diff options
author | Akinori MUSHA <knu@FreeBSD.org> | 2003-02-21 11:08:38 +0000 |
---|---|---|
committer | Akinori MUSHA <knu@FreeBSD.org> | 2003-02-21 11:08:38 +0000 |
commit | 57f9198bc7170af6fb3117c9c9ecdd3715a6e658 (patch) | |
tree | 4a5a9bdf223482c4125def32b555e0628048d584 /biology | |
parent | Update to 0.9.0 [1] (diff) |
De-pkg-comment.
Notes
Notes:
svn path=/head/; revision=76030
Diffstat (limited to 'biology')
72 files changed, 36 insertions, 36 deletions
diff --git a/biology/L-Breeder/Makefile b/biology/L-Breeder/Makefile index 5c0d599afff5..f87750ea2128 100644 --- a/biology/L-Breeder/Makefile +++ b/biology/L-Breeder/Makefile @@ -13,6 +13,7 @@ DISTNAME= LBreeder EXTRACT_SUFX= .tgz MAINTAINER= dyeske@yahoo.com +COMMENT= Allows you to display and breed L-system forms LIB_DEPENDS= wx_gtk-2.2_gl.2:${PORTSDIR}/x11-toolkits/wxgtk diff --git a/biology/L-Breeder/pkg-comment b/biology/L-Breeder/pkg-comment deleted file mode 100644 index 2d2b670048c4..000000000000 --- a/biology/L-Breeder/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Allows you to display and breed L-system forms diff --git a/biology/act/Makefile b/biology/act/Makefile index 4c8b43fc33c0..d19ea54476f1 100644 --- a/biology/act/Makefile +++ b/biology/act/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www.sanger.ac.uk/Software/ACT/v1/ DISTNAME= act_compiled_v1 MAINTAINER= chuynh@biolateral.com.au +COMMENT= A DNA sequence comparison viewer based on Artemis RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 diff --git a/biology/act/pkg-comment b/biology/act/pkg-comment deleted file mode 100644 index 0e5bfabd633a..000000000000 --- a/biology/act/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A DNA sequence comparison viewer based on Artemis diff --git a/biology/artemis/Makefile b/biology/artemis/Makefile index 58af9beae029..6c8943436d34 100644 --- a/biology/artemis/Makefile +++ b/biology/artemis/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www.sanger.ac.uk/Software/Artemis/v4/ DISTNAME= artemis_compiled_v4 MAINTAINER= chuynh@biolateral.com.au +COMMENT= A DNA sequence viewer and annotation tool RUN_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/jdk13 diff --git a/biology/artemis/pkg-comment b/biology/artemis/pkg-comment deleted file mode 100644 index 26b8a15a2327..000000000000 --- a/biology/artemis/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A DNA sequence viewer and annotation tool diff --git a/biology/avida/Makefile b/biology/avida/Makefile index d02462e1fd4f..a4576c8c5991 100644 --- a/biology/avida/Makefile +++ b/biology/avida/Makefile @@ -11,6 +11,7 @@ CATEGORIES= biology MASTER_SITES= http://dllab.caltech.edu/avida/versions/ MAINTAINER= karlj000@unbc.ca +COMMENT= Avida is an auto-adaptive genetic system designed for ALife research WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION:C/\.[[:alnum:]]+$//} USE_GMAKE= yes diff --git a/biology/avida/pkg-comment b/biology/avida/pkg-comment deleted file mode 100644 index 7d166f5a2674..000000000000 --- a/biology/avida/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Avida is an auto-adaptive genetic system designed for ALife research diff --git a/biology/biojava/Makefile b/biology/biojava/Makefile index e12d2b89f18c..4ba800438866 100644 --- a/biology/biojava/Makefile +++ b/biology/biojava/Makefile @@ -11,6 +11,7 @@ CATEGORIES= biology java MASTER_SITES= http://www.biojava.org/download/source/ MAINTAINER= bio@freebsd.net +COMMENT= Open-source java tools for