diff options
| author | Johann Visagie <wjv@FreeBSD.org> | 2001-08-07 08:17:58 +0000 |
|---|---|---|
| committer | Johann Visagie <wjv@FreeBSD.org> | 2001-08-07 08:17:58 +0000 |
| commit | f7b5a60b9b301f1acb5fb61333c31972102bdaf3 (patch) | |
| tree | 4ae3e63a52183f73a63b00c12ab5da52ad024cac /biology | |
| parent | Remove files/patch-ai: it is already in the standard distribution. (diff) | |
Add lamarc 2001.08.06,
a package of programs for computing
population parameters.
Notes
Notes:
svn path=/head/; revision=45915
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/lamarc/Makefile | 26 | ||||
| -rw-r--r-- | biology/lamarc/pkg-comment | 1 | ||||
| -rw-r--r-- | biology/lamarc/pkg-descr | 13 | ||||
| -rw-r--r-- | biology/lamarc/pkg-plist | 1 |
5 files changed, 42 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 9219419b5a96..239061a633f9 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -18,6 +18,7 @@ SUBDIR += grappa SUBDIR += hmmer SUBDIR += kinemage + SUBDIR += lamarc SUBDIR += migrate SUBDIR += molden SUBDIR += mopac diff --git a/biology/lamarc/Makefile b/biology/lamarc/Makefile new file mode 100644 index 000000000000..38dc0c528979 --- /dev/null +++ b/biology/lamarc/Makefile @@ -0,0 +1,26 @@ +# New ports collection makefile for: lamarc +# Date created: 6 August 2001 +# Whom: Johann Visagie <wjv@FreeBSD.org> +# +# $FreeBSD$ +# + +PORTNAME= lamarc +PORTVERSION= 2001.08.06 +CATEGORIES= biology +MASTER_SITES= # empty +DISTFILES= # none +EXTRACT_ONLY= # empty + +MAINTAINER= wjv@FreeBSD.org + +RUN_DEPENDS= coalesce:${PORTSDIR}/biology/coalesce \ + fluctuate:${PORTSDIR}/biology/fluctuate \ + migrate:${PORTSDIR}/biology/migrate \ + recombine:${PORTSDIR}/biology/recombine + +NO_BUILD= yes + +do-install: # empty + +.include <bsd.port.mk> diff --git a/biology/lamarc/pkg-comment b/biology/lamarc/pkg-comment new file mode 100644 index 000000000000..65c98d705236 --- /dev/null +++ b/biology/lamarc/pkg-comment @@ -0,0 +1 @@ +A package of programs for computing population parameters diff --git a/biology/lamarc/pkg-descr b/biology/lamarc/pkg-descr new file mode 100644 index 000000000000..27742c70aa62 --- /dev/null +++ b/biology/lamarc/pkg-descr @@ -0,0 +1,13 @@ +LAMARC (Likelihood Analysis with Metropolis Algorithm using Random +Coalescence) is a package of programs for computing population parameters +such as population size, population growth rate and migration rates. It does +this by using likelihoods for samples of data (sequences, microsatellites, +and electrophoretic polymorphisms) from populations. + +This port does not contain anything by itself; it is a "meta-port" which +installs the four packages that make up LAMARC: Coalesce, Fluctuate, Migrate +and Recombine. + +WWW: http://evolution.genetics.washington.edu/lamarc.html + +-- Johann Visagie <wjv@FreeBSD.org> diff --git a/biology/lamarc/pkg-plist b/biology/lamarc/pkg-plist new file mode 100644 index 000000000000..549a621fec0c --- /dev/null +++ b/biology/lamarc/pkg-plist @@ -0,0 +1 @@ +@comment this plist intentionally left empty |