diff options
| author | Sergey A. Osokin <osa@FreeBSD.org> | 2003-10-22 09:37:18 +0000 |
|---|---|---|
| committer | Sergey A. Osokin <osa@FreeBSD.org> | 2003-10-22 09:37:18 +0000 |
| commit | 958842c5c62d613041843fb197e43834d0e6e7f9 (patch) | |
| tree | 4bddc4d898e1efa8097beab8575712b76311564d /biology | |
| parent | Update to 0.28 (diff) | |
Cosmetic fix: use %%DOCSDIR%% macro.
No functionally changes.
Submitted by: Oleg Karachevtsev <ok@etrust.ru>
A part of PR: 57992
Notes
Notes:
svn path=/head/; revision=91882
Diffstat (limited to 'biology')
31 files changed, 1259 insertions, 1259 deletions
diff --git a/biology/babel/pkg-plist b/biology/babel/pkg-plist index e781099ee265..db3c75dc289d 100644 --- a/biology/babel/pkg-plist +++ b/biology/babel/pkg-plist @@ -5,6 +5,6 @@ share/babel/element.lis share/babel/new.lis share/babel/quanta.lis share/babel/types.lis -%%PORTDOCS%%share/doc/babel/README.1ST -%%PORTDOCS%%@dirrm share/doc/babel +%%PORTDOCS%%%%DOCSDIR%%/README.1ST +%%PORTDOCS%%@dirrm %%DOCSDIR%% @dirrm share/babel diff --git a/biology/biojava/pkg-plist b/biology/biojava/pkg-plist index eb5b8d79dadf..1daa6eec24aa 100644 --- a/biology/biojava/pkg-plist +++ b/biology/biojava/pkg-plist @@ -50,495 +50,495 @@ share/java/biojava-1.01/demos/symbol/TestWindowedSymbolList.java share/java/biojava-1.01/demos/seqviewer/test.fa share/java/biojava-1.01/demos/seqviewer/EmblViewer.java share/java/biojava-1.01/demos/seqviewer/TestSequencePanel.java -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/UnknownHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/_Unknown_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/Unknown.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/_Unknown_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/_UnknownImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/_UnknownStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/UnknownHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/GNOME/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/socket/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/socket/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/socket/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/socket/SocketDriver.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/socket/SocketResultSet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticStringValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticAceNode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticAceObject.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticAceSet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticDateValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticFloatValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticIntValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticModelInclude.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticModelNode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticModelReference.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticModelType.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/StaticReference.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/staticobj/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/AceAnnotation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/AceSequence.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/seq/AceSequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceElement.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceNode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceObject.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceSet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Connection.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Database.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/DateValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Driver.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/FloatValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/IntValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/ModelInclude.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/ModelNode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/ModelReference.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/ModelType.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Reference.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/StringValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Ace.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AcePerlParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceURL.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceUtils.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/Handler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceURLException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/AceError.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/acedb/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/UnableToProcess.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_Seq_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqDB_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Operations.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/AnonymousSeq.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeq.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqIterator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/Seq.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeature.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureIterator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_Seq_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqDB_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqDBImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqDBStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Tie.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqFeatureStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqImplBase.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/_SeqStub.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/EndOfStreamHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/EndOfStreamHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/NameValueSet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/NameValueSetHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/NameValueSetHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/NameValueSetListHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/NameValueSetListHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/OutOfRangeHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/OutOfRangeHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/primaryidListHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/primaryidListHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqDBHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqDBHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqType.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqTypeHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/SeqTypeHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/stringListHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/stringListHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/UnableToProcessHelper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/UnableToProcessHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/EndOfStream.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/OutOfRange.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/RequestTooLarge.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/Biocorba/Seqcore/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/IgnoreRecordException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFDocumentHandler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecord.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFEntrySet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.AbortErrorHandler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.SkipRecordErrorHandler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFFilterer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.AcceptAll.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.FeatureFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SequenceFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SourceFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/GFFWriter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/SequencesAsGFF.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/SimpleGFFRecord.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/gff/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/program/Meme.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelVetoException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/DotState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/DPMatrix.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/EmissionState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/MarkovModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelInState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/State.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/StatePath.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/StoppingCriteria.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/Trainable.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/TrainingAlgorithm.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/TransitionListener.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/TransitionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/WeightMatrix.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/DP.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/AbstractTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/BaumWelchSampler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/BaumWelchTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/DP.ReverseIterator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/DPFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/MagicalState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelChangeEvent.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelView.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ModelView.ViewTransitionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/PairDPMatrix.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/PairwiseDP.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/ProfileHMM.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleDotState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleEmissionState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleMarkovModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleModelInState.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/Transition.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleModelTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleStatePath.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleTransitionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/SimpleWeightMatrix.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/TrainerTransition.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/TransitionEvent.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/WeightMatrixAnnotator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/WMAsMM.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/XmlMarkovModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/IllegalTransitionException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dp/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/SymbolSequenceRenderer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/FeatureRenderer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/SequenceRenderer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/BasicFeatureRenderer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/FeatureBlockSequenceRenderer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/LogoPainter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/SymbolStyle.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/BarLogoPainter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/DistributionLogo.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/DNAStyle.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/PlainStyle.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/SequencePanel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/SequencePanel.Border.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/SimpleSymbolStyle.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/gui/TextLogoPainter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/UniformDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/Distribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/DistributionFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/DistributionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/DistributionTrainerContext.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/AbstractDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/ComplementaryDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/DistributionFactory.DefaultDistributionFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/DNADistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/GapDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/IgnoreCountsTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/PairDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/SimpleDistribution.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainerContext.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/dist/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchSubHit.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SeqSimilaritySearcher.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SeqSimilaritySearchHit.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SeqSimilaritySearchResult.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SeqSimilaritySearchSubHit.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchHit.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchResult.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/search/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/SimpleSequenceDBInstallation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/IDMaker.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/SequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/SequenceDBInstallation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/AnnotatedSequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/CachingSequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/HashSequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/IDMaker.ByName.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/IDMaker.ByURN.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/IndexedSequenceDB.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/db/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/StreamWriter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/AlignmentFormat.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/FastaDescriptionReader.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/FeatureBuilder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/SequenceFormat.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/DefaultDescriptionReader.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/EmblFormat.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/FastaFormat.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/GenbankFormat.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/SimpleFeatureBuilder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/StreamReader.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/StreamReader.Context.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/io/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/Feature.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureRealizer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/RealizingFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/Sequence.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SequenceAnnotator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SequenceFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SequenceIterator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/StrandedFeature.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/AbstractFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/DNATools.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/Feature.Template.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.AcceptAllFilter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.And.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.BySource.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.ByType.