diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2023-02-09 09:33:16 -0600 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2023-02-09 09:35:32 -0600 |
| commit | 5fee60fc3c922a534c2200372385de54590122a9 (patch) | |
| tree | 51dc87ede99b7f09c79ac2391398f8ba36c17000 /biology | |
| parent | devel/py-virtualenv: Update to 20.18.0 (diff) | |
biology/vcflib: Update to 1.0.7
Fixes regression in 1.0.6
Made Zig language support a default off option
Zig is experimental and problematic
Reported by: portscout
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/vcflib/Makefile | 21 | ||||
| -rw-r--r-- | biology/vcflib/distinfo | 6 | ||||
| -rw-r--r-- | biology/vcflib/pkg-plist | 2 |
3 files changed, 21 insertions, 8 deletions
diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile index 76e01dc75cbb..aa44ead39385 100644 --- a/biology/vcflib/Makefile +++ b/biology/vcflib/Makefile @@ -1,7 +1,6 @@ PORTNAME= vcflib DISTVERSIONPREFIX= v -DISTVERSION= 1.0.6 -PORTREVISION= 1 +DISTVERSION= 1.0.7 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -10,8 +9,7 @@ WWW= https://github.com/vcflib/vcflib LICENSE= MIT -BUILD_DEPENDS= zig>0:lang/zig \ - pybind11>=0:devel/pybind11 +BUILD_DEPENDS= pybind11>0:devel/pybind11 LIB_DEPENDS= libhts.so:biology/htslib \ libcurl.so:ftp/curl \ libwfa2.so:biology/wfa2-lib @@ -31,14 +29,29 @@ GH_TUPLE= ekg:fastahack:bb33265:fastahack/contrib/fastahack \ vcflib:tabixpp:v1.1.2:tabixpp/contrib/tabixpp SHEBANG_FILES= scripts/* +# FIXME: Add Zig option + lang/zig dep +OPTIONS_DEFINE= ZIG +OPTIONS_DEFAULT= +OPTIONS_SUB= yes + +ZIG_DESC= Include Zig language support + +ZIG_BUILD_DEPENDS= zig>0:lang/zig + CMAKE_ARGS+= -DWFA_GITMODULE=OFF -DWFALIB=${LOCALBASE}/lib/libwfa2.so +ZIG_CMAKE_OFF= -DZIG=OFF # Clang and GCC disable sse2 by default on i386, but it's required for vcflib CFLAGS_i386= -msse2 CONFLICTS_INSTALL= filevercmp libdisorder # include/disorder.h include/filevercmp.h include/pdflib.hpp +.include <bsd.port.options.mk> + post-stage: + ${MV} ${STAGEDIR}${PREFIX}/bin/libvcflib.a ${STAGEDIR}${PREFIX}/lib +.if ${PORT_OPTIONS:MZIG} ${MV} ${STAGEDIR}/usr/lib/libzig.a ${STAGEDIR}${PREFIX}/lib +.endif .include <bsd.port.mk> diff --git a/biology/vcflib/distinfo b/biology/vcflib/distinfo index b31324e88085..b8b4cf640ce0 100644 --- a/biology/vcflib/distinfo +++ b/biology/vcflib/distinfo @@ -1,6 +1,6 @@ -TIMESTAMP = 1675089755 -SHA256 (ekg-vcflib-v1.0.6_GH0.tar.gz) = 3598d1a9f6c936c58be6a567f249c1df879a49b57dc5a967b83a7856a16ceeb6 -SIZE (ekg-vcflib-v1.0.6_GH0.tar.gz) = 23545077 +TIMESTAMP = 1675907454 +SHA256 (ekg-vcflib-v1.0.7_GH0.tar.gz) = 37ddf471c5fec2c7fa5d1c2c2e80b3e9d30e401ee3b82156f6ae994652950a38 +SIZE (ekg-vcflib-v1.0.7_GH0.tar.gz) = 23546536 SHA256 (ekg-fastahack-bb33265_GH0.tar.gz) = f671609e1a8d7cacb00065bf307c90c46116af8e5cea939b06edcdbcc6d4bc2a SIZE (ekg-fastahack-bb33265_GH0.tar.gz) = 18760 SHA256 (ekg-filevercmp-df20dcc_GH0.tar.gz) = d34bec614be638e05eb6fa419c936b9e7de58d50b1a096a5ca02aadb7db6b059 diff --git a/biology/vcflib/pkg-plist b/biology/vcflib/pkg-plist index b5b53667909c..297ee6aaa750 100644 --- a/biology/vcflib/pkg-plist +++ b/biology/vcflib/pkg-plist @@ -157,7 +157,7 @@ include/vcf-c-api.h include/vec128int.h include/veclib_types.h lib/libvcflib.a -lib/libzig.a +%%ZIG%%lib/libzig.a lib/pyvcflib%%PYTHON_EXT_SUFFIX%%.so man/man1/abba-baba.1.gz man/man1/bFst.1.gz |