processing biological data BUILD_DEPENDS= ${JAVA_COMMAND}:${PORTSDIR}/java/linux-sun-jdk12 diff --git a/biology/biojava/pkg-comment b/biology/biojava/pkg-comment deleted file mode 100644 index bb2f70c7749d..000000000000 --- a/biology/biojava/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Open-source java tools for processing biological data diff --git a/biology/chemeq/Makefile b/biology/chemeq/Makefile index 576e4f8a137a..e45ad7fb2ca9 100644 --- a/biology/chemeq/Makefile +++ b/biology/chemeq/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://boltz.univ-littoral.fr/pub/chemeq/ DISTNAME= chemeq-V110-1 MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Outputs LaTeX code for chemical reaction WRKSRC= ${WRKDIR}/${PORTNAME} diff --git a/biology/chemeq/pkg-comment b/biology/chemeq/pkg-comment deleted file mode 100644 index eda310fc4609..000000000000 --- a/biology/chemeq/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Outputs LaTeX code for chemical reaction diff --git a/biology/crimap/Makefile b/biology/crimap/Makefile index e5ecc9ad9857..3899c1007173 100644 --- a/biology/crimap/Makefile +++ b/biology/crimap/Makefile @@ -13,6 +13,7 @@ DISTNAME= ${PORTNAME}.source EXTRACT_SUFX= .tar.Z MAINTAINER= tonym@biolateral.com.au +COMMENT= Creation of multilocus linkage maps NO_WRKSUBDIR= true diff --git a/biology/crimap/pkg-comment b/biology/crimap/pkg-comment deleted file mode 100644 index 3ce04b017c81..000000000000 --- a/biology/crimap/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Creation of multilocus linkage maps diff --git a/biology/deft/Makefile b/biology/deft/Makefile index c8442a259b01..eae57c0484bf 100644 --- a/biology/deft/Makefile +++ b/biology/deft/Makefile @@ -14,6 +14,7 @@ DISTNAME= DeFT_${PORTVERSION} EXTRACT_SUFX= .tar.Z MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Density functional molecular orbital calculation WRKSRC= ${WRKDIR}/${DISTNAME}/source USE_REINPLACE= yes diff --git a/biology/deft/pkg-comment b/biology/deft/pkg-comment deleted file mode 100644 index 8687579a4d16..000000000000 --- a/biology/deft/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Density functional molecular orbital calculation diff --git a/biology/dna-qc/Makefile b/biology/dna-qc/Makefile index 0b2aea9b7e4a..4d2cde303042 100644 --- a/biology/dna-qc/Makefile +++ b/biology/dna-qc/Makefile @@ -13,6 +13,7 @@ DISTNAME= qc EXTRACT_SUFX= .tar.Z MAINTAINER= tonym@biolateral.com.au +COMMENT= A quality control algorithm for DNA sequencing projects NO_WRKSUBDIR= true USE_REINPLACE= yes diff --git a/biology/dna-qc/pkg-comment b/biology/dna-qc/pkg-comment deleted file mode 100644 index 38f03537d32c..000000000000 --- a/biology/dna-qc/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A quality control algorithm for DNA sequencing projects diff --git a/biology/fastdnaml/Makefile b/biology/fastdnaml/Makefile index 9a42e40174a1..250973678de2 100644 --- a/biology/fastdnaml/Makefile +++ b/biology/fastdnaml/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://geta.life.uiuc.edu:80/~gary/programs/fastDNAml/ DISTNAME= fastDNAml_${PORTVERSION} MAINTAINER= mzaki@e-mail.ne.jp +COMMENT= The faster variant of DNAML, makes phylogenetic trees using maximum likelihood USE_GMAKE= yes do-build: diff --git a/biology/fastdnaml/pkg-comment b/biology/fastdnaml/pkg-comment deleted file mode 100644 index 82a9f02fa95f..000000000000 --- a/biology/fastdnaml/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -The faster variant of DNAML, makes