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.ContainedByLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.Not.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.Or.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureFilter.OverlapsLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/FeatureHolder.EmptyFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/GeneticCode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/MergeFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/ProteinTools.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SimpleFeatureHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SimpleFeatureRealizer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SimpleSequence.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/SimpleSequenceFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/StrandedFeature.Strand.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/StrandedFeature.Template.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/ViewSequence.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/seq/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/IllegalSymbolException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Alignment.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Alphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AtomicSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/CrossProductAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/CrossProductSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/FiniteAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Location.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Symbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SymbolParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/TranslationTable.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AbstractAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AbstractSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AllTokensAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Alphabet.EmptyAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AlphabetManager.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/AlphabetManager.ListWrapper.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/CompoundLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/CrossProductSymbolNameParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.DoubleSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/FixedWidthParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/GappedSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.IntegerSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Location.EmptyLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/Location.LocationComparator.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/NameParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/OrderNSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/PointLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/RangeLocation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/ReverseSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleAlignment.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleAtomicSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleSymbol.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SimpleTranslationTable.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SingletonAlphabet.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SuffixTree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SuffixTree.SuffixNode.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/SymbolList.EmptySymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/TokenParser.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/TranslatedSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/WindowedSymbolList.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/IllegalAlphabetException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/symbol/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/SimpleAnnotation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/BioException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/BioError.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/Annotatable.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/Annotation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/Annotation.EmptyAnnotation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bio/OverlayAnnotation.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SymbolListAdapter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/AnonymousSeqImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/FeatureAdapter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqDBImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqIteratorImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqDBImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureIteratorImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceAdapter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceDBAdapter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceIteratorAdapter.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/GNOME/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/GNOME/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/GNOME/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/bridge/GNOME/UnknownImpl.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/TrainRegression.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.DepthScaler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.PointClassifier.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/Classify.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.MultipleScalar.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.NullModelScaler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.SelectionScalar.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.UniformScaler.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SVM_Light.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/SVM_Light.LabelledVector.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/Train.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/tools/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/ItemValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SVMClassifierModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SVMKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SVMTarget.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/TrainingContext.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/TrainingListener.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/AbstractSVMClassifierModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/AbstractSVMTarget.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/CachingKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/DiagonalAddKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/DiagonalCachingKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/LinearKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/ListSumKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SMOTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/NestedKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/NormalizingKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/PolynomialKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/RadialBaseKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SigmoidKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SimpleItemValue.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SimpleSVMClassifierModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SimpleSVMTarget.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SMORegressionTrainer.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SparseVector.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SparseVector.NormalizingKernel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/SVMRegressionModel.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/stats/svm/TrainingEvent.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/Contract.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/AssertionFailedException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/PostconditionNotMetException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/contract/PreconditionNotMetException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/XMLPeerFactory.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/XMLDispatcher.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/xml/XMLPeerBuilder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/package-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/ObjectUtil.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/StaticMemberPlaceHolder.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/TypedProperties.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/package-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/ParserException.html -%%PORTDOCS%%share/doc/biojava-1.01/api/org/biojava/utils/package-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/deprecated-list.html -%%PORTDOCS%%share/doc/biojava-1.01/api/allclasses-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/index.html -%%PORTDOCS%%share/doc/biojava-1.01/api/packages.html -%%PORTDOCS%%share/doc/biojava-1.01/api/overview-summary.html -%%PORTDOCS%%share/doc/biojava-1.01/api/overview-frame.html -%%PORTDOCS%%share/doc/biojava-1.01/api/serialized-form.html -%%PORTDOCS%%share/doc/biojava-1.01/api/package-list -%%PORTDOCS%%share/doc/biojava-1.01/api/help-doc.html -%%PORTDOCS%%share/doc/biojava-1.01/api/overview-tree.html -%%PORTDOCS%%share/doc/biojava-1.01/api/stylesheet.css -%%PORTDOCS%%share/doc/biojava-1.01/api/index-all.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/UnknownHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_Unknown_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/Unknown.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_Unknown_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_UnknownImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/_UnknownStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/UnknownHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/GNOME/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/SocketDriver.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/socket/SocketResultSet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticStringValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceNode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceObject.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticAceSet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticDateValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticFloatValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticIntValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelInclude.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelNode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelReference.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticModelType.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/StaticReference.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/staticobj/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceAnnotation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceSequence.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/seq/AceSequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceElement.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceNode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceObject.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceSet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Connection.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Database.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/DateValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Driver.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/FloatValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/IntValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelInclude.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelNode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelReference.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/ModelType.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Reference.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/StringValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Ace.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AcePerlParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceURL.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceUtils.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/Handler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceURLException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/AceError.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/acedb/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcess.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_Seq_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDB_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Operations.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeq.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeq.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIterator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/Seq.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeature.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIterator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeq_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_AnonymousSeqStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeq_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDB_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqDBStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIterator_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_PrimarySeqIteratorStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_Seq_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDB_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDBImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqDBStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeature_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIterator_Tie.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureIteratorStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqFeatureStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqImplBase.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/_SeqStub.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/AnonymousSeqHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStreamHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStreamHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetListHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/NameValueSetListHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRangeHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRangeHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/primaryidListHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/primaryidListHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqDBHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/PrimarySeqIteratorHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLargeHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDBHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqDBHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureIteratorHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqFeatureListHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqType.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqTypeHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/SeqTypeHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/stringListHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/stringListHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcessHelper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/UnableToProcessHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/EndOfStream.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/OutOfRange.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/RequestTooLarge.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/IgnoreRecordException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFDocumentHandler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecord.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFEntrySet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.AbortErrorHandler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFErrorHandler.SkipRecordErrorHandler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFFilterer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.AcceptAll.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.FeatureFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SequenceFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFRecordFilter.SourceFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/GFFWriter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/SequencesAsGFF.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/SimpleGFFRecord.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/program/Meme.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelVetoException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DotState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DPMatrix.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/EmissionState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/MarkovModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelInState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/State.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/StatePath.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/StoppingCriteria.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/Trainable.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TrainingAlgorithm.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionListener.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WeightMatrix.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DP.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/AbstractTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/BaumWelchSampler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/BaumWelchTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DP.ReverseIterator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/DPFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/MagicalState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelChangeEvent.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelView.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ModelView.ViewTransitionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/PairDPMatrix.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/PairwiseDP.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/ProfileHMM.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleDotState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleEmissionState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleMarkovModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleModelInState.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/Transition.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleModelTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleStatePath.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleTransitionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/SimpleWeightMatrix.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TrainerTransition.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/TransitionEvent.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WeightMatrixAnnotator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/WMAsMM.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/XmlMarkovModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/IllegalTransitionException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dp/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/SymbolSequenceRenderer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/FeatureRenderer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/SequenceRenderer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/BasicFeatureRenderer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/FeatureBlockSequenceRenderer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/LogoPainter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SymbolStyle.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/BarLogoPainter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/DistributionLogo.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/DNAStyle.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/PlainStyle.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SequencePanel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SequencePanel.Border.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/SimpleSymbolStyle.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/gui/TextLogoPainter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/UniformDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/Distribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionTrainerContext.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/AbstractDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/ComplementaryDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DistributionFactory.DefaultDistributionFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/DNADistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/GapDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/IgnoreCountsTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/PairDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistribution.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/SimpleDistributionTrainerContext.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/dist/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchSubHit.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearcher.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchHit.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchResult.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SeqSimilaritySearchSubHit.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchHit.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/SimpleSeqSimilaritySearchResult.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/search/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SimpleSequenceDBInstallation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/SequenceDBInstallation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/AnnotatedSequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/CachingSequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/HashSequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.ByName.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IDMaker.ByURN.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/IndexedSequenceDB.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamWriter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/AlignmentFormat.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FastaDescriptionReader.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FeatureBuilder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/SequenceFormat.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/DefaultDescriptionReader.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/EmblFormat.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/FastaFormat.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/GenbankFormat.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/SimpleFeatureBuilder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamReader.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/StreamReader.Context.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Feature.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureRealizer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/RealizingFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Sequence.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceAnnotator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SequenceIterator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/AbstractFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/DNATools.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/Feature.Template.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.AcceptAllFilter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.And.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.BySource.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.ByType.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.ContainedByLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.Not.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.Or.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureFilter.OverlapsLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/FeatureHolder.EmptyFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/GeneticCode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/MergeFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/ProteinTools.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleFeatureHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleFeatureRealizer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleSequence.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/SimpleSequenceFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.Strand.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/StrandedFeature.Template.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/ViewSequence.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/seq/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IllegalSymbolException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alignment.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AtomicSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/FiniteAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Symbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TranslationTable.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AbstractAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AbstractSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AllTokensAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Alphabet.EmptyAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AlphabetManager.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/AlphabetManager.ListWrapper.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CompoundLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/CrossProductSymbolNameParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/DoubleAlphabet.DoubleSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/FixedWidthParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/GappedSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IntegerAlphabet.IntegerSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.EmptyLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/Location.LocationComparator.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/NameParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/OrderNSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/PointLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/RangeLocation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/ReverseSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAlignment.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleAtomicSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleSymbol.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SimpleTranslationTable.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SingletonAlphabet.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SuffixTree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SuffixTree.SuffixNode.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/SymbolList.EmptySymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TokenParser.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/TranslatedSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/WindowedSymbolList.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/IllegalAlphabetException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/symbol/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/SimpleAnnotation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/BioException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/BioError.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotatable.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/Annotation.EmptyAnnotation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bio/OverlayAnnotation.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SymbolListAdapter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/AnonymousSeqImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/FeatureAdapter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqDBImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/PrimarySeqIteratorImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqDBImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqFeatureIteratorImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SeqImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceAdapter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceDBAdapter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/SequenceIteratorAdapter.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME/UnknownImpl.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/TrainRegression.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.DepthScaler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/ClassifierExample.PointClassifier.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Classify.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.MultipleScalar.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.NullModelScaler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.SelectionScalar.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SuffixTreeKernel.UniformScaler.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/SVM_Light.LabelledVector.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/Train.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ItemValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMClassifierModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMTarget.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingContext.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingListener.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMClassifierModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/AbstractSVMTarget.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/CachingKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalAddKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/DiagonalCachingKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/LinearKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/ListSumKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMOTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NestedKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/NormalizingKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/PolynomialKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/RadialBaseKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SigmoidKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleItemValue.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMClassifierModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SimpleSVMTarget.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SMORegressionTrainer.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SparseVector.NormalizingKernel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/SVMRegressionModel.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/stats/svm/TrainingEvent.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/Contract.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/AssertionFailedException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PostconditionNotMetException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/contract/PreconditionNotMetException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerFactory.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLDispatcher.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/xml/XMLPeerBuilder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ObjectUtil.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/StaticMemberPlaceHolder.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/TypedProperties.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/ParserException.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/org/biojava/utils/package-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/deprecated-list.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/allclasses-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/packages.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-summary.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-frame.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/serialized-form.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/package-list +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/help-doc.