- Update to version 0.7.1

- Add a build-time message to inform the user of available options.

4 files changed, 24 insertions, 3 deletions

diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile
index 59fb85f02cfb..650a028aa69c 100644
--- a/biology/p5-bioperl/Makefile
+++ b/biology/p5-bioperl/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	bioperl
-PORTVERSION=	0.7.0
+PORTVERSION=	0.7.1
 CATEGORIES=	biology perl5
 MASTER_SITES=	ftp://bioperl.org/pub/DIST/ \
 		http://bioperl.org/Core/Latest/ \
@@ -140,6 +140,12 @@ MAN3+=		Bio::Tk::HitDisplay.3 Bio::Tk::SeqCanvas.3
 .endif
 MANPREFIX=	${PREFIX}/lib/perl5/${PERL_VERSION}
 
+pre-fetch:
+.if !defined(BATCH) && (!defined(WITH_CORBA_CLIENT) || \
+    !defined(WITH_CORBA_SERVER) || !defined(WITH_GUI))
+	@ ${CAT} ${FILESDIR}/ext.msg
+.endif
+
 post-configure:
 	@ cd ${EXT_WRKSRC} && \
 	  ${SETENV} ${CONFIGURE_ENV} \
diff --git a/biology/p5-bioperl/distinfo b/biology/p5-bioperl/distinfo
index d21690e7523e..ef9d77ceb670 100644
--- a/biology/p5-bioperl/distinfo
+++ b/biology/p5-bioperl/distinfo
@@ -1,4 +1,4 @@
-MD5 (bioperl-0.7.0.tar.gz) = 10b4d196346495fdd6f4337bac115776
+MD5 (bioperl-0.7.1.tar.gz) = 9f8cef11102b79418907e3a1b8532f8f
 MD5 (bioperl-ext-0.6.tar.gz) = 5bf87e0cf94d3d41fabbfd209971d240
 MD5 (bioperl-corba-client-0.2.tar.gz) = 9635488e779d771bc5f976bf56826590
 MD5 (bioperl-corba-server-0.2.tar.gz) = d5e3353ed6c8717de06e0db8f5bbc0f5
diff --git a/biology/p5-bioperl/files/ext.msg b/biology/p5-bioperl/files/ext.msg
new file mode 100644
index 000000000000..1ba9af2f5f84
--- /dev/null
+++ b/biology/p5-bioperl/files/ext.msg
@@ -0,0 +1,16 @@
+---------------------------------------------------------------------------
+This port includes support for a number of optional extensions to Bioperl.
+To build the port with these extensions, set the corresponding variables:
+
+To build with client-side CORBA support:	set WITH_CORBA_CLIENT
+To build with server-side CORBA support:	set WITH_CORBA_SERVER
+To build with (experimental) GUI support:	set WITH_GUI
+
+Additionally, the variable WITH_CORBA implies both WITH_CORBA_CLIENT and
+WITH_CORBA_SERVER.
+
+For example, to build and install the Bioperl port with all the currently
+available optional extensions:
+
+  make WITH_CORBA=yes WITH_GUI=yes install
+---------------------------------------------------------------------------
diff --git a/biology/p5-bioperl/pkg-plist b/biology/p5-bioperl/pkg-plist
index 30fa55f0a56b..3c0b78e2315d 100644
--- a/biology/p5-bioperl/pkg-plist
+++ b/biology/p5-bioperl/pkg-plist
@@ -146,7 +146,6 @@ lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/game/seqHandler.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/gcg.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/genbank.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/largefasta.pm
-lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/pir.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/raw.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/scf.pm
 lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/swiss.pm