phylogenetic trees using maximum likelihood diff --git a/biology/flip/Makefile b/biology/flip/Makefile index c4ce9c456b3b..4901282817b5 100644 --- a/biology/flip/Makefile +++ b/biology/flip/Makefile @@ -11,6 +11,7 @@ CATEGORIES= biology MASTER_SITES= ftp://megasun.bch.umontreal.ca/pub/flip/ MAINTAINER= tonym@biolateral.com.au +COMMENT= Flip is used to find/translate orfs USE_REINPLACE= yes diff --git a/biology/flip/pkg-comment b/biology/flip/pkg-comment deleted file mode 100644 index c7bc7af7820a..000000000000 --- a/biology/flip/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Flip is used to find/translate orfs diff --git a/biology/gff2ps/Makefile b/biology/gff2ps/Makefile index d87036ccc09a..52d708a2adfc 100644 --- a/biology/gff2ps/Makefile +++ b/biology/gff2ps/Makefile @@ -13,6 +13,7 @@ MASTER_SITES= ftp://www1.imim.es/pub/gff_tools/gff2ps/ \ DISTFILES= ${PORTNAME}_v${PORTVERSION}.gz ${GFF2PS_MAN}.gz MAINTAINER= chuynh@biolateral.com.au +COMMENT= Converts gff-formated genomic data-sets to PostScript RUN_DEPENDS= gawk:${PORTSDIR}/lang/gawk \ bash:${PORTSDIR}/shells/bash2 diff --git a/biology/gff2ps/pkg-comment b/biology/gff2ps/pkg-comment deleted file mode 100644 index 6b164c3b4a56..000000000000 --- a/biology/gff2ps/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Converts gff-formated genomic data-sets to PostScript diff --git a/biology/gperiodic/Makefile b/biology/gperiodic/Makefile index b0f21fdf50b6..2d9f9ee19540 100644 --- a/biology/gperiodic/Makefile +++ b/biology/gperiodic/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://ftp.seul.org/pub/gperiodic/ \ http://www.unixpages.org/distfiles/ MAINTAINER= chris@unixpages.org +COMMENT= Displays a periodic table of the elements USE_X_PREFIX= yes USE_GNOMENG= yes diff --git a/biology/gperiodic/pkg-comment b/biology/gperiodic/pkg-comment deleted file mode 100644 index 40bed32d9565..000000000000 --- a/biology/gperiodic/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Displays a periodic table of the elements diff --git a/biology/grappa/Makefile b/biology/grappa/Makefile index f0952d3a0e6e..f957b7aaef27 100644 --- a/biology/grappa/Makefile +++ b/biology/grappa/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www.cs.unm.edu/~moret/ DISTNAME= GRAPPA-1.03 MAINTAINER= dbader@eece.unm.edu +COMMENT= Genome Rearrangements Analysis and Phylogeny Software BUILD_DEPENDS= ${LOCALBASE}/lib/libconcorde.a:${PORTSDIR}/math/concorde diff --git a/biology/grappa/pkg-comment b/biology/grappa/pkg-comment deleted file mode 100644 index 42cf72c3f8ed..000000000000 --- a/biology/grappa/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Genome Rearrangements Analysis and Phylogeny Software diff --git a/biology/kinemage/Makefile b/biology/kinemage/Makefile index 4dbeaae0914c..a81f9ea02003 100644 --- a/biology/kinemage/Makefile +++ b/biology/kinemage/Makefile @@ -18,6 +18,7 @@ MASTER_SITE_SUBDIR= will DISTNAME= mage-001120 MAINTAINER= jeremy@external.org +COMMENT= A molecular visualization program with special functions WRKSRC= ${WRKDIR}/${DISTNAME} diff --git a/biology/kinemage/pkg-comment b/biology/kinemage/pkg-comment deleted file mode 100644 index 2558c26bd888..000000000000 --- a/biology/kinemage/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A molecular visualization program with special functions diff --git a/biology/molden/Makefile b/biology/molden/Makefile index 186d7725a315..3a5828334787 100644 --- a/biology/molden/Makefile +++ b/biology/molden/Makefile @@ -14,6 +14,7 @@ EXTRACT_SUFX= .tar.Z EXTRACT_ONLY= ${PORTNAME}${PORTVERSION}.tar.Z MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Display molecular orbitals and electron densities in 2D and 3D USE_XLIB= yes diff --git a/biology/molden/pkg-comment b/biology/molden/pkg-comment deleted file mode 100644 index 669aeabf1dc9..000000000000 --- a/biology/molden/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Display molecular orbitals and electron densities in 2D and 3D diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile index b631b19479db..87cc42fe763f 100644 --- a/biology/mopac/Makefile +++ b/biology/mopac/Makefile @@ -17,6 +17,7 @@ PATCHFILES= mopac7-linux.diff.Z PATCH_DIST_STRIP= -p1 MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation USE_GMAKE= yes diff --git a/biology/mopac/pkg-comment b/biology/mopac/pkg-comment deleted file mode 100644 index 321357a44a72..000000000000 --- a/biology/mopac/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Semi-empirical (MNDO, etc.) molecular orbital calculation diff --git a/biology/nab/Makefile b/biology/nab/Makefile index e57708d2bfac..ac14470a54fb 100644 --- a/biology/nab/Makefile +++ b/biology/nab/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://ftp.scripps.edu/pub/case/ \ http://www.scripps.edu/case/ MAINTAINER= bdodson@scms.utmb.edu +COMMENT= This is nab (nucleic acid builder), a language for macromolecules MAKE_ENV+= NABHOME=${WRKSRC} ARCH= PATH=${WRKSRC}/bin:${PATH} diff --git a/biology/nab/pkg-comment b/biology/nab/pkg-comment deleted file mode 100644 index 98f624d1cacd..000000000000 --- a/biology/nab/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -This is nab (nucleic acid builder), a language for macromolecules diff --git a/biology/ncbi-toolkit/Makefile b/biology/ncbi-toolkit/Makefile index 074eac936b91..4a12fd525b78 100644 --- a/biology/ncbi-toolkit/Makefile +++ b/biology/ncbi-toolkit/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/${PORTVERSION:S/.//g DISTNAME= ncbi MAINTAINER= tonym@biolateral.com.au +COMMENT= NCBI development toolkit, including BLAST 2 and GenBank/Entrez support USE_MOTIF= yes USE_REINPLACE= yes diff --git a/biology/ncbi-toolkit/pkg-comment b/biology/ncbi-toolkit/pkg-comment deleted file mode 100644 index 3afdf3b4fd80..000000000000 --- a/biology/ncbi-toolkit/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -NCBI development toolkit, including BLAST 2 and GenBank/Entrez support diff --git a/biology/nclever/Makefile b/biology/nclever/Makefile index e512c5e14bda..3e6196ce8f7e 100644 --- a/biology/nclever/Makefile +++ b/biology/nclever/Makefile @@ -13,6 +13,7 @@ DISTNAME= ${PORTNAME}${PORTVERSION} EXTRACT_SUFX= .tar.Z MAINTAINER= tonym@biolateral.com.au +COMMENT= NClever is a character-based version of NCBI's Entrez program BUILD_DEPENDS= ${LOCALBASE}/lib/ncbi/libncbi.a:${PORTSDIR}/biology/ncbi-toolkit diff --git a/biology/nclever/pkg-comment b/biology/nclever/pkg-comment deleted file mode 100644 index bcc0475ce55a..000000000000 --- a/biology/nclever/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -NClever is a character-based version of NCBI's Entrez program diff --git a/biology/ortep3/Makefile b/biology/ortep3/Makefile index 971f22cf7737..79a591542844 100644 --- a/biology/ortep3/Makefile +++ b/biology/ortep3/Makefile @@ -15,6 +15,7 @@ DISTFILES= ortep.tar.Z ortep.f EXTRACT_ONLY= ortep.tar.Z MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure .if defined(WITH_PGPLOT) LIB_DEPENDS= pgplot.5:${PORTSDIR}/graphics/pgplot