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/overview-tree.html +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/stylesheet.css +%%PORTDOCS%%%%DOCSDIR%%-1.01/api/index-all.html @dirrm share/java/biojava-1.01/demos/acedb @dirrm share/java/biojava-1.01/demos/gff @dirrm share/java/biojava-1.01/demos/seq/db @@ -550,36 +550,36 @@ share/java/biojava-1.01/demos/seqviewer/TestSequencePanel.java @dirrm share/java/biojava-1.01/demos/symbol @dirrm share/java/biojava-1.01/demos/seqviewer @dirrm share/java/biojava-1.01/demos -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/GNOME -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/acedb/socket -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/acedb/staticobj -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/acedb/seq -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/acedb -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/Biocorba/Seqcore -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/Biocorba -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/program/gff -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/program -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/dp -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/gui/sequence -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/gui -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/dist -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/search -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/seq/db -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/seq/io -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/seq -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio/symbol -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bio -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba/Seqcore -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bridge/Biocorba -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bridge/GNOME -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/bridge -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/stats/svm/tools -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/stats/svm -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/stats -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/utils/contract -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/utils/xml -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava/utils -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org/biojava -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api/org -%%PORTDOCS%%@dirrm share/doc/biojava-1.01/api -%%PORTDOCS%%@dirrm share/doc/biojava-1.01 +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/GNOME +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/socket +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/staticobj +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb/seq +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/acedb +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba/Seqcore +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/Biocorba +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program/gff +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/program +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dp +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui/sequence +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/gui +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/dist +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/search +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/db +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq/io +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/seq +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio/symbol +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bio +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba/Seqcore +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/Biocorba +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge/GNOME +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/bridge +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm/tools +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats/svm +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/stats +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/contract +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils/xml +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava/utils +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org/biojava +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api/org +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01/api +%%PORTDOCS%%@dirrm %%DOCSDIR%%-1.01 diff --git a/biology/coalesce/pkg-plist b/biology/coalesce/pkg-plist index 4f63eb5abe2d..3d66316d6716 100644 --- a/biology/coalesce/pkg-plist +++ b/biology/coalesce/pkg-plist @@ -1,4 +1,4 @@ bin/coalesce -%%PORTDOCS%%share/doc/coalesce/coalesce.doc -%%PORTDOCS%%share/doc/coalesce/errors.doc -%%PORTDOCS%%@dirrm share/doc/coalesce +%%PORTDOCS%%%%DOCSDIR%%/coalesce.doc +%%PORTDOCS%%%%DOCSDIR%%/errors.doc +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/crimap/pkg-plist b/biology/crimap/pkg-plist index cd57f6bcc5ff..11af7430c94b 100644 --- a/biology/crimap/pkg-plist +++ b/biology/crimap/pkg-plist @@ -1,6 +1,6 @@ bin/crimap -%%PORTDOCS%%share/doc/crimap/progdoc_v2.4 +%%PORTDOCS%%%%DOCSDIR%%/progdoc_v2.4 %%PORTDOCS%%share/examples/crimap/chr7a.gen %%PORTDOCS%%share/examples/crimap/demo.dat -%%PORTDOCS%%@dirrm share/doc/crimap +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm share/examples/crimap diff --git a/biology/dna-qc/pkg-plist b/biology/dna-qc/pkg-plist index 09192275d6fa..b9e9afbcf6b3 100644 --- a/biology/dna-qc/pkg-plist +++ b/biology/dna-qc/pkg-plist @@ -3,17 +3,17 @@ bin/hybridize bin/normalize bin/random_clip bin/random_line -%%PORTDOCS%%share/doc/dna-qc/qc_algorithm.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig1.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig2a.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig2b.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig2c.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig3.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig4.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig5.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig6.ps.Z -%%PORTDOCS%%share/doc/dna-qc/qc_fig7.ps.Z -%%PORTDOCS%%share/doc/dna-qc/surprize.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_algorithm.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig1.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig2a.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig2b.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig2c.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig3.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig4.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig5.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig6.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/qc_fig7.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/surprize.ps.Z %%PORTDOCS%%share/examples/dna-qc/README %%PORTDOCS%%share/examples/dna-qc/bact.all %%PORTDOCS%%share/examples/dna-qc/chromosomeIII.all @@ -22,4 +22,4 @@ bin/random_line %%PORTDOCS%%share/examples/dna-qc/script.limits %%PORTDOCS%%share/examples/dna-qc/worm.all %%PORTDOCS%%@dirrm share/examples/dna-qc -%%PORTDOCS%%@dirrm share/doc/dna-qc +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/fasta/pkg-plist b/biology/fasta/pkg-plist index 7b65ef9c827a..9f36d21c1b9d 100644 --- a/biology/fasta/pkg-plist +++ b/biology/fasta/pkg-plist @@ -1,15 +1,15 @@ -%%PORTDOCS%%share/doc/fasta/COPYRIGHT -%%PORTDOCS%%share/doc/fasta/README.versions -%%PORTDOCS%%share/doc/fasta/fasta20.doc -%%PORTDOCS%%share/doc/fasta/fasta20.me -%%PORTDOCS%%share/doc/fasta/format.doc -%%PORTDOCS%%share/doc/fasta/readme.v15 -%%PORTDOCS%%share/doc/fasta/readme.v16 -%%PORTDOCS%%share/doc/fasta/readme.v17 -%%PORTDOCS%%share/doc/fasta/readme.v20 -%%PORTDOCS%%share/doc/fasta/readme.v20u4 -%%PORTDOCS%%share/doc/fasta/readme.v20u5 -%%PORTDOCS%%share/doc/fasta/readme.v20u6 +%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT +%%PORTDOCS%%%%DOCSDIR%%/README.versions +%%PORTDOCS%%%%DOCSDIR%%/fasta20.doc +%%PORTDOCS%%%%DOCSDIR%%/fasta20.me +%%PORTDOCS%%%%DOCSDIR%%/format.doc +%%PORTDOCS%%%%DOCSDIR%%/readme.v15 +%%PORTDOCS%%%%DOCSDIR%%/readme.v16 +%%PORTDOCS%%%%DOCSDIR%%/readme.v17 +%%PORTDOCS%%%%DOCSDIR%%/readme.v20 +%%PORTDOCS%%%%DOCSDIR%%/readme.v20u4 +%%PORTDOCS%%%%DOCSDIR%%/readme.v20u5 +%%PORTDOCS%%%%DOCSDIR%%/readme.v20u6 bin/aacomp bin/align bin/align0 @@ -35,4 +35,4 @@ bin/tfasta bin/tfastx bin/tgrease bin/zs_exp -%%PORTDOCS%%@dirrm share/doc/fasta +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/fasta3/pkg-plist b/biology/fasta3/pkg-plist index a73cd6e197a8..6e00e86ccfef 100644 --- a/biology/fasta3/pkg-plist +++ b/biology/fasta3/pkg-plist @@ -1,22 +1,22 @@ -%%PORTDOCS%%share/doc/fasta3/00README.1st -%%PORTDOCS%%share/doc/fasta3/COPYRIGHT -%%PORTDOCS%%share/doc/fasta3/README -%%PORTDOCS%%share/doc/fasta3/fasta3x.doc -%%PORTDOCS%%share/doc/fasta3/fasta3x.me -%%PORTDOCS%%share/doc/fasta3/readme.mpi_3.3 -%%PORTDOCS%%share/doc/fasta3/readme.pvm_2.0 -%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.0 -%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.2 -%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.3 -%%PORTDOCS%%share/doc/fasta3/readme.pvm_3.4 -%%PORTDOCS%%share/doc/fasta3/readme.v30 -%%PORTDOCS%%share/doc/fasta3/readme.v30t6 -%%PORTDOCS%%share/doc/fasta3/readme.v30t7 -%%PORTDOCS%%share/doc/fasta3/readme.v31t0 -%%PORTDOCS%%share/doc/fasta3/readme.v31t1 -%%PORTDOCS%%share/doc/fasta3/readme.v32t0 -%%PORTDOCS%%share/doc/fasta3/readme.v33t0 -%%PORTDOCS%%share/doc/fasta3/readme.w32 +%%PORTDOCS%%%%DOCSDIR%%/00README.1st +%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/fasta3x.doc +%%PORTDOCS%%%%DOCSDIR%%/fasta3x.me +%%PORTDOCS%%%%DOCSDIR%%/readme.mpi_3.3 +%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_2.0 +%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.0 +%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.2 +%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.3 +%%PORTDOCS%%%%DOCSDIR%%/readme.pvm_3.4 +%%PORTDOCS%%%%DOCSDIR%%/readme.v30 +%%PORTDOCS%%%%DOCSDIR%%/readme.v30t6 +%%PORTDOCS%%%%DOCSDIR%%/readme.v30t7 +%%PORTDOCS%%%%DOCSDIR%%/readme.v31t0 +%%PORTDOCS%%%%DOCSDIR%%/readme.v31t1 +%%PORTDOCS%%%%DOCSDIR%%/readme.v32t0 +%%PORTDOCS%%%%DOCSDIR%%/readme.v33t0 +%%PORTDOCS%%%%DOCSDIR%%/readme.w32 bin/fasta3 bin/fasta3_t bin/fastf3 @@ -42,4 +42,4 @@ bin/tfastx3_t bin/tfasty3 bin/tfasty3_t etc/fastlibs.sample -%%PORTDOCS%%@dirrm share/doc/fasta3 +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/fastdnaml/pkg-plist b/biology/fastdnaml/pkg-plist index cc19e20c3922..6fb7853d1ed0 100644 --- a/biology/fastdnaml/pkg-plist +++ b/biology/fastdnaml/pkg-plist @@ -32,7 +32,7 @@ bin/fastdnaml/usertree bin/fastdnaml/usertrees bin/fastdnaml/weights bin/fastdnaml/weights_categories -%%PORTDOCS%%share/doc/fastdnaml/fastDNAml_doc_1.2.txt -%%PORTDOCS%%share/doc/fastdnaml/fastDNAml_scripts.txt +%%PORTDOCS%%%%DOCSDIR%%/fastDNAml_doc_1.2.txt +%%PORTDOCS%%%%DOCSDIR%%/fastDNAml_scripts.txt @dirrm bin/fastdnaml -%%PORTDOCS%%@dirrm share/doc/fastdnaml +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/fluctuate/pkg-plist b/biology/fluctuate/pkg-plist index 6aed79770140..2adc88acb913 100644 --- a/biology/fluctuate/pkg-plist +++ b/biology/fluctuate/pkg-plist @@ -1,4 +1,4 @@ bin/fluctuate -%%PORTDOCS%%share/doc/fluctuate/errors.doc -%%PORTDOCS%%share/doc/fluctuate/fluctuate.doc -%%PORTDOCS%%@dirrm share/doc/fluctuate +%%PORTDOCS%%%%DOCSDIR%%/errors.doc +%%PORTDOCS%%%%DOCSDIR%%/fluctuate.doc +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/garlic/pkg-plist b/biology/garlic/pkg-plist index 6bb84f75df6b..ba1555bf8560 100644 --- a/biology/garlic/pkg-plist +++ b/biology/garlic/pkg-plist @@ -2,274 +2,274 @@ bin/garlic share/garlic/.garlicrc share/garlic/residues.pdb @dirrm share/garlic -%%PORTDOCS%%share/doc/garlic/data/favicon.ico -%%PORTDOCS%%share/doc/garlic/data/index.html -%%PORTDOCS%%share/doc/garlic/data/garlic.gif -%%PORTDOCS%%share/doc/garlic/favicon.ico -%%PORTDOCS%%share/doc/garlic/refcard/favicon.ico -%%PORTDOCS%%share/doc/garlic/refcard/index.html -%%PORTDOCS%%share/doc/garlic/refcard/garlic.gif -%%PORTDOCS%%share/doc/garlic/refcard/refcard.html -%%PORTDOCS%%share/doc/garlic/techinfo/favicon.ico -%%PORTDOCS%%share/doc/garlic/techinfo/index.html -%%PORTDOCS%%share/doc/garlic/techinfo/garlic.gif -%%PORTDOCS%%share/doc/garlic/mouse/favicon.ico -%%PORTDOCS%%share/doc/garlic/mouse/neighbor.gif -%%PORTDOCS%%share/doc/garlic/mouse/outplot.gif -%%PORTDOCS%%share/doc/garlic/mouse/index.html -%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outplot.gif -%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outstr.gif -%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outcomp.gif -%%PORTDOCS%%share/doc/garlic/mouse/.xvpics/outrama.gif -%%PORTDOCS%%share/doc/garlic/mouse/outstr.gif -%%PORTDOCS%%share/doc/garlic/mouse/outcomp.gif -%%PORTDOCS%%share/doc/garlic/mouse/outrama.gif -%%PORTDOCS%%share/doc/garlic/mouse/garlic.gif -%%PORTDOCS%%share/doc/garlic/README -%%PORTDOCS%%share/doc/garlic/download/favicon.ico -%%PORTDOCS%%share/doc/garlic/download/index.html -%%PORTDOCS%%share/doc/garlic/download/garlic.gif -%%PORTDOCS%%share/doc/garlic/scripts/favicon.ico -%%PORTDOCS%%share/doc/garlic/scripts/colors.script -%%PORTDOCS%%share/doc/garlic/scripts/atoms.script -%%PORTDOCS%%share/doc/garlic/scripts/probes.script -%%PORTDOCS%%share/doc/garlic/scripts/bonds.script -%%PORTDOCS%%share/doc/garlic/scripts/garlic.gif -%%PORTDOCS%%share/doc/garlic/license/favicon.ico -%%PORTDOCS%%share/doc/garlic/license/index.html -%%PORTDOCS%%share/doc/garlic/license/garlic.gif -%%PORTDOCS%%share/doc/garlic/docs.html -%%PORTDOCS%%share/doc/garlic/index.html -%%PORTDOCS%%share/doc/garlic/bold_statement.html -%%PORTDOCS%%share/doc/garlic/gallery/favicon.ico -%%PORTDOCS%%share/doc/garlic/gallery/index.html -%%PORTDOCS%%share/doc/garlic/gallery/small1.png -%%PORTDOCS%%share/doc/garlic/gallery/small2.png -%%PORTDOCS%%share/doc/garlic/gallery/small3.png -%%PORTDOCS%%share/doc/garlic/gallery/small4.png -%%PORTDOCS%%share/doc/garlic/gallery/small5.png -%%PORTDOCS%%share/doc/garlic/gallery/small6.png -%%PORTDOCS%%share/doc/garlic/gallery/small7.png -%%PORTDOCS%%share/doc/garlic/gallery/small8.png -%%PORTDOCS%%share/doc/garlic/gallery/small9.png -%%PORTDOCS%%share/doc/garlic/gallery/small10.png -%%PORTDOCS%%share/doc/garlic/gallery/small11.png -%%PORTDOCS%%share/doc/garlic/gallery/small12.png -%%PORTDOCS%%share/doc/garlic/gallery/garlic.gif -%%PORTDOCS%%share/doc/garlic/config/favicon.ico -%%PORTDOCS%%share/doc/garlic/config/.garlicrc -%%PORTDOCS%%share/doc/garlic/config/index.html -%%PORTDOCS%%share/doc/garlic/config/garlic.gif -%%PORTDOCS%%share/doc/garlic/support/favicon.ico -%%PORTDOCS%%share/doc/garlic/support/index.html -%%PORTDOCS%%share/doc/garlic/support/garlic.gif -%%PORTDOCS%%share/doc/garlic/commands/fad.html -%%PORTDOCS%%share/doc/garlic/commands/rep.html -%%PORTDOCS%%share/doc/garlic/commands/favicon.ico -%%PORTDOCS%%share/doc/garlic/commands/sho.html -%%PORTDOCS%%share/doc/garlic/commands/aacodes.gif -%%PORTDOCS%%share/doc/garlic/commands/pro_hint.gif -%%PORTDOCS%%share/doc/garlic/commands/res.html -%%PORTDOCS%%share/doc/garlic/commands/balls_and_sticks.gif -%%PORTDOCS%%share/doc/garlic/commands/neighbor.gif -%%PORTDOCS%%share/doc/garlic/commands/ref_off.gif -%%PORTDOCS%%share/doc/garlic/commands/eis_oct.gif -%%PORTDOCS%%share/doc/garlic/commands/sav.html -%%PORTDOCS%%share/doc/garlic/commands/sca.html -%%PORTDOCS%%share/doc/garlic/commands/plot1.gif -%%PORTDOCS%%share/doc/garlic/commands/plot2.gif -%%PORTDOCS%%share/doc/garlic/commands/plot3.gif -%%PORTDOCS%%share/doc/garlic/commands/wheel.gif -%%PORTDOCS%%share/doc/garlic/commands/dock1.jpg -%%PORTDOCS%%share/doc/garlic/commands/dock2.jpg -%%PORTDOCS%%share/doc/garlic/commands/fon.html -%%PORTDOCS%%share/doc/garlic/commands/dis.html -%%PORTDOCS%%share/doc/garlic/commands/seahorse.gif -%%PORTDOCS%%share/doc/garlic/commands/dihedrals.html -%%PORTDOCS%%share/doc/garlic/commands/gro.html -%%PORTDOCS%%share/doc/garlic/commands/tfg.html -%%PORTDOCS%%share/doc/garlic/commands/small_probe.gif -%%PORTDOCS%%share/doc/garlic/commands/rad.html -%%PORTDOCS%%share/doc/garlic/commands/plane1.jpg -%%PORTDOCS%%share/doc/garlic/commands/plane2.jpg -%%PORTDOCS%%share/doc/garlic/commands/plane3.jpg -%%PORTDOCS%%share/doc/garlic/commands/whe.html -%%PORTDOCS%%share/doc/garlic/commands/pat.html -%%PORTDOCS%%share/doc/garlic/commands/pau.html -%%PORTDOCS%%share/doc/garlic/commands/pos.html -%%PORTDOCS%%share/doc/garlic/commands/kd_oct.gif -%%PORTDOCS%%share/doc/garlic/commands/generic_hint.gif -%%PORTDOCS%%share/doc/garlic/commands/index.html -%%PORTDOCS%%share/doc/garlic/commands/phipsi.gif -%%PORTDOCS%%share/doc/garlic/commands/mon.html -%%PORTDOCS%%share/doc/garlic/commands/col.html -%%PORTDOCS%%share/doc/garlic/commands/hid.html -%%PORTDOCS%%share/doc/garlic/commands/com.html -%%PORTDOCS%%share/doc/garlic/commands/ven.html -%%PORTDOCS%%share/doc/garlic/commands/atoms.gif -%%PORTDOCS%%share/doc/garlic/commands/ram.html -%%PORTDOCS%%share/doc/garlic/commands/chi_angles.gif -%%PORTDOCS%%share/doc/garlic/commands/str.gif -%%PORTDOCS%%share/doc/garlic/commands/sla.html -%%PORTDOCS%%share/doc/garlic/commands/cat.html -%%PORTDOCS%%share/doc/garlic/commands/nei.html -%%PORTDOCS%%share/doc/garlic/commands/blu.html -%%PORTDOCS%%share/doc/garlic/commands/venn.gif -%%PORTDOCS%%share/doc/garlic/commands/add.html -%%PORTDOCS%%share/doc/garlic/commands/mov.html -%%PORTDOCS%%share/doc/garlic/commands/residues.html -%%PORTDOCS%%share/doc/garlic/commands/ssb.html -%%PORTDOCS%%share/doc/garlic/commands/probes.gif -%%PORTDOCS%%share/doc/garlic/commands/id.gif -%%PORTDOCS%%share/doc/garlic/commands/ramacont.gif -%%PORTDOCS%%share/doc/garlic/commands/tag.html -%%PORTDOCS%%share/doc/garlic/commands/insert -%%PORTDOCS%%share/doc/garlic/commands/stefin1.jpg -%%PORTDOCS%%share/doc/garlic/commands/stefin2.jpg -%%PORTDOCS%%share/doc/garlic/commands/rot.html -%%PORTDOCS%%share/doc/garlic/commands/omega_hint.gif -%%PORTDOCS%%share/doc/garlic/commands/win.html -%%PORTDOCS%%share/doc/garlic/commands/sel.html -%%PORTDOCS%%share/doc/garlic/commands/lab.html -%%PORTDOCS%%share/doc/garlic/commands/dummy_atoms.html -%%PORTDOCS%%share/doc/garlic/commands/loa.html -%%PORTDOCS%%share/doc/garlic/commands/substmat.gif -%%PORTDOCS%%share/doc/garlic/commands/bonds.gif -%%PORTDOCS%%share/doc/garlic/commands/bg.html -%%PORTDOCS%%share/doc/garlic/commands/bac.html -%%PORTDOCS%%share/doc/garlic/commands/seq.html -%%PORTDOCS%%share/doc/garlic/commands/patterns.gif -%%PORTDOCS%%share/doc/garlic/commands/pla.html -%%PORTDOCS%%share/doc/garlic/commands/colors.png -%%PORTDOCS%%share/doc/garlic/commands/ste.html -%%PORTDOCS%%share/doc/garlic/commands/tbg.html -%%PORTDOCS%%share/doc/garlic/commands/log.html -%%PORTDOCS%%share/doc/garlic/commands/set.html -%%PORTDOCS%%share/doc/garlic/commands/hyb.html -%%PORTDOCS%%share/doc/garlic/commands/legend.gif -%%PORTDOCS%%share/doc/garlic/commands/pro.html -%%PORTDOCS%%share/doc/garlic/commands/sti.html -%%PORTDOCS%%share/doc/garlic/commands/cre.html -%%PORTDOCS%%share/doc/garlic/commands/bal.html -%%PORTDOCS%%share/doc/garlic/commands/squid.gif -%%PORTDOCS%%share/doc/garlic/commands/exe.html -%%PORTDOCS%%share/doc/garlic/commands/bon.html -%%PORTDOCS%%share/doc/garlic/commands/garlic.gif -%%PORTDOCS%%share/doc/garlic/commands/plot_eq1.gif -%%PORTDOCS%%share/doc/garlic/commands/plot_eq2.gif -%%PORTDOCS%%share/doc/garlic/commands/ign.html -%%PORTDOCS%%share/doc/garlic/commands/plo.html -%%PORTDOCS%%share/doc/garlic/commands/str.html -%%PORTDOCS%%share/doc/garlic/commands/exi.html -%%PORTDOCS%%share/doc/garlic/commands/doc.html -%%PORTDOCS%%share/doc/garlic/commands/tit.html -%%PORTDOCS%%share/doc/garlic/commands/schemes.jpg -%%PORTDOCS%%share/doc/garlic/commands/papain1.jpg -%%PORTDOCS%%share/doc/garlic/commands/papain2.jpg -%%PORTDOCS%%share/doc/garlic/commands/gly_hint.gif -%%PORTDOCS%%share/doc/garlic/commands/large_probe.gif -%%PORTDOCS%%share/doc/garlic/commands/ref.html -%%PORTDOCS%%share/doc/garlic/commands/mem.html -%%PORTDOCS%%share/doc/garlic/commands/reg.html -%%PORTDOCS%%share/doc/garlic/commands/prepro_hint.gif -%%PORTDOCS%%share/doc/garlic/commands/tra.html -%%PORTDOCS%%share/doc/garlic/commands/edi.html -%%PORTDOCS%%share/doc/garlic/commands/cen.html -%%PORTDOCS%%share/doc/garlic/commands/ato.html -%%PORTDOCS%%share/doc/garlic/commands/ramaplot.gif -%%PORTDOCS%%share/doc/garlic/commands/kd_eis.gif -%%PORTDOCS%%share/doc/garlic/commands/blur1.gif -%%PORTDOCS%%share/doc/garlic/commands/blur2.gif -%%PORTDOCS%%share/doc/garlic/commands/blur3.gif -%%PORTDOCS%%share/doc/garlic/commands/ang.html -%%PORTDOCS%%share/doc/garlic/commands/blur4.gif -%%PORTDOCS%%share/doc/garlic/commands/blur5.gif -%%PORTDOCS%%share/doc/garlic/commands/blur6.gif -%%PORTDOCS%%share/doc/garlic/commands/fg.html -%%PORTDOCS%%share/doc/garlic/commands/blur7.gif -%%PORTDOCS%%share/doc/garlic/commands/blur8.gif -%%PORTDOCS%%share/doc/garlic/monster.gif -%%PORTDOCS%%share/doc/garlic/controls/favicon.ico -%%PORTDOCS%%share/doc/garlic/controls/funkeys.jpg -%%PORTDOCS%%share/doc/garlic/controls/term.gif -%%PORTDOCS%%share/doc/garlic/controls/index.html -%%PORTDOCS%%share/doc/garlic/controls/numkeys.jpg -%%PORTDOCS%%share/doc/garlic/controls/pc.gif -%%PORTDOCS%%share/doc/garlic/controls/garlic.gif -%%PORTDOCS%%share/doc/garlic/controls/modkeys.jpg -%%PORTDOCS%%share/doc/garlic/cookbook/index.html -%%PORTDOCS%%share/doc/garlic/cookbook/garlic_recipe1.html -%%PORTDOCS%%share/doc/garlic/cookbook/garlic.gif -%%PORTDOCS%%share/doc/garlic/future-docs.html -%%PORTDOCS%%share/doc/garlic/features/favicon.ico -%%PORTDOCS%%share/doc/garlic/features/index.html -%%PORTDOCS%%share/doc/garlic/features/garlic.gif -%%PORTDOCS%%share/doc/garlic/bugfixes/favicon.ico -%%PORTDOCS%%share/doc/garlic/bugfixes/index.html -%%PORTDOCS%%share/doc/garlic/bugfixes/garlic.gif -%%PORTDOCS%%share/doc/garlic/tutorial/favicon.ico -%%PORTDOCS%%share/doc/garlic/tutorial/lesson10.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson11.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson12.html -%%PORTDOCS%%share/doc/garlic/tutorial/index.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson1.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson2.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson3.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson4.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson5.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson6.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson7.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson8.html -%%PORTDOCS%%share/doc/garlic/tutorial/lesson9.html -%%PORTDOCS%%share/doc/garlic/tutorial/script1.html -%%PORTDOCS%%share/doc/garlic/tutorial/script2.html -%%PORTDOCS%%share/doc/garlic/tutorial/script3.html -%%PORTDOCS%%share/doc/garlic/tutorial/script4.html -%%PORTDOCS%%share/doc/garlic/tutorial/garlic.gif -%%PORTDOCS%%share/doc/garlic/tutorial/window.gif -%%PORTDOCS%%share/doc/garlic/whatis/favicon.ico -%%PORTDOCS%%share/doc/garlic/whatis/index.html -%%PORTDOCS%%share/doc/garlic/whatis/garlic.gif -%%PORTDOCS%%share/doc/garlic/competition/index.html -%%PORTDOCS%%share/doc/garlic/competition/garlic.gif -%%PORTDOCS%%share/doc/garlic/versions.html -%%PORTDOCS%%share/doc/garlic/options/favicon.ico -%%PORTDOCS%%share/doc/garlic/options/index.html -%%PORTDOCS%%share/doc/garlic/options/garlic.gif -%%PORTDOCS%%share/doc/garlic/garlic.gif -%%PORTDOCS%%share/doc/garlic/install/favicon.ico -%%PORTDOCS%%share/doc/garlic/install/macosx.html -%%PORTDOCS%%share/doc/garlic/install/index.html -%%PORTDOCS%%share/doc/garlic/install/octane.html -%%PORTDOCS%%share/doc/garlic/install/mol_path.html -%%PORTDOCS%%share/doc/garlic/install/garlic.gif -%%PORTDOCS%%share/doc/garlic/install/rs6000.html -%%PORTDOCS%%share/doc/garlic/changes/favicon.ico -%%PORTDOCS%%share/doc/garlic/changes/index.html -%%PORTDOCS%%share/doc/garlic/changes/garlic.gif -%%PORTDOCS%%@dirrm share/doc/garlic/whatis -%%PORTDOCS%%@dirrm share/doc/garlic/tutorial -%%PORTDOCS%%@dirrm share/doc/garlic/techinfo -%%PORTDOCS%%@dirrm share/doc/garlic/support -%%PORTDOCS%%@dirrm share/doc/garlic/scripts -%%PORTDOCS%%@dirrm share/doc/garlic/refcard -%%PORTDOCS%%@dirrm share/doc/garlic/options -%%PORTDOCS%%@dirrm share/doc/garlic/mouse/.xvpics -%%PORTDOCS%%@dirrm share/doc/garlic/mouse -%%PORTDOCS%%@dirrm share/doc/garlic/license -%%PORTDOCS%%@dirrm share/doc/garlic/install -%%PORTDOCS%%@dirrm share/doc/garlic/gallery -%%PORTDOCS%%@dirrm share/doc/garlic/features -%%PORTDOCS%%@dirrm share/doc/garlic/download -%%PORTDOCS%%@dirrm share/doc/garlic/data -%%PORTDOCS%%@dirrm share/doc/garlic/cookbook -%%PORTDOCS%%@dirrm share/doc/garlic/controls -%%PORTDOCS%%@dirrm share/doc/garlic/config -%%PORTDOCS%%@dirrm share/doc/garlic/competition -%%PORTDOCS%%@dirrm share/doc/garlic/commands -%%PORTDOCS%%@dirrm share/doc/garlic/changes -%%PORTDOCS%%@dirrm share/doc/garlic/bugfixes -%%PORTDOCS%%@dirrm share/doc/garlic +%%PORTDOCS%%%%DOCSDIR%%/data/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/data/index.html +%%PORTDOCS%%%%DOCSDIR%%/data/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/refcard/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/refcard/index.html +%%PORTDOCS%%%%DOCSDIR%%/refcard/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/refcard/refcard.html +%%PORTDOCS%%%%DOCSDIR%%/techinfo/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/techinfo/index.html +%%PORTDOCS%%%%DOCSDIR%%/techinfo/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/mouse/neighbor.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/outplot.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/index.html +%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outplot.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outstr.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outcomp.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/.xvpics/outrama.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/outstr.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/outcomp.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/outrama.gif +%%PORTDOCS%%%%DOCSDIR%%/mouse/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/download/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/download/index.html +%%PORTDOCS%%%%DOCSDIR%%/download/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/scripts/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/scripts/colors.script +%%PORTDOCS%%%%DOCSDIR%%/scripts/atoms.script +%%PORTDOCS%%%%DOCSDIR%%/scripts/probes.script +%%PORTDOCS%%%%DOCSDIR%%/scripts/bonds.script +%%PORTDOCS%%%%DOCSDIR%%/scripts/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/license/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/license/index.html +%%PORTDOCS%%%%DOCSDIR%%/license/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/docs.html +%%PORTDOCS%%%%DOCSDIR%%/index.html +%%PORTDOCS%%%%DOCSDIR%%/bold_statement.html +%%PORTDOCS%%%%DOCSDIR%%/gallery/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/gallery/index.html +%%PORTDOCS%%%%DOCSDIR%%/gallery/small1.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small2.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small3.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small4.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small5.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small6.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small7.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small8.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small9.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small10.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small11.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/small12.png +%%PORTDOCS%%%%DOCSDIR%%/gallery/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/config/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/config/.garlicrc +%%PORTDOCS%%%%DOCSDIR%%/config/index.html +%%PORTDOCS%%%%DOCSDIR%%/config/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/support/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/support/index.html +%%PORTDOCS%%%%DOCSDIR%%/support/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/fad.html +%%PORTDOCS%%%%DOCSDIR%%/commands/rep.html +%%PORTDOCS%%%%DOCSDIR%%/commands/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/commands/sho.html +%%PORTDOCS%%%%DOCSDIR%%/commands/aacodes.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/pro_hint.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/res.html +%%PORTDOCS%%%%DOCSDIR%%/commands/balls_and_sticks.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/neighbor.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ref_off.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/eis_oct.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/sav.html +%%PORTDOCS%%%%DOCSDIR%%/commands/sca.html +%%PORTDOCS%%%%DOCSDIR%%/commands/plot1.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/plot2.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/plot3.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/wheel.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/dock1.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/dock2.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/fon.html +%%PORTDOCS%%%%DOCSDIR%%/commands/dis.html +%%PORTDOCS%%%%DOCSDIR%%/commands/seahorse.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/dihedrals.html +%%PORTDOCS%%%%DOCSDIR%%/commands/gro.html +%%PORTDOCS%%%%DOCSDIR%%/commands/tfg.html +%%PORTDOCS%%%%DOCSDIR%%/commands/small_probe.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/rad.html +%%PORTDOCS%%%%DOCSDIR%%/commands/plane1.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/plane2.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/plane3.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/whe.html +%%PORTDOCS%%%%DOCSDIR%%/commands/pat.html +%%PORTDOCS%%%%DOCSDIR%%/commands/pau.html +%%PORTDOCS%%%%DOCSDIR%%/commands/pos.html +%%PORTDOCS%%%%DOCSDIR%%/commands/kd_oct.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/generic_hint.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/index.html +%%PORTDOCS%%%%DOCSDIR%%/commands/phipsi.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/mon.html +%%PORTDOCS%%%%DOCSDIR%%/commands/col.html +%%PORTDOCS%%%%DOCSDIR%%/commands/hid.html +%%PORTDOCS%%%%DOCSDIR%%/commands/com.html +%%PORTDOCS%%%%DOCSDIR%%/commands/ven.html +%%PORTDOCS%%%%DOCSDIR%%/commands/atoms.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ram.html +%%PORTDOCS%%%%DOCSDIR%%/commands/chi_angles.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/str.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/sla.html +%%PORTDOCS%%%%DOCSDIR%%/commands/cat.html +%%PORTDOCS%%%%DOCSDIR%%/commands/nei.html +%%PORTDOCS%%%%DOCSDIR%%/commands/blu.html +%%PORTDOCS%%%%DOCSDIR%%/commands/venn.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/add.html +%%PORTDOCS%%%%DOCSDIR%%/commands/mov.html +%%PORTDOCS%%%%DOCSDIR%%/commands/residues.html +%%PORTDOCS%%%%DOCSDIR%%/commands/ssb.html +%%PORTDOCS%%%%DOCSDIR%%/commands/probes.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/id.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ramacont.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/tag.html +%%PORTDOCS%%%%DOCSDIR%%/commands/insert +%%PORTDOCS%%%%DOCSDIR%%/commands/stefin1.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/stefin2.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/rot.html +%%PORTDOCS%%%%DOCSDIR%%/commands/omega_hint.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/win.html +%%PORTDOCS%%%%DOCSDIR%%/commands/sel.html +%%PORTDOCS%%%%DOCSDIR%%/commands/lab.html +%%PORTDOCS%%%%DOCSDIR%%/commands/dummy_atoms.html +%%PORTDOCS%%%%DOCSDIR%%/commands/loa.html +%%PORTDOCS%%%%DOCSDIR%%/commands/substmat.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/bonds.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/bg.html +%%PORTDOCS%%%%DOCSDIR%%/commands/bac.html +%%PORTDOCS%%%%DOCSDIR%%/commands/seq.html +%%PORTDOCS%%%%DOCSDIR%%/commands/patterns.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/pla.html +%%PORTDOCS%%%%DOCSDIR%%/commands/colors.png +%%PORTDOCS%%%%DOCSDIR%%/commands/ste.html +%%PORTDOCS%%%%DOCSDIR%%/commands/tbg.html +%%PORTDOCS%%%%DOCSDIR%%/commands/log.html +%%PORTDOCS%%%%DOCSDIR%%/commands/set.html +%%PORTDOCS%%%%DOCSDIR%%/commands/hyb.html +%%PORTDOCS%%%%DOCSDIR%%/commands/legend.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/pro.html +%%PORTDOCS%%%%DOCSDIR%%/commands/sti.html +%%PORTDOCS%%%%DOCSDIR%%/commands/cre.html +%%PORTDOCS%%%%DOCSDIR%%/commands/bal.html +%%PORTDOCS%%%%DOCSDIR%%/commands/squid.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/exe.html +%%PORTDOCS%%%%DOCSDIR%%/commands/bon.html +%%PORTDOCS%%%%DOCSDIR%%/commands/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/plot_eq1.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/plot_eq2.