Bump PORTREVISION for ports depending on the canonical version of GCC

in the ports tree (via Mk/bsd.default-versions.mk and lang/gcc) which
has now moved from GCC 6 to GCC 7 by default.

This includes ports
 - featuring USE_GCC=yes or USE_GCC=any,
 - featuring USES=fortran,
 - using Mk/bsd.octave.mk which in turn features USES=fortran, and those
 - with USES=compiler specifying one of openmp, nestedfct, c11, c++0x,
   c++11-lib, c++11-lang, c++14-lang, c++17-lang, or gcc-c++11-lib.

PR:		222542

15 files changed, 15 insertions, 10 deletions

diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile
index 9ef8c4ad1bd1..1dfb08ce0054 100644
--- a/biology/bowtie/Makefile
+++ b/biology/bowtie/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=		bowtie
 PORTVERSION=		1.1.2
-PORTREVISION=	5
+PORTREVISION=	6
 DISTVERSIONPREFIX=	v
 CATEGORIES=		biology
 
diff --git a/biology/canu/Makefile b/biology/canu/Makefile
index c6c0f25ea3d7..b3c177128c7b 100644
--- a/biology/canu/Makefile
+++ b/biology/canu/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=		canu
 DISTVERSIONPREFIX=	v
 DISTVERSION=		1.7
+PORTREVISION=	1
 CATEGORIES=		biology java perl5
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile
index 4511e7e0990d..96dea56c5b9c 100644
--- a/biology/cd-hit/Makefile
+++ b/biology/cd-hit/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	cd-hit
 PORTVERSION=	4.6.6
-PORTREVISION=	3
+PORTREVISION=	4
 DISTVERSIONPREFIX=	V
 CATEGORIES=	biology
 
diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile
index af6047b8d47b..de6b7a4f25ac 100644
--- a/biology/fasttree/Makefile
+++ b/biology/fasttree/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	FastTree
 DISTVERSION=	2.1.10
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 MASTER_SITES=	http://www.microbesonline.org/fasttree/
 EXTRACT_SUFX=	.c
diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index bf88ef41bbc3..bd4572e65fae 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	iqtree
 DISTVERSIONPREFIX=	v
 DISTVERSION=	1.6.6
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile
index 000a17575d42..d6b2964c808a 100644
--- a/biology/jellyfish/Makefile
+++ b/biology/jellyfish/Makefile
@@ -2,7 +2,7 @@
 
 PORTNAME=	jellyfish
 PORTVERSION=	2.2.6
-PORTREVISION=	2
+PORTREVISION=	3
 DISTVERSIONPREFIX=	v
 CATEGORIES=	biology
 
diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile
index 35563bc9bfe6..40dfe5cebbe6 100644
--- a/biology/kallisto/Makefile
+++ b/biology/kallisto/Makefile
@@ -3,6 +3,7 @@
 PORTNAME=	kallisto
 DISTVERSIONPREFIX=	v
 DISTVERSION=	0.43.1
+PORTREVISION=	1
 CATEGORIES=	biology
 
 MAINTAINER=	jwb@FreeBSD.org
diff --git a/biology/molden/Makefile b/biology/molden/Makefile
index 586a3e7b9a4a..e87aa9060892 100644
--- a/biology/molden/Makefile
+++ b/biology/molden/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	molden
 PORTVERSION=	5.7
-PORTREVISION=	15
+PORTREVISION=	16
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	ftp://ftp.cmbi.umcn.nl/pub/molgraph/molden/
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index 2ae7554f66c6..cd032f63a06c 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mopac
 PORTVERSION=	7.${MOPAC_SUBVERSION}
-PORTREVISION=	4
+PORTREVISION=	5
 PORTEPOCH=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://bioinformatics.org/ghemical/download/%SUBDIR%/
diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile
index eafa3c939f9c..5524ca846356 100644
--- a/biology/ncbi-blast+/Makefile
+++ b/biology/ncbi-blast+/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	ncbi-blast+
 DISTVERSION=	2.7.1
+PORTREVISION=	1
 CATEGORIES=	biology perl5 python
 MASTER_SITES=	https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \
 		https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/
diff --git a/biology/psi88/Makefile b/biology/psi88/Makefile
index 009778f7dda3..1744fc89f3f5 100644
--- a/biology/psi88/Makefile
+++ b/biology/psi88/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	psi88
 PORTVERSION=	1.0
-PORTREVISION=	12
+PORTREVISION=	13
 CATEGORIES=	biology
 MASTER_SITES=	http://www.ccl.net/cca/software/SOURCES/FORTRAN/psi88/
 DISTNAME=	${PORTNAME}
diff --git a/biology/seqan-apps/Makefile b/biology/seqan-apps/Makefile
index c190b1878644..1013e9180471 100644
--- a/biology/seqan-apps/Makefile
+++ b/biology/seqan-apps/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	seqan-apps
 DISTVERSIONPREFIX=	seqan-v
 DISTVERSION=	2.4.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	biology
 
 MAINTAINER=	h2+fbsdports@fsfe.org
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile
index c032bca677f9..080613c57b9f 100644
--- a/biology/stacks/Makefile
+++ b/biology/stacks/Makefile
@@ -2,6 +2,7 @@
 
 PORTNAME=	stacks
 DISTVERSION=	1.48
+PORTREVISION=	1
 CATEGORIES=	biology
 MASTER_SITES=	http://catchenlab.life.illinois.edu/stacks/source/
 
diff --git a/biology/t_coffee/Makefile b/biology/t_coffee/Makefile
index 3be25526d9f9..6bdefba3453b 100644
--- a/biology/t_coffee/Makefile
+++ b/biology/t_coffee/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	t_coffee
 PORTVERSION=	9.03
 DISTVERSIONSUFFIX=	.r1318
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	biology
 MASTER_SITES=	http://www.tcoffee.org/Packages/Stable/Version_${PORTVERSION}${DISTVERSIONSUFFIX}/
 DISTNAME=	T-COFFEE_distribution_Version_${PORTVERSION}${DISTVERSIONSUFFIX}
diff --git a/biology/tinker/Makefile b/biology/tinker/Makefile
index 5bf524283206..20ddfb43c791 100644
--- a/biology/tinker/Makefile
+++ b/biology/tinker/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	tinker
 PORTVERSION=	7.1.3
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	biology
 MASTER_SITES=	http://dasher.wustl.edu/tinker/downloads/