diff --git a/biology/ortep3/pkg-comment b/biology/ortep3/pkg-comment deleted file mode 100644 index d3fe47aa3676..000000000000 --- a/biology/ortep3/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure diff --git a/biology/p5-AcePerl/Makefile b/biology/p5-AcePerl/Makefile index 60a3b56c8f23..115de70a1325 100644 --- a/biology/p5-AcePerl/Makefile +++ b/biology/p5-AcePerl/Makefile @@ -13,6 +13,7 @@ MASTER_SITE_SUBDIR= Ace PKGNAMEPREFIX= p5- MAINTAINER= bio@freebsd.net +COMMENT= Perl5 interface to the ACEDB genome database system BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Digest/MD5.pm:${PORTSDIR}/security/p5-Digest-MD5 RUN_DEPENDS= ${BUILD_DEPENDS} diff --git a/biology/p5-AcePerl/pkg-comment b/biology/p5-AcePerl/pkg-comment deleted file mode 100644 index a93e81fd7380..000000000000 --- a/biology/p5-AcePerl/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Perl5 interface to the ACEDB genome database system diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile index 2552545948f5..d7a4f2d4e827 100644 --- a/biology/phylip/Makefile +++ b/biology/phylip/Makefile @@ -14,6 +14,7 @@ EXTRACT_SUFX= .tar.Z DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} MAINTAINER= dbader@eece.unm.edu +COMMENT= A Phylogeny Inference Package USE_XLIB= yes BUILD_WRKSRC= ${WRKSRC}/src diff --git a/biology/phylip/pkg-comment b/biology/phylip/pkg-comment deleted file mode 100644 index b6a5c95a716e..000000000000 --- a/biology/phylip/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A Phylogeny Inference Package diff --git a/biology/platon/Makefile b/biology/platon/Makefile index f9661254e5c6..868e3a8973c0 100644 --- a/biology/platon/Makefile +++ b/biology/platon/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://xraysoft.chem.uu.nl/pub/unix/ DISTNAME= platon MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Tool for viewing molecular/crystallographic structures # PLATON may be used free of charge by the academic community under # the condition that it is not redistributed for a current & fresh copy. diff --git a/biology/platon/pkg-comment b/biology/platon/pkg-comment deleted file mode 100644 index 891a8693e1d8..000000000000 --- a/biology/platon/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Tool for viewing molecular/crystallographic structures diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile index ecbedd3b61d0..9f425001adb7 100644 --- a/biology/povchem/Makefile +++ b/biology/povchem/Makefile @@ -15,6 +15,7 @@ DISTFILES= povchem.c \ periodic.tab MAINTAINER= frankch@waru.life.nthu.edu.tw +COMMENT= Simple yet powerful tool to generate POV from a PDB file NO_WRKSUBDIR= yes USE_REINPLACE= yes diff --git a/biology/povchem/pkg-comment b/biology/povchem/pkg-comment deleted file mode 100644 index c0d5024801f5..000000000000 --- a/biology/povchem/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Simple yet powerful tool to generate POV from a PDB file diff --git a/biology/primer3/Makefile b/biology/primer3/Makefile index 462fe8a50067..fbfce88afc27 100644 --- a/biology/primer3/Makefile +++ b/biology/primer3/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www-genome.wi.mit.edu/ftp/distribution/software/ DISTNAME= ${PORTNAME}_${PORTVERSION:S/./_/}_test MAINTAINER= tonym@biolateral.com.au +COMMENT= Primer3 helps to choose primers for PCR reactions USE_REINPLACE= yes WRKSRC= ${WRKDIR}/${DISTNAME}/src diff --git a/biology/primer3/pkg-comment b/biology/primer3/pkg-comment deleted file mode 100644 index cdae8a3feb94..000000000000 --- a/biology/primer3/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Primer3 helps to choose primers for PCR reactions diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile index 52aef691e734..6824790443cd 100644 --- a/biology/psi88/Makefile +++ b/biology/psi88/Makefile @@ -14,6 +14,7 @@ DISTNAME= ${PORTNAME} EXTRACT_SUFX= .tar.Z MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Plotting wavefunctions (molecular orbitals) in 3D pre-patch: ${MV} ${WRKSRC}/src/makefile ${WRKSRC}/src/Makefile diff --git a/biology/psi88/pkg-comment b/biology/psi88/pkg-comment deleted file mode 100644 index 00fcd0b7c031..000000000000 --- a/biology/psi88/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Plotting wavefunctions (molecular orbitals) in 3D diff --git a/biology/seqio/Makefile b/biology/seqio/Makefile index cef43ebbeef1..412e2950c0ca 100644 --- a/biology/seqio/Makefile +++ b/biology/seqio/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www.cs.ucdavis.edu/~gusfield/ DISTNAME= ${PORTNAME} MAINTAINER= tonym@biolateral.com.au +COMMENT= A set of C functions which can read/write biological sequence files WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION} diff --git a/biology/seqio/pkg-comment b/biology/seqio/pkg-comment deleted file mode 100644 index ae2200e5e086..000000000000 --- a/biology/seqio/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A set of C functions which can read/write biological sequence files diff --git a/biology/sim4/Makefile b/biology/sim4/Makefile index d7cb05e7c4a3..046ab2cdb24c 100644 --- a/biology/sim4/Makefile +++ b/biology/sim4/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://globin.cse.psu.edu/ftp/dist/sim4/ DISTNAME= ${PORTNAME}.${PORTVERSION:S/./-/g} MAINTAINER= bio@freebsd.net +COMMENT= An algorithm for aligning expressed DNA with genomic sequences WRKSRC= ${WRKDIR}/sim4.${PORTVERSION:S/./-/g} diff --git a/biology/sim4/pkg-comment b/biology/sim4/pkg-comment deleted file mode 100644 index 7e50b5e0e13f..000000000000 --- a/biology/sim4/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -An algorithm for aligning expressed DNA with genomic sequences diff --git a/biology/spdbv/Makefile b/biology/spdbv/Makefile index e7926ec15b7d..7e5934314d63 100644 --- a/biology/spdbv/Makefile +++ b/biology/spdbv/Makefile @@ -20,6 +20,7 @@ MASTER_SITES= http://au.expasy.org/spdbv/program/ \ DISTNAME= ${PORTNAME}${PORTVERSION:C/\.//}-Linux MAINTAINER= chuynh@biolateral.com.au +COMMENT= Deep View Swiss-PdbViewer is a Protein viewer and analysis tool RUN_DEPENDS= ${LINUXBASE}${X11BASE}/lib/libMesaGL.so.3:${PORTSDIR}/graphics/linux_mesa3 \ ${LINUXBASE}${X11BASE}/lib/libXm.so.2:${PORTSDIR}/x11-toolkits/linux-openmotif diff --git a/biology/spdbv/pkg-comment b/biology/spdbv/pkg-comment deleted file mode 100644 index 5f9f33b5bb79..000000000000 --- a/biology/spdbv/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Deep View Swiss-PdbViewer is a Protein viewer and analysis tool diff --git a/biology/tRNAscan-SE/Makefile b/biology/tRNAscan-SE/Makefile index a5f9366e3101..ba593eb3f94a 100644 --- a/biology/tRNAscan-SE/Makefile +++ b/biology/tRNAscan-SE/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://ftp.genetics.wustl.edu/pub/eddy/software/ EXTRACT_SUFX= .tar.Z MAINTAINER= chuynh@biolateral.com.au +COMMENT= An improved tool for transfer RNA detection MAN1= tRNAscan-SE.1 diff --git a/biology/tRNAscan-SE/pkg-comment b/biology/tRNAscan-SE/pkg-comment deleted file