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ign.html +%%PORTDOCS%%%%DOCSDIR%%/commands/plo.html +%%PORTDOCS%%%%DOCSDIR%%/commands/str.html +%%PORTDOCS%%%%DOCSDIR%%/commands/exi.html +%%PORTDOCS%%%%DOCSDIR%%/commands/doc.html +%%PORTDOCS%%%%DOCSDIR%%/commands/tit.html +%%PORTDOCS%%%%DOCSDIR%%/commands/schemes.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/papain1.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/papain2.jpg +%%PORTDOCS%%%%DOCSDIR%%/commands/gly_hint.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/large_probe.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ref.html +%%PORTDOCS%%%%DOCSDIR%%/commands/mem.html +%%PORTDOCS%%%%DOCSDIR%%/commands/reg.html +%%PORTDOCS%%%%DOCSDIR%%/commands/prepro_hint.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/tra.html +%%PORTDOCS%%%%DOCSDIR%%/commands/edi.html +%%PORTDOCS%%%%DOCSDIR%%/commands/cen.html +%%PORTDOCS%%%%DOCSDIR%%/commands/ato.html +%%PORTDOCS%%%%DOCSDIR%%/commands/ramaplot.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/kd_eis.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur1.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur2.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur3.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/ang.html +%%PORTDOCS%%%%DOCSDIR%%/commands/blur4.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur5.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur6.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/fg.html +%%PORTDOCS%%%%DOCSDIR%%/commands/blur7.gif +%%PORTDOCS%%%%DOCSDIR%%/commands/blur8.gif +%%PORTDOCS%%%%DOCSDIR%%/monster.gif +%%PORTDOCS%%%%DOCSDIR%%/controls/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/controls/funkeys.jpg +%%PORTDOCS%%%%DOCSDIR%%/controls/term.gif +%%PORTDOCS%%%%DOCSDIR%%/controls/index.html +%%PORTDOCS%%%%DOCSDIR%%/controls/numkeys.jpg +%%PORTDOCS%%%%DOCSDIR%%/controls/pc.gif +%%PORTDOCS%%%%DOCSDIR%%/controls/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/controls/modkeys.jpg +%%PORTDOCS%%%%DOCSDIR%%/cookbook/index.html +%%PORTDOCS%%%%DOCSDIR%%/cookbook/garlic_recipe1.html +%%PORTDOCS%%%%DOCSDIR%%/cookbook/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/future-docs.html +%%PORTDOCS%%%%DOCSDIR%%/features/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/features/index.html +%%PORTDOCS%%%%DOCSDIR%%/features/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/bugfixes/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/bugfixes/index.html +%%PORTDOCS%%%%DOCSDIR%%/bugfixes/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/tutorial/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson10.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson11.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson12.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/index.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson1.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson2.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson3.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson4.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson5.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson6.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson7.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson8.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/lesson9.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/script1.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/script2.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/script3.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/script4.html +%%PORTDOCS%%%%DOCSDIR%%/tutorial/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/tutorial/window.gif +%%PORTDOCS%%%%DOCSDIR%%/whatis/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/whatis/index.html +%%PORTDOCS%%%%DOCSDIR%%/whatis/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/competition/index.html +%%PORTDOCS%%%%DOCSDIR%%/competition/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/versions.html +%%PORTDOCS%%%%DOCSDIR%%/options/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/options/index.html +%%PORTDOCS%%%%DOCSDIR%%/options/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/install/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/install/macosx.html +%%PORTDOCS%%%%DOCSDIR%%/install/index.html +%%PORTDOCS%%%%DOCSDIR%%/install/octane.html +%%PORTDOCS%%%%DOCSDIR%%/install/mol_path.html +%%PORTDOCS%%%%DOCSDIR%%/install/garlic.gif +%%PORTDOCS%%%%DOCSDIR%%/install/rs6000.html +%%PORTDOCS%%%%DOCSDIR%%/changes/favicon.ico +%%PORTDOCS%%%%DOCSDIR%%/changes/index.html +%%PORTDOCS%%%%DOCSDIR%%/changes/garlic.gif +%%PORTDOCS%%@dirrm %%DOCSDIR%%/whatis +%%PORTDOCS%%@dirrm %%DOCSDIR%%/tutorial +%%PORTDOCS%%@dirrm %%DOCSDIR%%/techinfo +%%PORTDOCS%%@dirrm %%DOCSDIR%%/support +%%PORTDOCS%%@dirrm %%DOCSDIR%%/scripts +%%PORTDOCS%%@dirrm %%DOCSDIR%%/refcard +%%PORTDOCS%%@dirrm %%DOCSDIR%%/options +%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse/.xvpics +%%PORTDOCS%%@dirrm %%DOCSDIR%%/mouse +%%PORTDOCS%%@dirrm %%DOCSDIR%%/license +%%PORTDOCS%%@dirrm %%DOCSDIR%%/install +%%PORTDOCS%%@dirrm %%DOCSDIR%%/gallery +%%PORTDOCS%%@dirrm %%DOCSDIR%%/features +%%PORTDOCS%%@dirrm %%DOCSDIR%%/download +%%PORTDOCS%%@dirrm %%DOCSDIR%%/data +%%PORTDOCS%%@dirrm %%DOCSDIR%%/cookbook +%%PORTDOCS%%@dirrm %%DOCSDIR%%/controls +%%PORTDOCS%%@dirrm %%DOCSDIR%%/config +%%PORTDOCS%%@dirrm %%DOCSDIR%%/competition +%%PORTDOCS%%@dirrm %%DOCSDIR%%/commands +%%PORTDOCS%%@dirrm %%DOCSDIR%%/changes +%%PORTDOCS%%@dirrm %%DOCSDIR%%/bugfixes +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%%%EXAMPLESDIR%%/1mal.script %%PORTDOCS%%%%EXAMPLESDIR%%/2fcp.script %%PORTDOCS%%%%EXAMPLESDIR%%/2omf.script diff --git a/biology/gff2ps/pkg-plist b/biology/gff2ps/pkg-plist index 710a9a4e6067..9b7f6e1fa96a 100644 --- a/biology/gff2ps/pkg-plist +++ b/biology/gff2ps/pkg-plist @@ -1,3 +1,3 @@ bin/gff2ps -%%PORTDOCS%%share/doc/gff2ps/MANUAL_GFF2PS_v0.96.ps -%%PORTDOCS%%@dirrm share/doc/gff2ps +%%PORTDOCS%%%%DOCSDIR%%/MANUAL_GFF2PS_v0.96.ps +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/hmmer/pkg-plist b/biology/hmmer/pkg-plist index b633cb15c522..52a347da357a 100644 --- a/biology/hmmer/pkg-plist +++ b/biology/hmmer/pkg-plist @@ -14,8 +14,8 @@ bin/sfetch bin/shuffle bin/sindex bin/sreformat -%%PORTDOCS%%share/doc/hmmer/00README -%%PORTDOCS%%share/doc/hmmer/COPYRIGHT -%%PORTDOCS%%share/doc/hmmer/NOTES -%%PORTDOCS%%share/doc/hmmer/Userguide.pdf -%%PORTDOCS%%@dirrm share/doc/hmmer +%%PORTDOCS%%%%DOCSDIR%%/00README +%%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT +%%PORTDOCS%%%%DOCSDIR%%/NOTES +%%PORTDOCS%%%%DOCSDIR%%/Userguide.pdf +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/migrate/pkg-plist b/biology/migrate/pkg-plist index ff43dc3f9d5b..460d05c482ef 100644 --- a/biology/migrate/pkg-plist +++ b/biology/migrate/pkg-plist @@ -1,12 +1,12 @@ bin/migrate bin/migrate-n -%%PORTDOCS%%share/doc/migrate/HISTORY -%%PORTDOCS%%share/doc/migrate/HOWTO-PARALLEL -%%PORTDOCS%%share/doc/migrate/README -%%PORTDOCS%%share/doc/migrate/graphics/librarian.gif -%%PORTDOCS%%share/doc/migrate/graphics/mail.gif -%%PORTDOCS%%share/doc/migrate/graphics/migrate.gif -%%PORTDOCS%%share/doc/migrate/graphics/packet.gif -%%PORTDOCS%%share/doc/migrate/migrate.html -%%PORTDOCS%%@dirrm share/doc/migrate/graphics -%%PORTDOCS%%@dirrm share/doc/migrate +%%PORTDOCS%%%%DOCSDIR%%/HISTORY +%%PORTDOCS%%%%DOCSDIR%%/HOWTO-PARALLEL +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/graphics/librarian.gif +%%PORTDOCS%%%%DOCSDIR%%/graphics/mail.gif +%%PORTDOCS%%%%DOCSDIR%%/graphics/migrate.gif +%%PORTDOCS%%%%DOCSDIR%%/graphics/packet.gif +%%PORTDOCS%%%%DOCSDIR%%/migrate.html +%%PORTDOCS%%@dirrm %%DOCSDIR%%/graphics +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/molden/pkg-plist b/biology/molden/pkg-plist index 07995f6d4fe3..7979ba25abc2 100644 --- a/biology/molden/pkg-plist +++ b/biology/molden/pkg-plist @@ -1,8 +1,8 @@ bin/molden bin/moldenogl -%%PORTDOCS%%share/doc/molden/figures.ps.Z -%%PORTDOCS%%share/doc/molden/manual.ps.Z -%%PORTDOCS%%share/doc/molden/manual.txt.Z +%%PORTDOCS%%%%DOCSDIR%%/figures.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/manual.ps.Z +%%PORTDOCS%%%%DOCSDIR%%/manual.txt.Z %%PORTDOCS%%share/molden/test/adf.molf %%PORTDOCS%%share/molden/test/ampac.arc %%PORTDOCS%%share/molden/test/ampac.test @@ -51,4 +51,4 @@ bin/moldenogl %%PORTDOCS%%@dirrm share/molden/test %%PORTDOCS%%@dirrm share/molden/utils %%PORTDOCS%%@dirrm share/molden -%%PORTDOCS%%@dirrm share/doc/molden +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/mopac/pkg-plist b/biology/mopac/pkg-plist index 7a49ffbf6757..496828c7e4c4 100644 --- a/biology/mopac/pkg-plist +++ b/biology/mopac/pkg-plist @@ -1,7 +1,7 @@ bin/MOPAC7 bin/rmopac -%%PORTDOCS%%share/doc/mopac/mopac.tex -%%PORTDOCS%%share/doc/mopac/mopac.dvi +%%PORTDOCS%%%%DOCSDIR%%/mopac.tex +%%PORTDOCS%%%%DOCSDIR%%/mopac.dvi %%PORTDOCS%%share/examples/mopac/h2o.dat %%PORTDOCS%%share/mopac/test/test_cos.dat %%PORTDOCS%%share/mopac/test/test_cos.out @@ -14,6 +14,6 @@ bin/rmopac %%PORTDOCS%%share/mopac/test/test_pol.out %%PORTDOCS%%share/mopac/test/test.csh %%PORTDOCS%%@dirrm share/examples/mopac -%%PORTDOCS%%@dirrm share/doc/mopac +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm share/mopac/test %%PORTDOCS%%@dirrm share/mopac diff --git a/biology/nab/pkg-plist b/biology/nab/pkg-plist index 27719e7d3fcc..388373ba5080 100644 --- a/biology/nab/pkg-plist +++ b/biology/nab/pkg-plist @@ -16,7 +16,7 @@ include/nabtypes.h lib/cifparse.a lib/libnab.a lib/libsym.a -share/doc/nab/NAB.pdf +%%DOCSDIR%%/NAB.pdf share/nab/bin/matextract share/nab/bin/matgen share/nab/bin/matmerge @@ -358,4 +358,4 @@ share/nab/test/2strand.pdb @dirrm share/nab/dgdb @dirrm share/nab/bin @dirrm share/nab -@dirrm share/doc/nab +@dirrm %%DOCSDIR%% diff --git a/biology/ncbi-toolkit/pkg-plist b/biology/ncbi-toolkit/pkg-plist index de99af6b54d4..d9cd41b1a767 100644 --- a/biology/ncbi-toolkit/pkg-plist +++ b/biology/ncbi-toolkit/pkg-plist @@ -1,51 +1,51 @@ -%%PORTDOCS%%share/doc/ncbi-toolkit/FAQ.txt -%%PORTDOCS%%share/doc/ncbi-toolkit/README-qm -%%PORTDOCS%%share/doc/ncbi-toolkit/README.asn2xml -%%PORTDOCS%%share/doc/ncbi-toolkit/README.bcl -%%PORTDOCS%%share/doc/ncbi-toolkit/README.bls -%%PORTDOCS%%share/doc/ncbi-toolkit/README.fastacmd -%%PORTDOCS%%share/doc/ncbi-toolkit/README.formatdb -%%PORTDOCS%%share/doc/ncbi-toolkit/README.imp -%%PORTDOCS%%share/doc/ncbi-toolkit/README.mbl -%%PORTDOCS%%share/doc/ncbi-toolkit/README.nbl -%%PORTDOCS%%share/doc/ncbi-toolkit/README.pbl -%%PORTDOCS%%share/doc/ncbi-toolkit/README.rps -%%PORTDOCS%%share/doc/ncbi-toolkit/README.sdk -%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gb.txt -%%PORTDOCS%%share/doc/ncbi-toolkit/asn2gph.txt -%%PORTDOCS%%share/doc/ncbi-toolkit/dispatcher.html -%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/README -%%PORTDOCS%%share/doc/ncbi-toolkit/fa2htgs/updateHtgsDoc -%%PORTDOCS%%share/doc/ncbi-toolkit/firedialog.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/firewall.html -%%PORTDOCS%%share/doc/ncbi-toolkit/fwd_check.sh -%%PORTDOCS%%share/doc/ncbi-toolkit/images/ncbi_sequin.css -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn01.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn02.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn03.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn04.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn05.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn06.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn07.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn08.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn09.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn10.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn11.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn12.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn13.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn14.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn15.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn16.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn17.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn18.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn19.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn20.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn21.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/images/seqn22.gif -%%PORTDOCS%%share/doc/ncbi-toolkit/ncbixml.txt -%%PORTDOCS%%share/doc/ncbi-toolkit/sdk.doc -%%PORTDOCS%%share/doc/ncbi-toolkit/sequin.htm -%%PORTDOCS%%share/doc/ncbi-toolkit/tbl2asn.txt +%%PORTDOCS%%%%DOCSDIR%%/FAQ.txt +%%PORTDOCS%%%%DOCSDIR%%/README-qm +%%PORTDOCS%%%%DOCSDIR%%/README.asn2xml +%%PORTDOCS%%%%DOCSDIR%%/README.bcl +%%PORTDOCS%%%%DOCSDIR%%/README.bls +%%PORTDOCS%%%%DOCSDIR%%/README.fastacmd +%%PORTDOCS%%%%DOCSDIR%%/README.formatdb +%%PORTDOCS%%%%DOCSDIR%%/README.imp +%%PORTDOCS%%%%DOCSDIR%%/README.mbl +%%PORTDOCS%%%%DOCSDIR%%/README.nbl +%%PORTDOCS%%%%DOCSDIR%%/README.pbl +%%PORTDOCS%%%%DOCSDIR%%/README.rps +%%PORTDOCS%%%%DOCSDIR%%/README.sdk +%%PORTDOCS%%%%DOCSDIR%%/asn2gb.txt +%%PORTDOCS%%%%DOCSDIR%%/asn2gph.txt +%%PORTDOCS%%%%DOCSDIR%%/dispatcher.html +%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/README +%%PORTDOCS%%%%DOCSDIR%%/fa2htgs/updateHtgsDoc +%%PORTDOCS%%%%DOCSDIR%%/firedialog.gif +%%PORTDOCS%%%%DOCSDIR%%/firewall.html +%%PORTDOCS%%%%DOCSDIR%%/fwd_check.sh +%%PORTDOCS%%%%DOCSDIR%%/images/ncbi_sequin.css +%%PORTDOCS%%%%DOCSDIR%%/images/seqn01.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn02.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn03.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn04.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn05.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn06.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn07.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn08.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn09.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn10.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn11.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn12.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn13.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn14.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn15.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn16.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn17.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn18.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn19.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn20.