diff options
author | Martin Wilke <miwi@FreeBSD.org> | 2007-03-09 11:26:16 +0000 |
---|---|---|
committer | Martin Wilke <miwi@FreeBSD.org> | 2007-03-09 11:26:16 +0000 |
commit | d427c1e56d295b1bdeb14a908005bae014f1849a (patch) | |
tree | 0721b62bc9d0b9fc43ae5e1fa7c2bff054cda742 /biology/t_coffee/pkg-plist | |
parent | - Update to 34.26.2 (diff) |
- Update to 4.96
PR: 110080
Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer)
Notes
Notes:
svn path=/head/; revision=186994
Diffstat (limited to '')
-rw-r--r-- | biology/t_coffee/pkg-plist | 145 |
1 files changed, 139 insertions, 6 deletions
diff --git a/biology/t_coffee/pkg-plist b/biology/t_coffee/pkg-plist index 0f08b4e45ba9..a151b2311dab 100644 --- a/biology/t_coffee/pkg-plist +++ b/biology/t_coffee/pkg-plist @@ -3,16 +3,63 @@ bin/t_coffee %%PORTDOCS%%%%DOCSDIR%%/aln_compare.doc.txt %%PORTDOCS%%%%DOCSDIR%%/seq_reformat.doc.txt %%PORTDOCS%%%%DOCSDIR%%/t_coffee.pdf -%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.doc -%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.pdf -%%PORTDOCS%%%%DOCSDIR%%/t_coffee_doc.txt +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.doc +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.htm +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_technical.txt +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.doc +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.htm +%%PORTDOCS%%%%DOCSDIR%%/t_coffee_tutorial.txt +%%EXAMPLESDIR%%/2seqs.fas +%%EXAMPLESDIR%%/3d.aln +%%EXAMPLESDIR%%/3d.dnd %%EXAMPLESDIR%%/3d.fasta +%%EXAMPLESDIR%%/3d.html %%EXAMPLESDIR%%/3d_sample2.fasta %%EXAMPLESDIR%%/3d_sample3.fasta +%%EXAMPLESDIR%%/3d_sample4.aln +%%EXAMPLESDIR%%/b30.aln +%%EXAMPLESDIR%%/block1.aln +%%EXAMPLESDIR%%/block2.aln +%%EXAMPLESDIR%%/cache +%%EXAMPLESDIR%%/charge_relay_lib.tc_lib %%EXAMPLESDIR%%/clustalw_method.tc_method +%%EXAMPLESDIR%%/combined_aln.aln +%%EXAMPLESDIR%%/combined_aln.aln.aln +%%EXAMPLESDIR%%/combined_aln.aln.html %%EXAMPLESDIR%%/command_line.txt -%%EXAMPLESDIR%%/error_report.T-COFFEE.3752 +%%EXAMPLESDIR%%/error_report.T-COFFEE +%%EXAMPLESDIR%%/g0.aln +%%EXAMPLESDIR%%/x +%%EXAMPLESDIR%%/g10.aln +%%EXAMPLESDIR%%/g15.aln +%%EXAMPLESDIR%%/g5.aln +%%EXAMPLESDIR%%/marna.tc_lib +%%EXAMPLESDIR%%/new_profile1_pdb1.aln +%%EXAMPLESDIR%%/new_profile1_pdb1.html +%%EXAMPLESDIR%%/newprf.aln +%%EXAMPLESDIR%%/newprf.html +%%EXAMPLESDIR%%/p120.aln +%%EXAMPLESDIR%%/p250 +%%EXAMPLESDIR%%/p350.aln +%%EXAMPLESDIR%%/prf1.aln +%%EXAMPLESDIR%%/prf1.dnd +%%EXAMPLESDIR%%/prf1.fasta +%%EXAMPLESDIR%%/prf2.aln +%%EXAMPLESDIR%%/prf2.dnd +%%EXAMPLESDIR%%/prf2.fasta +%%EXAMPLESDIR%%/prf3.aln +%%EXAMPLESDIR%%/prf3.fasta +%%EXAMPLESDIR%%/profile1_pdb1.aln +%%EXAMPLESDIR%%/profile1_pdb1.fasta +%%EXAMPLESDIR%%/profile1_pdb1.html +%%EXAMPLESDIR%%/profile1_pdb1_1.aln +%%EXAMPLESDIR%%/profile1_pdb1_1.html +%%EXAMPLESDIR%%/profile2_pdb2.aln +%%EXAMPLESDIR%%/profile2_pdb2.dnd +%%EXAMPLESDIR%%/profile2_pdb2.fasta +%%EXAMPLESDIR%%/profile2_pdb2.html %%EXAMPLESDIR%%/sample_aln1.aln +%%EXAMPLESDIR%%/sample_aln1.dnd %%EXAMPLESDIR%%/sample_aln1.fasta %%EXAMPLESDIR%%/sample_aln1.tc_lib %%EXAMPLESDIR%%/sample_aln1_1.aln @@ -22,13 +69,19 @@ bin/t_coffee %%EXAMPLESDIR%%/sample_aln2.msf %%EXAMPLESDIR%%/sample_aln3.aln %%EXAMPLESDIR%%/sample_aln4.aln +%%EXAMPLESDIR%%/sample_aln5.aln +%%EXAMPLESDIR%%/sample_aln6.aln +%%EXAMPLESDIR%%/sample_aln6.cache +%%EXAMPLESDIR%%/sample_aln6.html +%%EXAMPLESDIR%%/sample_aln7.aln +%%EXAMPLESDIR%%/sample_aln7.cache_aln %%EXAMPLESDIR%%/sample_dnaseq1.fasta -%%EXAMPLESDIR%%/struc1.pdb %%EXAMPLESDIR%%/sample_lib1.mocca_lib %%EXAMPLESDIR%%/sample_lib1.tc_lib %%EXAMPLESDIR%%/sample_lib2.tc_lib %%EXAMPLESDIR%%/sample_lib3.tc_lib %%EXAMPLESDIR%%/sample_lib4.tc_lib02 +%%EXAMPLESDIR%%/sample_lib5.tc_lib %%EXAMPLESDIR%%/sample_list1.lib_list %%EXAMPLESDIR%%/sample_param_file.param %%EXAMPLESDIR%%/sample_profile1.aln @@ -36,22 +89,102 @@ bin/t_coffee %%EXAMPLESDIR%%/sample_seq1.aln %%EXAMPLESDIR%%/sample_seq1.fasta %%EXAMPLESDIR%%/sample_seq2.fasta +%%EXAMPLESDIR%%/seq.fas %%EXAMPLESDIR%%/sample_seq3.fasta %%EXAMPLESDIR%%/sample_seq4.fasta %%EXAMPLESDIR%%/sample_seq5.fasta +%%EXAMPLESDIR%%/sample_seq6.fasta +%%EXAMPLESDIR%%/sample_seq7.fasta +%%EXAMPLESDIR%%/sample_seq8.seq %%EXAMPLESDIR%%/sample_tree.dnd +%%EXAMPLESDIR%%/sample_tree2.dnd +%%EXAMPLESDIR%%/sample_tree3.dnd +%%EXAMPLESDIR%%/sproteases.small +%%EXAMPLESDIR%%/sproteases.small.blosum62mt.sim_file +%%EXAMPLESDIR%%/sproteases1_small.aln +%%EXAMPLESDIR%%/sproteases1_small.dnd +%%EXAMPLESDIR%%/sproteases1_small.fasta +%%EXAMPLESDIR%%/sproteases2_small.aln +%%EXAMPLESDIR%%/sproteases2_small.dnd +%%EXAMPLESDIR%%/sproteases2_small.fasta +%%EXAMPLESDIR%%/sproteases_chain.fasta +%%EXAMPLESDIR%%/sproteases_large.aln +%%EXAMPLESDIR%%/sproteases_large.code_name +%%EXAMPLESDIR%%/sproteases_large.coded.fasta +%%EXAMPLESDIR%%/sproteases_large.dnd +%%EXAMPLESDIR%%/sproteases_large.fasta +%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim2_file +%%EXAMPLESDIR%%/sproteases_large.fasta.blosum62mt.sim_file +%%EXAMPLESDIR%%/sproteases_large.fasta~ +%%EXAMPLESDIR%%/sproteases_large.html +%%EXAMPLESDIR%%/sproteases_large.muscle +%%EXAMPLESDIR%%/sproteases_large_muscle_trim.aln +%%EXAMPLESDIR%%/sproteases_oneseq.fasta +%%EXAMPLESDIR%%/sproteases_pair.fasta +%%EXAMPLESDIR%%/sproteases_small.aln +%%EXAMPLESDIR%%/sproteases_small.b62_aln +%%EXAMPLESDIR%%/sproteases_small.cw_aln +%%EXAMPLESDIR%%/sproteases_small.dnd +%%EXAMPLESDIR%%/sproteases_small.expresso +%%EXAMPLESDIR%%/sproteases_small.fasta +%%EXAMPLESDIR%%/sproteases_small.g0.aln +%%EXAMPLESDIR%%/sproteases_small.g0.cw_aln +%%EXAMPLESDIR%%/sproteases_small.g10.cw_aln +%%EXAMPLESDIR%%/sproteases_small.g10.html +%%EXAMPLESDIR%%/sproteases_small.g10.score_ascii +%%EXAMPLESDIR%%/sproteases_small.g15.cw_aln +%%EXAMPLESDIR%%/sproteases_small.g15.html +%%EXAMPLESDIR%%/sproteases_small.html +%%EXAMPLESDIR%%/struc1.pdb +%%EXAMPLESDIR%%/sproteases_small.mafft +%%EXAMPLESDIR%%/sproteases_small.mcoffee +%%EXAMPLESDIR%%/sproteases_small.muscle +%%EXAMPLESDIR%%/sproteases_small.ph +%%EXAMPLESDIR%%/sproteases_small.probcons +%%EXAMPLESDIR%%/sproteases_small.score_ascii +%%EXAMPLESDIR%%/sproteases_small.score_html +%%EXAMPLESDIR%%/sproteases_small.tc_aln +%%EXAMPLESDIR%%/sproteases_small.tc_aln.aln +%%EXAMPLESDIR%%/sproteases_small.tc_aln.html +%%EXAMPLESDIR%%/sproteases_small.template_file +%%EXAMPLESDIR%%/sproteases_small_dna.fasta %%EXAMPLESDIR%%/struc2.pdb %%EXAMPLESDIR%%/struc3.pdb %%EXAMPLESDIR%%/struc4.pdb +%%EXAMPLESDIR%%/struc5.pdb +%%EXAMPLESDIR%%/struc6.pdb +%%EXAMPLESDIR%%/struc7.pdb +%%EXAMPLESDIR%%/struc8.pdb +%%EXAMPLESDIR%%/sv.aln +%%EXAMPLESDIR%%/sv.dnd +%%EXAMPLESDIR%%/sv.fasta +%%EXAMPLESDIR%%/sv.html +%%EXAMPLESDIR%%/sv.maln %%EXAMPLESDIR%%/t_coffee.log %%EXAMPLESDIR%%/template_file.template +%%EXAMPLESDIR%%/template_file6.template +%%EXAMPLESDIR%%/template_file7.template %%EXAMPLESDIR%%/test.lib %%EXAMPLESDIR%%/test.tc_lib %%EXAMPLESDIR%%/test_lib.tc_lib +%%EXAMPLESDIR%%/three_pdb.aln +%%EXAMPLESDIR%%/three_pdb.dnd +%%EXAMPLESDIR%%/three_pdb.fasta +%%EXAMPLESDIR%%/three_pdb_two_seq.aln +%%EXAMPLESDIR%%/three_pdb_two_seq.dnd +%%EXAMPLESDIR%%/three_pdb_two_seq.fasta +%%EXAMPLESDIR%%/three_pdb_two_seq.fasta~ +%%EXAMPLESDIR%%/tlara_libraries.tar +%%EXAMPLESDIR%%/tlara_tRNA_aln10.output +%%EXAMPLESDIR%%/tlara_tRNA_aln50.output +%%EXAMPLESDIR%%/tlara_tRNA_aln51.output +%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb169168.1 +%%EXAMPLESDIR%%/tmp_file_for_extract_from_pdb89508.1 +%%EXAMPLESDIR%%/two_profiles.template_file %%DATADIR%%/license.txt %%DATADIR%%/html/t_coffee.html %%DATADIR%%/html/t_coffee4html.cgi -@dirrmtry %%DOCSDIR%% +%%PORTDOCS%%@dirrmtry %%DOCSDIR%% @dirrmtry %%EXAMPLESDIR%% @dirrm %%DATADIR%%/html @dirrmtry %%DATADIR%% |