diff options
author | Johann Visagie <wjv@FreeBSD.org> | 2002-01-22 10:54:02 +0000 |
---|---|---|
committer | Johann Visagie <wjv@FreeBSD.org> | 2002-01-22 10:54:02 +0000 |
commit | ba0a0aded45e00db6b4a38b8cdb35e0d6f01747f (patch) | |
tree | 8f774d2c2ceaedc68c8a6b0683ac501afadec2f2 /biology/py-biopython | |
parent | Add gnomemimedata 1.0.1, a MIME and Application database for GNOME. (diff) |
- Update to version 1.00a4
PR: 33719
Submitted by: Hye-Shik Chang <perky@fallin.lv>
Notes
Notes:
svn path=/head/; revision=53537
Diffstat (limited to 'biology/py-biopython')
-rw-r--r-- | biology/py-biopython/Makefile | 7 | ||||
-rw-r--r-- | biology/py-biopython/distinfo | 2 | ||||
-rw-r--r-- | biology/py-biopython/pkg-plist | 262 |
3 files changed, 261 insertions, 10 deletions
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile index ec84861dd108..bc3406ad9566 100644 --- a/biology/py-biopython/Makefile +++ b/biology/py-biopython/Makefile @@ -6,8 +6,7 @@ # PORTNAME= biopython -PORTVERSION= 1.00.a3 -PORTREVISION= 1 +PORTVERSION= 1.00.a4 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/Download/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -74,6 +73,10 @@ PLIST_OMNIORB= "@comment " PLIST_FNORB= "@comment " .endif # defined(WITH_CORBA) +.if !defined(WITHOUT_REPORTLAB) +RUN_DEPENDS+= ${PYTHON_SITELIBDIR}/reportlab/__init__.py:${PORTSDIR}/print/py-reportlab +.endif + pre-fetch: .if !defined(BATCH) && !defined(WITH_CORBA) @ ${CAT} ${FILESDIR}/corba.msg diff --git a/biology/py-biopython/distinfo b/biology/py-biopython/distinfo index 25df909a4e3f..3704fe20f076 100644 --- a/biology/py-biopython/distinfo +++ b/biology/py-biopython/distinfo @@ -1,2 +1,2 @@ -MD5 (biopython-1.00a3.tar.gz) = be59a12eeb2c0bcdd82a73dfd7bcc615 +MD5 (biopython-1.00a4.tar.gz) = bca77b4242c9a8495f60c7475b884c5d MD5 (biopython-corba-0.3.0.tar.gz) = 4465f240d22b113314c70b1dc8ebc41c diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist index 8d71f3c0cb88..98efd0c43a67 100644 --- a/biology/py-biopython/pkg-plist +++ b/biology/py-biopython/pkg-plist @@ -203,17 +203,22 @@ %%PORTDOCS%%share/doc/biopython/Blast.txt %%PORTDOCS%%share/doc/biopython/Enzyme.txt %%PORTDOCS%%share/doc/biopython/Fasta.txt +%%PORTDOCS%%share/doc/biopython/IntelliGenetics.txt +%%PORTDOCS%%share/doc/biopython/InterPro.txt %%PORTDOCS%%share/doc/biopython/KEGG.txt %%PORTDOCS%%share/doc/biopython/Medline.txt %%PORTDOCS%%share/doc/biopython/Parser.txt %%PORTDOCS%%share/doc/biopython/Prosite.txt %%PORTDOCS%%share/doc/biopython/References.txt -%%PORTDOCS%%share/doc/biopython/SCOP.txt %%PORTDOCS%%share/doc/biopython/SwissProt.txt %%PORTDOCS%%share/doc/biopython/Tutorial.pdf %%PORTDOCS%%share/doc/biopython/Tutorial.tex %%PORTDOCS%%share/doc/biopython/Tutorial.txt %%PORTDOCS%%share/doc/biopython/make_api_docs.py +%%PORTDOCS%%share/doc/biopython/metatool.txt +%%PORTDOCS%%share/examples/biopython/GenBank/check_output.py +%%PORTDOCS%%share/examples/biopython/GenBank/check_output_simple.py +%%PORTDOCS%%share/examples/biopython/GenBank/find_parser_problems.py %%PORTDOCS%%share/examples/biopython/SeqGui/SeqGui.py %%PORTDOCS%%share/examples/biopython/clustal_run.py %%PORTDOCS%%share/examples/biopython/fasta_consumer.py @@ -228,6 +233,7 @@ %%PORTDOCS%%share/examples/biopython/pubmed_search.py %%PORTDOCS%%share/examples/biopython/query_entrez.py %%PORTDOCS%%share/examples/biopython/query_pubmed.py +%%PORTDOCS%%share/examples/biopython/scop_pdb.py %%PORTDOCS%%share/examples/biopython/swissprot.py %%PORTDOCS%%share/examples/biopython/www_blast.py %%PORTDOCS%%share/examples/biopython/xbbtools/README @@ -236,7 +242,9 @@ %%PORTDOCS%%share/examples/biopython/xbbtools/testrp.fas %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_blast.py %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_blastbg.py +%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_help.py %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_io.py +%%PORTDOCS%%share/examples/biopython/xbbtools/xbb_search.py %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_sequence.py %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_translations.py %%PORTDOCS%%share/examples/biopython/xbbtools/xbb_utils.py @@ -254,6 +262,8 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/Generic.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/cfastpairwise.so +lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/csupport.so lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Align/fastpairwise.pyo @@ -269,6 +279,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/IUPAC.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Application/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/Applications.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast/NCBIStandalone.pyo @@ -296,6 +312,21 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/IUPACData.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Data/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Applications.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/Primer.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primer3_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss/primersearch_format.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings/IUPACEncoding.pyo @@ -323,6 +354,54 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/File.py lib/%%PYTHON_VERSION%%/site-packages/Bio/File.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/File.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/General.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/Point.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Evolver.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/General.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/Simple.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Organism.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/Stabilizing.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Abstract.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Diversity.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/RouletteWheel.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/Tournament.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.py lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/LocationParser.pyo @@ -335,12 +414,54 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.py lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/genbank_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank/utils.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/BasicChromosome.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Comparative.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/DisplayRepresentation.