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn21.gif +%%PORTDOCS%%%%DOCSDIR%%/images/seqn22.gif +%%PORTDOCS%%%%DOCSDIR%%/ncbixml.txt +%%PORTDOCS%%%%DOCSDIR%%/sdk.doc +%%PORTDOCS%%%%DOCSDIR%%/sequin.htm +%%PORTDOCS%%%%DOCSDIR%%/tbl2asn.txt bin/Nentrez bin/Psequin bin/asn2ff @@ -632,6 +632,6 @@ share/ncbi-toolkit/taxlist.txt @dirrm include/ncbi @dirrm lib/ncbi @dirrm share/ncbi-toolkit -%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit/images -%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit/fa2htgs -%%PORTDOCS%%@dirrm share/doc/ncbi-toolkit +%%PORTDOCS%%@dirrm %%DOCSDIR%%/images +%%PORTDOCS%%@dirrm %%DOCSDIR%%/fa2htgs +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/ortep3/pkg-plist b/biology/ortep3/pkg-plist index de65f4e16853..b92deda426b8 100644 --- a/biology/ortep3/pkg-plist +++ b/biology/ortep3/pkg-plist @@ -1,74 +1,74 @@ bin/ortep3 -share/doc/ortep3/README.1st -share/doc/ortep3/examples/000index.txt -share/doc/ortep3/examples/ATOMS.DAT -share/doc/ortep3/examples/READIN.F -share/doc/ortep3/examples/README.LYSO -share/doc/ortep3/examples/ahelix.dat -share/doc/ortep3/examples/ahelix.hp -share/doc/ortep3/examples/ahelix.ps -share/doc/ortep3/examples/amylose.dat -share/doc/ortep3/examples/amylose.hp -share/doc/ortep3/examples/amylose.ps -share/doc/ortep3/examples/b12.dat -share/doc/ortep3/examples/b12.hp -share/doc/ortep3/examples/b12.ps -share/doc/ortep3/examples/bcc.dat -share/doc/ortep3/examples/bcc.hp -share/doc/ortep3/examples/bcc.ps -share/doc/ortep3/examples/benzofuran.dat -share/doc/ortep3/examples/benzofuran.hp -share/doc/ortep3/examples/benzofuran.ps -share/doc/ortep3/examples/cubane.dat -share/doc/ortep3/examples/cubane.hp -share/doc/ortep3/examples/cubane.ps -share/doc/ortep3/examples/cyclobutane.dat -share/doc/ortep3/examples/cyclobutane.hp -share/doc/ortep3/examples/cyclobutane.ps -share/doc/ortep3/examples/diamond.dat -share/doc/ortep3/examples/diamond.hp -share/doc/ortep3/examples/diamond.ps -share/doc/ortep3/examples/fcc.dat -share/doc/ortep3/examples/fcc.hp -share/doc/ortep3/examples/fcc.ps -share/doc/ortep3/examples/graphite.dat -share/doc/ortep3/examples/graphite.hp -share/doc/ortep3/examples/graphite.ps -share/doc/ortep3/examples/hcp.dat -share/doc/ortep3/examples/hcp.hp -share/doc/ortep3/examples/hcp.ps -share/doc/ortep3/examples/hyox3h.dat -share/doc/ortep3/examples/hyox3h.hp -share/doc/ortep3/examples/hyox3h.ps -share/doc/ortep3/examples/lyso.dat -share/doc/ortep3/examples/lyso1.hp -share/doc/ortep3/examples/lyso1.ps -share/doc/ortep3/examples/lyso2.hp -share/doc/ortep3/examples/lyso2.ps -share/doc/ortep3/examples/lyso3.hp -share/doc/ortep3/examples/lyso3.ps -share/doc/ortep3/examples/mgpyrin.dat -share/doc/ortep3/examples/mgpyrin.hp -share/doc/ortep3/examples/mgpyrin.ps -share/doc/ortep3/examples/nacl.dat -share/doc/ortep3/examples/nacl.hp -share/doc/ortep3/examples/nacl.ps -share/doc/ortep3/examples/norbornanone.dat -share/doc/ortep3/examples/norbornanone.hp -share/doc/ortep3/examples/norbornanone.ps -share/doc/ortep3/examples/thiourea.dat -share/doc/ortep3/examples/thiourea.hp -share/doc/ortep3/examples/thiourea.ps -share/doc/ortep3/examples/thornitrate.dat -share/doc/ortep3/examples/thornitrate.hp -share/doc/ortep3/examples/thornitrate.ps -share/doc/ortep3/examples/xenate.dat -share/doc/ortep3/examples/xenate.hp -share/doc/ortep3/examples/xenate.ps -share/doc/ortep3/man/000readme.txt -share/doc/ortep3/man/instrsum.ps -share/doc/ortep3/src/000readme.txt -@dirrm share/doc/ortep3/examples -@dirrm share/doc/ortep3/man -@dirrm share/doc/ortep3/src -@dirrm share/doc/ortep3 +%%DOCSDIR%%/README.1st +%%DOCSDIR%%/examples/000index.txt +%%DOCSDIR%%/examples/ATOMS.DAT +%%DOCSDIR%%/examples/READIN.F +%%DOCSDIR%%/examples/README.LYSO +%%DOCSDIR%%/examples/ahelix.dat +%%DOCSDIR%%/examples/ahelix.hp +%%DOCSDIR%%/examples/ahelix.ps +%%DOCSDIR%%/examples/amylose.dat +%%DOCSDIR%%/examples/amylose.hp +%%DOCSDIR%%/examples/amylose.ps +%%DOCSDIR%%/examples/b12.dat +%%DOCSDIR%%/examples/b12.hp +%%DOCSDIR%%/examples/b12.ps +%%DOCSDIR%%/examples/bcc.dat +%%DOCSDIR%%/examples/bcc.hp +%%DOCSDIR%%/examples/bcc.ps +%%DOCSDIR%%/examples/benzofuran.dat +%%DOCSDIR%%/examples/benzofuran.hp +%%DOCSDIR%%/examples/benzofuran.ps +%%DOCSDIR%%/examples/cubane.dat +%%DOCSDIR%%/examples/cubane.hp +%%DOCSDIR%%/examples/cubane.ps +%%DOCSDIR%%/examples/cyclobutane.dat +%%DOCSDIR%%/examples/cyclobutane.hp +%%DOCSDIR%%/examples/cyclobutane.ps +%%DOCSDIR%%/examples/diamond.dat +%%DOCSDIR%%/examples/diamond.hp +%%DOCSDIR%%/examples/diamond.ps +%%DOCSDIR%%/examples/fcc.dat +%%DOCSDIR%%/examples/fcc.hp +%%DOCSDIR%%/examples/fcc.ps +%%DOCSDIR%%/examples/graphite.dat +%%DOCSDIR%%/examples/graphite.hp +%%DOCSDIR%%/examples/graphite.ps +%%DOCSDIR%%/examples/hcp.dat +%%DOCSDIR%%/examples/hcp.hp +%%DOCSDIR%%/examples/hcp.ps +%%DOCSDIR%%/examples/hyox3h.dat +%%DOCSDIR%%/examples/hyox3h.hp +%%DOCSDIR%%/examples/hyox3h.ps +%%DOCSDIR%%/examples/lyso.dat +%%DOCSDIR%%/examples/lyso1.hp +%%DOCSDIR%%/examples/lyso1.ps +%%DOCSDIR%%/examples/lyso2.hp +%%DOCSDIR%%/examples/lyso2.ps +%%DOCSDIR%%/examples/lyso3.hp +%%DOCSDIR%%/examples/lyso3.ps +%%DOCSDIR%%/examples/mgpyrin.dat +%%DOCSDIR%%/examples/mgpyrin.hp +%%DOCSDIR%%/examples/mgpyrin.ps +%%DOCSDIR%%/examples/nacl.dat +%%DOCSDIR%%/examples/nacl.hp +%%DOCSDIR%%/examples/nacl.ps +%%DOCSDIR%%/examples/norbornanone.dat +%%DOCSDIR%%/examples/norbornanone.hp +%%DOCSDIR%%/examples/norbornanone.ps +%%DOCSDIR%%/examples/thiourea.dat +%%DOCSDIR%%/examples/thiourea.hp +%%DOCSDIR%%/examples/thiourea.ps +%%DOCSDIR%%/examples/thornitrate.dat +%%DOCSDIR%%/examples/thornitrate.hp +%%DOCSDIR%%/examples/thornitrate.ps +%%DOCSDIR%%/examples/xenate.dat +%%DOCSDIR%%/examples/xenate.hp +%%DOCSDIR%%/examples/xenate.ps +%%DOCSDIR%%/man/000readme.txt +%%DOCSDIR%%/man/instrsum.ps +%%DOCSDIR%%/src/000readme.txt +@dirrm %%DOCSDIR%%/examples +@dirrm %%DOCSDIR%%/man +@dirrm %%DOCSDIR%%/src +@dirrm %%DOCSDIR%% diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist index 752da1f20a6d..72fe68191f64 100644 --- a/biology/paml/pkg-plist +++ b/biology/paml/pkg-plist @@ -7,5 +7,5 @@ bin/evolver bin/mcmctree bin/pamp bin/yn00 -%%PORTDOCS%%share/doc/paml/pamlDOC.pdf -%%PORTDOCS%%@dirrm share/doc/paml +%%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/phylip/pkg-plist b/biology/phylip/pkg-plist index 5cc2e8cbd326..0a64b8322cc6 100644 --- a/biology/phylip/pkg-plist +++ b/biology/phylip/pkg-plist @@ -33,46 +33,46 @@ bin/restml bin/retree bin/seqboot bin/treedist -%%PORTDOCS%%share/doc/phylip/clique.html -%%PORTDOCS%%share/doc/phylip/consense.html -%%PORTDOCS%%share/doc/phylip/contchar.html -%%PORTDOCS%%share/doc/phylip/contml.html -%%PORTDOCS%%share/doc/phylip/contrast.html -%%PORTDOCS%%share/doc/phylip/discrete.html -%%PORTDOCS%%share/doc/phylip/distance.html -%%PORTDOCS%%share/doc/phylip/dnacomp.html -%%PORTDOCS%%share/doc/phylip/dnadist.html -%%PORTDOCS%%share/doc/phylip/dnainvar.html -%%PORTDOCS%%share/doc/phylip/dnaml.html -%%PORTDOCS%%share/doc/phylip/dnamlk.html -%%PORTDOCS%%share/doc/phylip/dnamove.html -%%PORTDOCS%%share/doc/phylip/dnapars.html -%%PORTDOCS%%share/doc/phylip/dnapenny.html -%%PORTDOCS%%share/doc/phylip/dollop.html -%%PORTDOCS%%share/doc/phylip/dolmove.html -%%PORTDOCS%%share/doc/phylip/dolpenny.html -%%PORTDOCS%%share/doc/phylip/draw.html -%%PORTDOCS%%share/doc/phylip/drawgram.html -%%PORTDOCS%%share/doc/phylip/drawtree.html -%%PORTDOCS%%share/doc/phylip/factor.html -%%PORTDOCS%%share/doc/phylip/fitch.html -%%PORTDOCS%%share/doc/phylip/gendist.html -%%PORTDOCS%%share/doc/phylip/kitsch.html -%%PORTDOCS%%share/doc/phylip/main.html -%%PORTDOCS%%share/doc/phylip/mix.html -%%PORTDOCS%%share/doc/phylip/move.html -%%PORTDOCS%%share/doc/phylip/neighbor.html -%%PORTDOCS%%share/doc/phylip/pars.html -%%PORTDOCS%%share/doc/phylip/penny.html -%%PORTDOCS%%share/doc/phylip/phylip.gif -%%PORTDOCS%%share/doc/phylip/proml.html -%%PORTDOCS%%share/doc/phylip/promlk.html -%%PORTDOCS%%share/doc/phylip/protdist.html -%%PORTDOCS%%share/doc/phylip/protpars.html -%%PORTDOCS%%share/doc/phylip/restdist.html -%%PORTDOCS%%share/doc/phylip/restml.html -%%PORTDOCS%%share/doc/phylip/retree.html -%%PORTDOCS%%share/doc/phylip/seqboot.html -%%PORTDOCS%%share/doc/phylip/sequence.html -%%PORTDOCS%%share/doc/phylip/treedist.html -%%PORTDOCS%%@dirrm share/doc/phylip +%%PORTDOCS%%%%DOCSDIR%%/clique.html +%%PORTDOCS%%%%DOCSDIR%%/consense.html +%%PORTDOCS%%%%DOCSDIR%%/contchar.html +%%PORTDOCS%%%%DOCSDIR%%/contml.html +%%PORTDOCS%%%%DOCSDIR%%/contrast.html +%%PORTDOCS%%%%DOCSDIR%%/discrete.html +%%PORTDOCS%%%%DOCSDIR%%/distance.html +%%PORTDOCS%%%%DOCSDIR%%/dnacomp.html +%%PORTDOCS%%%%DOCSDIR%%/dnadist.html +%%PORTDOCS%%%%DOCSDIR%%/dnainvar.html +%%PORTDOCS%%%%DOCSDIR%%/dnaml.html +%%PORTDOCS%%%%DOCSDIR%%/dnamlk.html +%%PORTDOCS%%%%DOCSDIR%%/dnamove.html +%%PORTDOCS%%%%DOCSDIR%%/dnapars.html +%%PORTDOCS%%%%DOCSDIR%%/dnapenny.html +%%PORTDOCS%%%%DOCSDIR%%/dollop.html +%%PORTDOCS%%%%DOCSDIR%%/dolmove.html +%%PORTDOCS%%%%DOCSDIR%%/dolpenny.html +%%PORTDOCS%%%%DOCSDIR%%/draw.html +%%PORTDOCS%%%%DOCSDIR%%/drawgram.html +%%PORTDOCS%%%%DOCSDIR%%/drawtree.html +%%PORTDOCS%%%%DOCSDIR%%/factor.html +%%PORTDOCS%%%%DOCSDIR%%/fitch.html +%%PORTDOCS%%%%DOCSDIR%%/gendist.html +%%PORTDOCS%%%%DOCSDIR%%/kitsch.html +%%PORTDOCS%%%%DOCSDIR%%/main.html +%%PORTDOCS%%%%DOCSDIR%%/mix.html +%%PORTDOCS%%%%DOCSDIR%%/move.html +%%PORTDOCS%%%%DOCSDIR%%/neighbor.html +%%PORTDOCS%%%%DOCSDIR%%/pars.html +%%PORTDOCS%%%%DOCSDIR%%/penny.html +%%PORTDOCS%%%%DOCSDIR%%/phylip.gif +%%PORTDOCS%%%%DOCSDIR%%/proml.html +%%PORTDOCS%%%%DOCSDIR%%/promlk.html +%%PORTDOCS%%%%DOCSDIR%%/protdist.html +%%PORTDOCS%%%%DOCSDIR%%/protpars.html +%%PORTDOCS%%%%DOCSDIR%%/restdist.html +%%PORTDOCS%%%%DOCSDIR%%/restml.html +%%PORTDOCS%%%%DOCSDIR%%/retree.html +%%PORTDOCS%%%%DOCSDIR%%/seqboot.html +%%PORTDOCS%%%%DOCSDIR%%/sequence.html +%%PORTDOCS%%%%DOCSDIR%%/treedist.html +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/platon/pkg-plist b/biology/platon/pkg-plist index 41cab0a8c004..9faef0196168 100644 --- a/biology/platon/pkg-plist +++ b/biology/platon/pkg-plist @@ -1,90 +1,90 @@ bin/platon bin/pluton -share/doc/platon/TEST/ABSORB_EXAMPLE/s588a.hkl.gz -share/doc/platon/TEST/ABSORB_EXAMPLE/s588a.hkp.gz -share/doc/platon/TEST/ABSORB_EXAMPLE/s588a.ins -share/doc/platon/TEST/ABSORB_EXAMPLE/s588a.lis -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s555b.hkl.gz -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s555b.hkp.gz -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s555b.ins -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s555b.lis.gz -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s588a.hkl.gz -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s588a.hkp.gz -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s588a.ins -share/doc/platon/TEST/ABSTOMPA_EXAMPLE/s588a.lis.gz -share/doc/platon/TEST/ABSTOMPA_TEST/README -share/doc/platon/TEST/ABSTOMPA_TEST/abstest.hkl -share/doc/platon/TEST/ABSTOMPA_TEST/abstest.hkp -share/doc/platon/TEST/ABSTOMPA_TEST/abstest.ins -share/doc/platon/TEST/ABSTOMPA_TEST/abstest.lis -share/doc/platon/TEST/ABSTOMPA_TEST/stand.hkl -share/doc/platon/TEST/ABSTOMPA_TEST/stand.hkp -share/doc/platon/TEST/ABSTOMPA_TEST/stand.ins -share/doc/platon/TEST/ABSTOMPA_TEST/stand.lis -share/doc/platon/TEST/ABSTOMPA_TEST/test1.hkl -share/doc/platon/TEST/ABSTOMPA_TEST/test1.hkp -share/doc/platon/TEST/ABSTOMPA_TEST/test1.ins -share/doc/platon/TEST/ABSTOMPA_TEST/test1.lis -share/doc/platon/TEST/ABSTOMPA_TEST/test2.hkl -share/doc/platon/TEST/ABSTOMPA_TEST/test2.hkp -share/doc/platon/TEST/ABSTOMPA_TEST/test2.ins -share/doc/platon/TEST/ABSTOMPA_TEST/test2.lis -share/doc/platon/TEST/ADDSYM_EXAMPLE/README -share/doc/platon/TEST/ADDSYM_EXAMPLE/ex1.spf -share/doc/platon/TEST/ADDSYM_EXAMPLE/ex2.ins -share/doc/platon/TEST/ADDSYM_EXAMPLE/ex3.spf -share/doc/platon/TEST/ASYM_EXAMPLE/README -share/doc/platon/TEST/ASYM_EXAMPLE/asym.hkl.gz -share/doc/platon/TEST/ASYM_EXAMPLE/asym.hkp.gz -share/doc/platon/TEST/ASYM_EXAMPLE/asym.ins -share/doc/platon/TEST/ASYM_EXAMPLE/asym.lis.gz -share/doc/platon/TEST/DELABS_EXAMPLE/s588a.hkl.gz -share/doc/platon/TEST/DELABS_EXAMPLE/s588a.hkp.gz -share/doc/platon/TEST/DELABS_EXAMPLE/s588a.lis -share/doc/platon/TEST/DELABS_EXAMPLE/s588a.res -share/doc/platon/TEST/MULABS_EXAMPLE/shelx.hkl.gz -share/doc/platon/TEST/MULABS_EXAMPLE/shelx.hkp.gz -share/doc/platon/TEST/MULABS_EXAMPLE/shelx.ins.gz -share/doc/platon/TEST/MULABS_EXAMPLE/shelx.lis.gz -share/doc/platon/TEST/PSICOR_EXAMPLE/old_s588a.ps -share/doc/platon/TEST/PSICOR_EXAMPLE/s588a.hkl -share/doc/platon/TEST/PSICOR_EXAMPLE/s588a.hkp -share/doc/platon/TEST/PSICOR_EXAMPLE/s588a.ins -share/doc/platon/TEST/PSICOR_EXAMPLE/s588a.lis -share/doc/platon/TEST/SQUEEZE_EXAMPLE/README.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/shelxl.hkl.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/shelxl.hkp.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/shelxl.lis.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/shelxl.res.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/shelxl.sqz.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/sqz.hkl.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/sqz.lis.gz -share/doc/platon/TEST/SQUEEZE_EXAMPLE/sqz.res.gz -share/doc/platon/README -share/doc/platon/README.ADDSYM -share/doc/platon/README.LEPAGE -share/doc/platon/README.PLUTON -share/doc/platon/VALIDATION.DOC -share/doc/platon/azt.dat -share/doc/platon/bucky.spf -share/doc/platon/c476.spf -share/doc/platon/c540.cart3d -share/doc/platon/check.def -share/doc/platon/cubane.spf -share/doc/platon/cyto.spf -share/doc/platon/ml.pdb -share/doc/platon/s810c.cif -share/doc/platon/s913a.res -share/doc/platon/sucrose.spf -share/doc/platon/platon_html.tar.gz -@dirrm share/doc/platon/TEST/ABSORB_EXAMPLE -@dirrm share/doc/platon/TEST/ABSTOMPA_EXAMPLE -@dirrm share/doc/platon/TEST/ABSTOMPA_TEST -@dirrm share/doc/platon/TEST/ADDSYM_EXAMPLE -@dirrm share/doc/platon/TEST/ASYM_EXAMPLE -@dirrm share/doc/platon/TEST/DELABS_EXAMPLE -@dirrm share/doc/platon/TEST/MULABS_EXAMPLE -@dirrm share/doc/platon/TEST/PSICOR_EXAMPLE -@dirrm share/doc/platon/TEST/SQUEEZE_EXAMPLE -@dirrm share/doc/platon/TEST -@dirrm share/doc/platon +%%DOCSDIR%%/TEST/ABSORB_EXAMPLE/s588a.hkl.gz +%%DOCSDIR%%/TEST/ABSORB_EXAMPLE/s588a.hkp.gz +%%DOCSDIR%%/TEST/ABSORB_EXAMPLE/s588a.ins +%%DOCSDIR%%/TEST/ABSORB_EXAMPLE/s588a.lis +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s555b.hkl.gz +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s555b.hkp.gz +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s555b.ins +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s555b.lis.gz +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s588a.hkl.gz +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s588a.hkp.gz +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s588a.ins +%%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE/s588a.lis.gz +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/README +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/abstest.hkl +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/abstest.hkp +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/abstest.ins +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/abstest.lis +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/stand.hkl +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/stand.hkp +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/stand.ins +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/stand.lis +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test1.hkl +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test1.hkp +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test1.ins +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test1.lis +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test2.hkl +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test2.hkp +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test2.ins +%%DOCSDIR%%/TEST/ABSTOMPA_TEST/test2.lis +%%DOCSDIR%%/TEST/ADDSYM_EXAMPLE/README +%%DOCSDIR%%/TEST/ADDSYM_EXAMPLE/ex1.spf +%%DOCSDIR%%/TEST/ADDSYM_EXAMPLE/ex2.ins +%%DOCSDIR%%/TEST/ADDSYM_EXAMPLE/ex3.spf +%%DOCSDIR%%/TEST/ASYM_EXAMPLE/README +%%DOCSDIR%%/TEST/ASYM_EXAMPLE/asym.hkl.gz +%%DOCSDIR%%/TEST/ASYM_EXAMPLE/asym.hkp.gz +%%DOCSDIR%%/TEST/ASYM_EXAMPLE/asym.ins +%%DOCSDIR%%/TEST/ASYM_EXAMPLE/asym.lis.gz +%%DOCSDIR%%/TEST/DELABS_EXAMPLE/s588a.hkl.gz +%%DOCSDIR%%/TEST/DELABS_EXAMPLE/s588a.hkp.gz +%%DOCSDIR%%/TEST/DELABS_EXAMPLE/s588a.lis +%%DOCSDIR%%/TEST/DELABS_EXAMPLE/s588a.res +%%DOCSDIR%%/TEST/MULABS_EXAMPLE/shelx.hkl.gz +%%DOCSDIR%%/TEST/MULABS_EXAMPLE/shelx.hkp.gz +%%DOCSDIR%%/TEST/MULABS_EXAMPLE/shelx.ins.gz +%%DOCSDIR%%/TEST/MULABS_EXAMPLE/shelx.lis.gz +%%DOCSDIR%%/TEST/PSICOR_EXAMPLE/old_s588a.ps +%%DOCSDIR%%/TEST/PSICOR_EXAMPLE/s588a.hkl +%%DOCSDIR%%/TEST/PSICOR_EXAMPLE/s588a.hkp +%%DOCSDIR%%/TEST/PSICOR_EXAMPLE/s588a.ins +%%DOCSDIR%%/TEST/PSICOR_EXAMPLE/s588a.lis +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/README.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/shelxl.hkl.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/shelxl.hkp.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/shelxl.lis.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/shelxl.res.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/shelxl.sqz.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/sqz.hkl.