diff options
author | Frederic Culot <culot@FreeBSD.org> | 2013-02-16 14:58:51 +0000 |
---|---|---|
committer | Frederic Culot <culot@FreeBSD.org> | 2013-02-16 14:58:51 +0000 |
commit | 417a7b673b50ba8d770ab50b2b9396165510555d (patch) | |
tree | 7592121f8845bf43123237bf413c8f37d0cc041b /biology | |
parent | - Document ruby json issue (diff) |
- Update to 0.52 [1]
- Capitalize names (Perl) in COMMENT
PR: ports/176003 [1]
Submitted by: Gea-Suan Lin <gslin@gslin.org>
Notes
Notes:
svn path=/head/; revision=312356
Diffstat (limited to 'biology')
-rw-r--r-- | biology/p5-Bio-Phylo/Makefile | 19 | ||||
-rw-r--r-- | biology/p5-Bio-Phylo/distinfo | 4 | ||||
-rw-r--r-- | biology/p5-Bio-Phylo/pkg-plist | 16 |
3 files changed, 26 insertions, 13 deletions
diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile index 9d2409de7bb6..de3ab85500cc 100644 --- a/biology/p5-Bio-Phylo/Makefile +++ b/biology/p5-Bio-Phylo/Makefile @@ -1,18 +1,14 @@ -# New ports collection makefile for: Bio-Phylo -# Date created: 12 Mar 2006 -# Whom: Aaron Dalton <aaron@FreeBSD.org> -# +# Created by: Aaron Dalton <aaron@FreeBSD.org> # $FreeBSD$ -# PORTNAME= Bio-Phylo -PORTVERSION= 0.50 +PORTVERSION= 0.52 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- MAINTAINER= perl@FreeBSD.org -COMMENT= Phylogenetic analysis using perl +COMMENT= Phylogenetic analysis using Perl LICENSE= ART10 GPLv1 LICENSE_COMB= dual @@ -40,11 +36,14 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Forest::DrawNode.3 \ Bio::Phylo::Forest::DrawTree.3 \ Bio::Phylo::Forest::Node.3 \ + Bio::Phylo::Forest::NodeRole.3 \ Bio::Phylo::Forest::Tree.3 \ + Bio::Phylo::Forest::TreeRole.3 \ Bio::Phylo::Generator.3 \ Bio::Phylo::IO.3 \ Bio::Phylo::Identifiable.3 \ Bio::Phylo::Listable.3 \ + Bio::Phylo::ListableRole.3 \ Bio::Phylo::Manual.3 \ Bio::Phylo::Matrices.3 \ Bio::Phylo::Matrices::Character.3 \ @@ -59,7 +58,9 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Matrices::Datatype::Rna.3 \ Bio::Phylo::Matrices::Datatype::Standard.3 \ Bio::Phylo::Matrices::Datum.3 \ + Bio::Phylo::Matrices::DatumRole.3 \ Bio::Phylo::Matrices::Matrix.3 \ + Bio::Phylo::Matrices::MatrixRole.3 \ Bio::Phylo::Matrices::TypeSafeData.3 \ Bio::Phylo::Mediators::TaxaMediator.3 \ Bio::Phylo::NeXML::DOM.3 \ @@ -76,6 +77,7 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Parsers::Abstract.3 \ Bio::Phylo::Parsers::Adjacency.3 \ Bio::Phylo::Parsers::Fasta.3 \ + Bio::Phylo::Parsers::Figtree.3 \ Bio::Phylo::Parsers::Json.3 \ Bio::Phylo::Parsers::Newick.3 \ Bio::Phylo::Parsers::Nexml.3 \ @@ -136,7 +138,8 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Util::IDPool.3 \ Bio::Phylo::Util::Logger.3 \ Bio::Phylo::Util::OptionalInterface.3 \ - Bio::Phylo::Util::StackTrace.3 + Bio::Phylo::Util::StackTrace.3 \ + Bio::PhyloRole.3 post-patch: @${REINPLACE_CMD} -e '/NAME/ s|Bio-Phylo|Bio::Phylo|' ${WRKSRC}/Makefile.PL diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo index 3b1c0a2e5ba6..2c252b8dad94 100644 --- a/biology/p5-Bio-Phylo/distinfo +++ b/biology/p5-Bio-Phylo/distinfo @@ -1,2 +1,2 @@ -SHA256 (Bio-Phylo-0.50.tar.gz) = 89e24ac1d68096226194f89b5088910ece4239372e63666011b5fae2a6e0fe3c -SIZE (Bio-Phylo-0.50.tar.gz) = 378189 +SHA256 (Bio-Phylo-0.52.tar.gz) = 5c023acc76fb643581bc3612a80e9081ad1a795270bbc02a15f4460637c526c3 +SIZE (Bio-Phylo-0.52.tar.gz) = 398024 diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist index f98aeab859f2..6738dcdfc522 100644 --- a/biology/p5-Bio-Phylo/pkg-plist +++ b/biology/p5-Bio-Phylo/pkg-plist @@ -1,3 +1,4 @@ +%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo/.packlist %%SITE_PERL%%/Bio/Phylo.pm %%SITE_PERL%%/Bio/Phylo/EvolutionaryModels.pm %%SITE_PERL%%/Bio/Phylo/Factory.pm @@ -5,11 +6,14 @@ %%SITE_PERL%%/Bio/Phylo/Forest/DrawNode.pm %%SITE_PERL%%/Bio/Phylo/Forest/DrawTree.pm %%SITE_PERL%%/Bio/Phylo/Forest/Node.pm +%%SITE_PERL%%/Bio/Phylo/Forest/NodeRole.pm %%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm +%%SITE_PERL%%/Bio/Phylo/Forest/TreeRole.pm %%SITE_PERL%%/Bio/Phylo/Generator.pm %%SITE_PERL%%/Bio/Phylo/IO.pm %%SITE_PERL%%/Bio/Phylo/Identifiable.pm %%SITE_PERL%%/Bio/Phylo/Listable.pm +%%SITE_PERL%%/Bio/Phylo/ListableRole.pm %%SITE_PERL%%/Bio/Phylo/Manual.pod %%SITE_PERL%%/Bio/Phylo/Matrices.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Character.pm @@ -24,7 +28,9 @@ %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/DatumRole.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/MatrixRole.pm %%SITE_PERL%%/Bio/Phylo/Matrices/TypeSafeData.pm %%SITE_PERL%%/Bio/Phylo/Mediators/TaxaMediator.pm %%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna.pm @@ -47,6 +53,7 @@ %%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Adjacency.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm +%%SITE_PERL%%/Bio/Phylo/Parsers/Figtree.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Nexml.pm @@ -102,15 +109,16 @@ %%SITE_PERL%%/Bio/Phylo/Unparsers/Rss1.pm %%SITE_PERL%%/Bio/Phylo/Unparsers/Taxlist.pm %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm +%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT/Int.pm %%SITE_PERL%%/Bio/Phylo/Util/Dependency.pm %%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm %%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm %%SITE_PERL%%/Bio/Phylo/Util/Logger.pm +%%SITE_PERL%%/Bio/Phylo/Util/MOP.pm %%SITE_PERL%%/Bio/Phylo/Util/OptionalInterface.pm %%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm -%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo/.packlist -@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo -@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio +%%SITE_PERL%%/Bio/PhyloRole.pm +@dirrm %%SITE_PERL%%/Bio/Phylo/Util/CONSTANT @dirrm %%SITE_PERL%%/Bio/Phylo/Util @dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers @dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer @@ -133,3 +141,5 @@ @dirrm %%SITE_PERL%%/Bio/Phylo/Forest @dirrm %%SITE_PERL%%/Bio/Phylo @dirrmtry %%SITE_PERL%%/Bio +@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo +@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio |