB::Biocorba.3 \ + Bio::CorbaClient::Client.3 \ + Bio::CorbaClient::ORB.3 +.endif +.if defined(WITH_CORBA_SERVER) +MAN3+= Bio::CorbaServer::BioEnv.3 \ + Bio::CorbaServer::AnonymousSeq.3 \ + Bio::CorbaServer::PrimarySeq.3 \ + Bio::CorbaServer::SeqFeature.3 \ + Bio::CorbaServer::PrimarySeqDB.3 \ + Bio::CorbaServer::PrimarySeqIterator.3 \ + Bio::CorbaServer::PrimarySeqVector.3 \ + Bio::CorbaServer::Seq.3 \ + Bio::CorbaServer::SeqDB.3 \ + Bio::CorbaServer::Base.3 \ + Bio::CorbaServer::SeqFeatureIterator.3 \ + Bio::CorbaServer::SeqFeatureVector.3 \ + Bio::CorbaServer::Server.3 +.endif +.if defined(WITH_GUI) +MAN3+= Bio::Tk::HitDisplay.3 \ + Bio::Tk::SeqCanvas.3 +.endif |