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/sqz.lis.gz +%%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE/sqz.res.gz +%%DOCSDIR%%/README +%%DOCSDIR%%/README.ADDSYM +%%DOCSDIR%%/README.LEPAGE +%%DOCSDIR%%/README.PLUTON +%%DOCSDIR%%/VALIDATION.DOC +%%DOCSDIR%%/azt.dat +%%DOCSDIR%%/bucky.spf +%%DOCSDIR%%/c476.spf +%%DOCSDIR%%/c540.cart3d +%%DOCSDIR%%/check.def +%%DOCSDIR%%/cubane.spf +%%DOCSDIR%%/cyto.spf +%%DOCSDIR%%/ml.pdb +%%DOCSDIR%%/s810c.cif +%%DOCSDIR%%/s913a.res +%%DOCSDIR%%/sucrose.spf +%%DOCSDIR%%/platon_html.tar.gz +@dirrm %%DOCSDIR%%/TEST/ABSORB_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/ABSTOMPA_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/ABSTOMPA_TEST +@dirrm %%DOCSDIR%%/TEST/ADDSYM_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/ASYM_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/DELABS_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/MULABS_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/PSICOR_EXAMPLE +@dirrm %%DOCSDIR%%/TEST/SQUEEZE_EXAMPLE +@dirrm %%DOCSDIR%%/TEST +@dirrm %%DOCSDIR%% diff --git a/biology/primer3/pkg-plist b/biology/primer3/pkg-plist index 874dec84c976..a6e27b47b1d4 100644 --- a/biology/primer3/pkg-plist +++ b/biology/primer3/pkg-plist @@ -1,5 +1,5 @@ -%%PORTDOCS%%share/doc/primer3/README -%%PORTDOCS%%share/doc/primer3/example +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/example %%PORTDOCS%%share/examples/primer3/dpal_gen.pl %%PORTDOCS%%share/examples/primer3/dpal_input %%PORTDOCS%%share/examples/primer3/dpal_long_input @@ -351,7 +351,7 @@ share/primer3/primer3_www_help.html share/primer3/primer3_www_results.cgi share/primer3/primer3_www_results_help.html @dirrm share/primer3 -%%PORTDOCS%%@dirrm share/doc/primer3/ +%%PORTDOCS%%@dirrm %%DOCSDIR%%/ %%PORTDOCS%%@dirrm share/examples/primer3/primer1_list_last %%PORTDOCS%%@dirrm share/examples/primer3/primer_global_err %%PORTDOCS%%@dirrm share/examples/primer3/primer_list_last diff --git a/biology/psi88/pkg-plist b/biology/psi88/pkg-plist index 1c5f1e9f5714..dc8966983621 100644 --- a/biology/psi88/pkg-plist +++ b/biology/psi88/pkg-plist @@ -9,22 +9,22 @@ bin/preplot bin/rpsi1 bin/rpsi2 bin/rpsicon -%%PORTDOCS%%share/doc/psi88/psi88.doc -%%PORTDOCS%%share/doc/psi88/README -%%PORTDOCS%%share/doc/psi88/examples/ad634a.psi1 -%%PORTDOCS%%share/doc/psi88/examples/ad634a.psi2 -%%PORTDOCS%%share/doc/psi88/examples/ad634a.psicon -%%PORTDOCS%%share/doc/psi88/examples/ad635a.psi1 -%%PORTDOCS%%share/doc/psi88/examples/ad635a.psi2 -%%PORTDOCS%%share/doc/psi88/examples/ad635a.psicon -%%PORTDOCS%%share/doc/psi88/examples/ad636a.psi1 -%%PORTDOCS%%share/doc/psi88/examples/ad636a.psi2 -%%PORTDOCS%%share/doc/psi88/examples/ad636a.psicon -%%PORTDOCS%%share/doc/psi88/examples/ch3cl.psi1 -%%PORTDOCS%%share/doc/psi88/examples/ch3cl.psi2 -%%PORTDOCS%%share/doc/psi88/examples/ch3cl.psicon -%%PORTDOCS%%share/doc/psi88/examples/test.psi1 -%%PORTDOCS%%share/doc/psi88/examples/test.psi2 -%%PORTDOCS%%share/doc/psi88/examples/test.psicon -%%PORTDOCS%%@dirrm share/doc/psi88/examples -%%PORTDOCS%%@dirrm share/doc/psi88 +%%PORTDOCS%%%%DOCSDIR%%/psi88.doc +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/examples/ad634a.psi1 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad634a.psi2 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad634a.psicon +%%PORTDOCS%%%%DOCSDIR%%/examples/ad635a.psi1 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad635a.psi2 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad635a.psicon +%%PORTDOCS%%%%DOCSDIR%%/examples/ad636a.psi1 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad636a.psi2 +%%PORTDOCS%%%%DOCSDIR%%/examples/ad636a.psicon +%%PORTDOCS%%%%DOCSDIR%%/examples/ch3cl.psi1 +%%PORTDOCS%%%%DOCSDIR%%/examples/ch3cl.psi2 +%%PORTDOCS%%%%DOCSDIR%%/examples/ch3cl.psicon +%%PORTDOCS%%%%DOCSDIR%%/examples/test.psi1 +%%PORTDOCS%%%%DOCSDIR%%/examples/test.psi2 +%%PORTDOCS%%%%DOCSDIR%%/examples/test.psicon +%%PORTDOCS%%@dirrm %%DOCSDIR%%/examples +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist index 98efd0c43a67..71f0e6762633 100644 --- a/biology/py-biopython/pkg-plist +++ b/biology/py-biopython/pkg-plist @@ -188,34 +188,34 @@ %%PLIST_OMNIORB%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/types_idl.py %%PLIST_OMNIORB%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/types_idl.pyc %%PLIST_OMNIORB%%lib/%%PYTHON_VERSION%%/site-packages/BioCorba/types_idl.pyo -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/IntroPythonClient.pdf -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/IntroPythonClient.tex -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/IntroPythonServer.pdf -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/IntroPythonServer.tex -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/Tutorial.html -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/Tutorial.pdf -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/Tutorial.tex -%%PORTDOCS%%%%PLIST_CORBA%%share/doc/biopython/BioCorba/Tutorial.txt +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/IntroPythonClient.pdf +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/IntroPythonClient.tex +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/IntroPythonServer.pdf +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/IntroPythonServer.tex +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/Tutorial.html +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/Tutorial.pdf +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/Tutorial.tex +%%PORTDOCS%%%%PLIST_CORBA%%%%DOCSDIR%%/BioCorba/Tutorial.txt %%PORTDOCS%%%%PLIST_CORBA%%share/examples/biopython/BioCorba/a_drought.gb %%PORTDOCS%%%%PLIST_CORBA%%share/examples/biopython/BioCorba/collection_server.py %%PORTDOCS%%%%PLIST_CORBA%%share/examples/biopython/BioCorba/genbank_client.py %%PORTDOCS%%%%PLIST_CORBA%%share/examples/biopython/BioCorba/genbank_server.py -%%PORTDOCS%%share/doc/biopython/Blast.txt -%%PORTDOCS%%share/doc/biopython/Enzyme.txt -%%PORTDOCS%%share/doc/biopython/Fasta.txt -%%PORTDOCS%%share/doc/biopython/IntelliGenetics.txt -%%PORTDOCS%%share/doc/biopython/InterPro.txt -%%PORTDOCS%%share/doc/biopython/KEGG.txt -%%PORTDOCS%%share/doc/biopython/Medline.txt -%%PORTDOCS%%share/doc/biopython/Parser.txt -%%PORTDOCS%%share/doc/biopython/Prosite.txt -%%PORTDOCS%%share/doc/biopython/References.txt -%%PORTDOCS%%share/doc/biopython/SwissProt.txt -%%PORTDOCS%%share/doc/biopython/Tutorial.pdf -%%PORTDOCS%%share/doc/biopython/Tutorial.tex -%%PORTDOCS%%share/doc/biopython/Tutorial.txt -%%PORTDOCS%%share/doc/biopython/make_api_docs.py -%%PORTDOCS%%share/doc/biopython/metatool.txt +%%PORTDOCS%%%%DOCSDIR%%/Blast.txt +%%PORTDOCS%%%%DOCSDIR%%/Enzyme.txt +%%PORTDOCS%%%%DOCSDIR%%/Fasta.txt +%%PORTDOCS%%%%DOCSDIR%%/IntelliGenetics.txt +%%PORTDOCS%%%%DOCSDIR%%/InterPro.txt +%%PORTDOCS%%%%DOCSDIR%%/KEGG.txt +%%PORTDOCS%%%%DOCSDIR%%/Medline.txt +%%PORTDOCS%%%%DOCSDIR%%/Parser.txt +%%PORTDOCS%%%%DOCSDIR%%/Prosite.txt +%%PORTDOCS%%%%DOCSDIR%%/References.txt +%%PORTDOCS%%%%DOCSDIR%%/SwissProt.txt +%%PORTDOCS%%%%DOCSDIR%%/Tutorial.pdf +%%PORTDOCS%%%%DOCSDIR%%/Tutorial.tex +%%PORTDOCS%%%%DOCSDIR%%/Tutorial.txt +%%PORTDOCS%%%%DOCSDIR%%/make_api_docs.py +%%PORTDOCS%%%%DOCSDIR%%/metatool.txt %%PORTDOCS%%share/examples/biopython/GenBank/check_output.py %%PORTDOCS%%share/examples/biopython/GenBank/check_output_simple.py %%PORTDOCS%%share/examples/biopython/GenBank/find_parser_problems.py @@ -814,12 +814,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Align @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio %%PORTDOCS%%%%PLIST_CORBA%%@dirrm share/examples/biopython/BioCorba -%%PORTDOCS%%%%PLIST_CORBA%%@dirrm share/doc/biopython/BioCorba +%%PORTDOCS%%%%PLIST_CORBA%%@dirrm %%DOCSDIR%%/BioCorba %%PORTDOCS%%@dirrm share/examples/biopython/xbbtools %%PORTDOCS%%@dirrm share/examples/biopython/SeqGui %%PORTDOCS%%@dirrm share/examples/biopython/GenBank %%PORTDOCS%%@dirrm share/examples/biopython -%%PORTDOCS%%@dirrm share/doc/biopython +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PLIST_OMNIORB%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/bsane__POA/seqcore %%PLIST_OMNIORB%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/bsane__POA/comparison %%PLIST_OMNIORB%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/bsane__POA/collection diff --git a/biology/recombine/pkg-plist b/biology/recombine/pkg-plist index 8c01fcc4b69c..3a78fcf0ba0e 100644 --- a/biology/recombine/pkg-plist +++ b/biology/recombine/pkg-plist @@ -1,5 +1,5 @@ bin/filetran bin/recombine -%%PORTDOCS%%share/doc/recombine/rec_errors.doc -%%PORTDOCS%%share/doc/recombine/recombine.doc -%%PORTDOCS%%@dirrm share/doc/recombine +%%PORTDOCS%%%%DOCSDIR%%/rec_errors.doc +%%PORTDOCS%%%%DOCSDIR%%/recombine.doc +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/seqio/pkg-plist b/biology/seqio/pkg-plist index 4e929f3152e4..8884649c3107 100644 --- a/biology/seqio/pkg-plist +++ b/biology/seqio/pkg-plist @@ -3,30 +3,30 @@ bin/grepseq bin/idxseq bin/typeseq bin/wcseq -%%PORTDOCS%%share/doc/seqio/html/bigaln_example.html -%%PORTDOCS%%share/doc/seqio/html/examples_doc.html -%%PORTDOCS%%share/doc/seqio/html/fmtseq_doc.html -%%PORTDOCS%%share/doc/seqio/html/idxseq_doc.html -%%PORTDOCS%%share/doc/seqio/html/seqio.html -%%PORTDOCS%%share/doc/seqio/html/seqio_bioseq.html -%%PORTDOCS%%share/doc/seqio/html/seqio_changes.html -%%PORTDOCS%%share/doc/seqio/html/seqio_doc.html -%%PORTDOCS%%share/doc/seqio/html/seqio_format.html -%%PORTDOCS%%share/doc/seqio/html/seqio_progr.html -%%PORTDOCS%%share/doc/seqio/html/seqio_qref.html -%%PORTDOCS%%share/doc/seqio/html/seqio_readme.html -%%PORTDOCS%%share/doc/seqio/html/seqio_toc.html -%%PORTDOCS%%share/doc/seqio/html/seqio_todo.html -%%PORTDOCS%%share/doc/seqio/html/seqio_user.html -%%PORTDOCS%%share/doc/seqio/bioseq.txt -%%PORTDOCS%%share/doc/seqio/examples.doc -%%PORTDOCS%%share/doc/seqio/fmtseq.doc -%%PORTDOCS%%share/doc/seqio/format.doc -%%PORTDOCS%%share/doc/seqio/idxseq.doc -%%PORTDOCS%%share/doc/seqio/programr.doc -%%PORTDOCS%%share/doc/seqio/quickref.doc -%%PORTDOCS%%share/doc/seqio/seqio.doc -%%PORTDOCS%%share/doc/seqio/user.doc +%%PORTDOCS%%%%DOCSDIR%%/html/bigaln_example.html +%%PORTDOCS%%%%DOCSDIR%%/html/examples_doc.html +%%PORTDOCS%%%%DOCSDIR%%/html/fmtseq_doc.html +%%PORTDOCS%%%%DOCSDIR%%/html/idxseq_doc.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_bioseq.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_changes.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_doc.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_format.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_progr.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_qref.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_readme.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_toc.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_todo.html +%%PORTDOCS%%%%DOCSDIR%%/html/seqio_user.html +%%PORTDOCS%%%%DOCSDIR%%/bioseq.txt +%%PORTDOCS%%%%DOCSDIR%%/examples.doc +%%PORTDOCS%%%%DOCSDIR%%/fmtseq.doc +%%PORTDOCS%%%%DOCSDIR%%/format.doc +%%PORTDOCS%%%%DOCSDIR%%/idxseq.doc +%%PORTDOCS%%%%DOCSDIR%%/programr.doc +%%PORTDOCS%%%%DOCSDIR%%/quickref.doc +%%PORTDOCS%%%%DOCSDIR%%/seqio.doc +%%PORTDOCS%%%%DOCSDIR%%/user.doc %%PORTDOCS%%share/examples/seqio/example1.c %%PORTDOCS%%share/examples/seqio/example2.c %%PORTDOCS%%share/examples/seqio/example3.c @@ -34,6 +34,6 @@ bin/wcseq %%PORTDOCS%%share/examples/seqio/seqio.c %%PORTDOCS%%share/examples/seqio/seqio.h %%PORTDOCS%%share/examples/seqio/Makefile -%%PORTDOCS%%@dirrm share/doc/seqio/html -%%PORTDOCS%%@dirrm share/doc/seqio +%%PORTDOCS%%@dirrm %%DOCSDIR%%/html +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm share/examples/seqio diff --git a/biology/tRNAscan-SE/pkg-plist b/biology/tRNAscan-SE/pkg-plist index 06992dc3d94b..3ebf814cc5c0 100644 --- a/biology/tRNAscan-SE/pkg-plist +++ b/biology/tRNAscan-SE/pkg-plist @@ -22,5 +22,5 @@ share/tRNAscan-SE/ESELC.cm share/tRNAscan-SE/Dsignal share/tRNAscan-SE/gcode.ystmito @dirrm share/tRNAscan-SE -%%PORTDOCS%%share/doc/tRNAscan-SE/Manual.ps -%%PORTDOCS%%@dirrm share/doc/tRNAscan-SE +%%PORTDOCS%%%%DOCSDIR%%/Manual.ps +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/t_coffee/pkg-plist b/biology/t_coffee/pkg-plist index c57ecd5e34fe..1100b4a356bb 100644 --- a/biology/t_coffee/pkg-plist +++ b/biology/t_coffee/pkg-plist @@ -1,9 +1,9 @@ -%%PORTDOCS%%share/doc/t_coffee/README4T-COFFEE -%%PORTDOCS%%share/doc/t_coffee/t_coffee.pdf -%%PORTDOCS%%share/doc/t_coffee/t_coffee_doc.doc -%%PORTDOCS%%share/doc/t_coffee/t_coffee_doc.html -%%PORTDOCS%%share/doc/t_coffee/t_coffee_doc.pdf -%%PORTDOCS%%share/doc/t_coffee/t_coffee_doc.ps +%%PORTDOCS%%%%DOCSDIR%%/README4T-COFFEE +%%PORTDOCS%%%%DOCSDIR%%/t_coffee.pdf +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.doc +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.html +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.pdf +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.ps %%PORTDOCS%%share/examples/t_coffee/seq/1aab_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aboA_ref1.pep %%PORTDOCS%%share/examples/t_coffee/seq/1aboA_ref2.pep @@ -302,4 +302,4 @@ bin/t_coffee %%PORTDOCS%%@dirrm share/examples/t_coffee/tc_aln %%PORTDOCS%%@dirrm share/examples/t_coffee/seq %%PORTDOCS%%@dirrm share/examples/t_coffee -%%PORTDOCS%%@dirrm share/doc/t_coffee +%%PORTDOCS%%@dirrm %%DOCSDIR%% diff --git a/biology/tinker/pkg-plist b/biology/tinker/pkg-plist index 3a5deee9f83c..bb43683e15ac 100644 --- a/biology/tinker/pkg-plist +++ b/biology/tinker/pkg-plist @@ -50,26 +50,26 @@ bin/xyzedit bin/xyzint bin/xyzpdb bin/xyzsybyl -%%PORTDOCS%%share/doc/tinker/README -%%PORTDOCS%%share/doc/tinker/guide.pdf -%%PORTDOCS%%share/doc/tinker/guide.ps.gz -%%PORTDOCS%%share/doc/tinker/guide.txt -%%PORTDOCS%%share/doc/tinker/license.pdf -%%PORTDOCS%%share/doc/tinker/license.ps -%%PORTDOCS%%share/doc/tinker/license.txt -%%PORTDOCS%%share/doc/tinker/logo-bind.pdf -%%PORTDOCS%%share/doc/tinker/logo-bind.ps.gz -%%PORTDOCS%%share/doc/tinker/logo.pdf -%%PORTDOCS%%share/doc/tinker/logo.ps.gz -%%PORTDOCS%%share/doc/tinker/release-3.2 -%%PORTDOCS%%share/doc/tinker/release-3.6 -%%PORTDOCS%%share/doc/tinker/release-3.7 -%%PORTDOCS%%share/doc/tinker/release-3.8 -%%PORTDOCS%%share/doc/tinker/release-3.9 -%%PORTDOCS%%share/doc/tinker/release-4.0 -%%PORTDOCS%%share/doc/tinker/summary.pdf -%%PORTDOCS%%share/doc/tinker/summary.ps -%%PORTDOCS%%share/doc/tinker/summary.txt +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/guide.pdf +%%PORTDOCS%%%%DOCSDIR%%/guide.ps.gz +%%PORTDOCS%%%%DOCSDIR%%/guide.txt +%%PORTDOCS%%%%DOCSDIR%%/license.pdf +%%PORTDOCS%%%%DOCSDIR%%/license.ps +%%PORTDOCS%%%%DOCSDIR%%/license.txt +%%PORTDOCS%%%%DOCSDIR%%/logo-bind.pdf +%%PORTDOCS%%%%DOCSDIR%%/logo-bind.ps.gz +%%PORTDOCS%%%%DOCSDIR%%/logo.pdf +%%PORTDOCS%%%%DOCSDIR%%/logo.ps.gz +%%PORTDOCS%%%%DOCSDIR%%/release-3.2 +%%PORTDOCS%%%%DOCSDIR%%/release-3.6 +%%PORTDOCS%%%%DOCSDIR%%/release-3.7 +%%PORTDOCS%%%%DOCSDIR%%/release-3.8 +%%PORTDOCS%%%%DOCSDIR%%/release-3.9 +%%PORTDOCS%%%%DOCSDIR%%/release-4.0 +%%PORTDOCS%%%%DOCSDIR%%/summary.pdf +%%PORTDOCS%%%%DOCSDIR%%/summary.ps +%%PORTDOCS%%%%DOCSDIR%%/summary.txt %%PORTDOCS%%share/examples/tinker/README %%PORTDOCS%%share/examples/tinker/anion.dat %%PORTDOCS%%share/examples/tinker/anion.dyn0 @@ -437,7 +437,7 @@ share/tinker/params/water.prm %%PORTDOCS%%share/tinker/test/white.key %%PORTDOCS%%share/tinker/test/white.xyz share/tinker/tinker.txt -%%PORTDOCS%%@dirrm share/doc/tinker +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm share/examples/tinker %%PORTDOCS%%@dirrm share/tinker/bench @dirrm share/tinker/params diff --git a/biology/wise/pkg-plist b/biology/wise/pkg-plist index 573ea88e9d14..966e021874c6 100644 --- a/biology/wise/pkg-plist +++ b/biology/wise/pkg-plist @@ -1,15 +1,15 @@ bin/genomewise -%%PORTDOCS%%share/doc/wise/README -%%PORTDOCS%%share/doc/wise/apiend.tex -%%PORTDOCS%%share/doc/wise/appendix.tex -%%PORTDOCS%%share/doc/wise/dynamite.tex -%%PORTDOCS%%share/doc/wise/genewise21.eps -%%PORTDOCS%%share/doc/wise/genewise6.eps -%%PORTDOCS%%share/doc/wise/gettex.pl -%%PORTDOCS%%share/doc/wise/makefile -%%PORTDOCS%%share/doc/wise/wise2.tex -%%PORTDOCS%%share/doc/wise/wise2api.tex -%%PORTDOCS%%share/doc/wise/wise3arch.tex +%%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/apiend.tex +%%PORTDOCS%%%%DOCSDIR%%/appendix.tex +%%PORTDOCS%%%%DOCSDIR%%/dynamite.tex +%%PORTDOCS%%%%DOCSDIR%%/genewise21.eps +%%PORTDOCS%%%%DOCSDIR%%/genewise6.eps +%%PORTDOCS%%%%DOCSDIR%%/gettex.pl +%%PORTDOCS%%%%DOCSDIR%%/makefile +%%PORTDOCS%%%%DOCSDIR%%/wise2.tex +%%PORTDOCS%%%%DOCSDIR%%/wise2api.tex +%%PORTDOCS%%%%DOCSDIR%%/wise3arch.tex %%PORTDOCS%%share/examples/wise/README %%PORTDOCS%%share/examples/wise/db.hmm %%PORTDOCS%%share/examples/wise/hn_est.fa @@ -56,6 +56,6 @@ bin/genewise bin/genewisedb bin/psw bin/pswdb -%%PORTDOCS%%@dirrm share/doc/wise +%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm share/examples/wise @dirrm share/wise diff --git a/biology/xmolwt/pkg-plist b/biology/xmolwt/pkg-plist index d9414dad37dd..2d16b3c96b17 100644 --- a/biology/xmolwt/pkg-plist +++ b/biology/xmolwt/pkg-plist @@ -1,11 +1,11 @@ bin/gmolwt bin/molwt -%%PORTDOCS%%share/doc/xmolwt/Howtouse.jp -%%PORTDOCS%%share/doc/xmolwt/Readme -%%PORTDOCS%%share/doc/xmolwt/Xmolwt -%%PORTDOCS%%share/doc/xmolwt/dot.gtkrc -%%PORTDOCS%%share/doc/xmolwt/gmolwt.gif -%%PORTDOCS%%share/doc/xmolwt/xmolwt-e.html -%%PORTDOCS%%share/doc/xmolwt/xmolwt.gif -%%PORTDOCS%%share/doc/xmolwt/xmolwt.html -%%PORTDOCS%%@dirrm share/doc/xmolwt +%%PORTDOCS%%%%DOCSDIR%%/Howtouse.jp +%%PORTDOCS%%%%DOCSDIR%%/Readme +%%PORTDOCS%%%%DOCSDIR%%/Xmolwt +%%PORTDOCS%%%%DOCSDIR%%/dot.gtkrc +%%PORTDOCS%%%%DOCSDIR%%/gmolwt.gif +%%PORTDOCS%%%%DOCSDIR%%/xmolwt-e.html +%%PORTDOCS%%%%DOCSDIR%%/xmolwt.gif +%%PORTDOCS%%%%DOCSDIR%%/xmolwt.html +%%PORTDOCS%%@dirrm %%DOCSDIR%% |