mode 100644 index 92cdd3eff0e5..000000000000 --- a/biology/tRNAscan-SE/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -An improved tool for transfer RNA detection diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile index 1c2a97a6a110..1d47724de65a 100644 --- a/biology/tinker/Makefile +++ b/biology/tinker/Makefile @@ -13,6 +13,7 @@ MASTER_SITES= ftp://dasher.wustl.edu/pub/ DISTNAME= ${PORTNAME} MAINTAINER= gjohnson@srrc.ars.usda.gov +COMMENT= A general purpose molecular modelling package MAKE_ENV+= HAVE_G2C=yes INSTALL_PROGRAM="${INSTALL_PROGRAM}" diff --git a/biology/tinker/pkg-comment b/biology/tinker/pkg-comment deleted file mode 100644 index 934f74e4dcbb..000000000000 --- a/biology/tinker/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A general purpose molecular modelling package diff --git a/biology/treepuzzle/Makefile b/biology/treepuzzle/Makefile index 5da85ab92905..534358040ae8 100644 --- a/biology/treepuzzle/Makefile +++ b/biology/treepuzzle/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://www.tree-puzzle.de/ DISTNAME= tree-puzzle-${PORTVERSION} MAINTAINER= jan.lentfer@web.de +COMMENT= Maximum likelihood phylogeny reconstruction using quartets GNU_CONFIGURE= yes CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} diff --git a/biology/treepuzzle/pkg-comment b/biology/treepuzzle/pkg-comment deleted file mode 100644 index f74e1b28b924..000000000000 --- a/biology/treepuzzle/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Maximum likelihood phylogeny reconstruction using quartets diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile index 37011d8c9df7..1043b6b28d7a 100644 --- a/biology/treeviewx/Makefile +++ b/biology/treeviewx/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/ DISTNAME= tv-${PORTVERSION} MAINTAINER= tonym@biolateral.com.au +COMMENT= A phylogenetic tree viewer LIB_DEPENDS= wx_gtk-2.2.2:${PORTSDIR}/x11-toolkits/wxgtk diff --git a/biology/treeviewx/pkg-comment b/biology/treeviewx/pkg-comment deleted file mode 100644 index 727dcca534d0..000000000000 --- a/biology/treeviewx/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -A phylogenetic tree viewer diff --git a/biology/wise/Makefile b/biology/wise/Makefile index f68cd72ee63a..426eb7c161ff 100644 --- a/biology/wise/Makefile +++ b/biology/wise/Makefile @@ -12,6 +12,7 @@ MASTER_SITES= ftp://ftp.sanger.ac.uk/pub/birney/wise2/ DISTNAME= ${PORTNAME}${PORTVERSION} MAINTAINER= tonym@biolateral.com.au +COMMENT= Intelligent algorithms for DNA searches WRKTOP= ${WRKDIR}/${DISTNAME} WRKSRC= ${WRKTOP}/src diff --git a/biology/wise/pkg-comment b/biology/wise/pkg-comment deleted file mode 100644 index 0e362eb59dd9..000000000000 --- a/biology/wise/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Intelligent algorithms for DNA searches diff --git a/biology/xmolwt/Makefile b/biology/xmolwt/Makefile index 9e7d43481633..097e9d2e673d 100644 --- a/biology/xmolwt/Makefile +++ b/biology/xmolwt/Makefile @@ -10,6 +10,7 @@ CATEGORIES= biology MASTER_SITES= http://www.st.hirosaki-u.ac.jp/~rmiya/xmolwt/ MAINTAINER= rmiya@cc.hirosaki-u.ac.jp +COMMENT= Calculate formula weight and percent of each element for a given formula WRKSRC= ${WRKDIR}/${DISTNAME} MAKEFILE= Makefile.gtk diff --git a/biology/xmolwt/pkg-comment b/biology/xmolwt/pkg-comment deleted file mode 100644 index 248528d92f95..000000000000 --- a/biology/xmolwt/pkg-comment +++ /dev/null @@ -1 +0,0 @@ -Calculate formula weight and percent of each element for a given formula |