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/Distribution.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/DynamicProgramming.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/MarkovModel.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Trainer.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/Utilities.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Index.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/Record.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics/intelligenetics_format.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro/__init__.pyo @@ -356,6 +477,12 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.py lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme/enzyme_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map/map_format.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/__init__.pyo @@ -368,18 +495,99 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat/kabat_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/NLMMedlineXML.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/PubMed.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_001211_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_010319_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline/nlmmedline_011101_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Input.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/Record.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool/metatool_format.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/Record.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/ValSeq.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF/nbrf_format.pyo 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lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.py lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/RecordFile.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Cla.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Des.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.py lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Dom.pyo -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.py -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.pyc -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Lin.pyo -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.py -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.pyc -lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP/Location.pyo 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lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqIO/generic.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.py lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/SeqRecord.pyo @@ -446,6 +669,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/SProt.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.py lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/SwissProt/__init__.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/LogisticRegression.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.py lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/Tools/Classification/MaxEntropy.pyo @@ -516,6 +742,9 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/UniGene/__init__.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.py lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/ExPASy.pyo +lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.py +lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.pyc +lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/InterPro.pyo lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.py lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.pyc lib/%%PYTHON_VERSION%%/site-packages/Bio/WWW/NCBI.pyo @@ -547,22 +776,40 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/SCOP @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Rebase @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Prosite +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway/Rep +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Pathway @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/PDB +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/Gene +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork/BackPropagation +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NeuralNetwork +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/NBRF +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/MetaTool @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Medline @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Kabat +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Map @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Enzyme @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG/Compound @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/KEGG @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/InterPro +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/IntelliGenetics +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/HMM +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Graphics @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Gobase @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GenBank +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Selection +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Repair +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Mutation +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA/Crossover +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/GA @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Fasta @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/FSSP @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Enzyme @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Encodings +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Emboss @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Data @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Clustalw @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Blast +@dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Application @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Alphabet @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio/Align @dirrm lib/%%PYTHON_VERSION%%/site-packages/Bio @@ -570,6 +817,7 @@ lib/%%PYTHON_VERSION%%/site-packages/Bio/utils.pyo %%PORTDOCS%%%%PLIST_CORBA%%@dirrm share/doc/biopython/BioCorba %%PORTDOCS%%@dirrm share/examples/biopython/xbbtools %%PORTDOCS%%@dirrm share/examples/biopython/SeqGui +%%PORTDOCS%%@dirrm share/examples/biopython/GenBank %%PORTDOCS%%@dirrm share/examples/biopython %%PORTDOCS%%@dirrm share/doc/biopython %%PLIST_OMNIORB%%@dirrm lib/%%PYTHON_VERSION%%/site-packages/BioCorba/bsane__POA/seqcore |