diff options
author | Neil Blakey-Milner <nbm@FreeBSD.org> | 2000-07-31 12:12:24 +0000 |
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committer | Neil Blakey-Milner <nbm@FreeBSD.org> | 2000-07-31 12:12:24 +0000 |
commit | 7c7638c998d456deaa78283628f5f6a11e02a3c3 (patch) | |
tree | dfabdbe6d3a8c4cf71d0b0237f4549db444c5b03 /biology/py-biopython | |
parent | Update to 2.5q. (diff) |
Add py-biopython, is a collection of Python packages and modules created
by the Biopython Project, intended to provide the basis for building
bioinformatics applications in the Python language.
PR: ports/20260
Submitted by: Johann Visagie <johann@egenetics.com>
Notes
Notes:
svn path=/head/; revision=31163
Diffstat (limited to 'biology/py-biopython')
-rw-r--r-- | biology/py-biopython/Makefile | 27 | ||||
-rw-r--r-- | biology/py-biopython/distinfo | 1 | ||||
-rw-r--r-- | biology/py-biopython/pkg-comment | 1 | ||||
-rw-r--r-- | biology/py-biopython/pkg-descr | 12 | ||||
-rw-r--r-- | biology/py-biopython/pkg-plist | 124 |
5 files changed, 165 insertions, 0 deletions
diff --git a/biology/py-biopython/Makefile b/biology/py-biopython/Makefile new file mode 100644 index 000000000000..22c806cd1e81 --- /dev/null +++ b/biology/py-biopython/Makefile @@ -0,0 +1,27 @@ +# New ports collection makefile for: py-biopython +# Date created: 28 July 2000 +# Whom: Johann Visagie <johann@egenetics.com> +# +# $FreeBSD$ +# + +PORTNAME= biopython +PORTVERSION= 0.90.d01 +CATEGORIES= biology python +MASTER_SITES= http://www.biopython.org/Download/ +PKGNAMEPREFIX= py- +DISTNAME= biopython-0.90-d01 + +MAINTAINER= johann@egenetics.com + +BUILD_DEPENDS= python:${PORTSDIR}/lang/python \ + ${LOCALBASE}/lib/python1.5/site-packages/Numeric/Numeric.py:${PORTSDIR}/math/numpy \ + ${LOCALBASE}/lib/python1.5/site-packages/distutils/core.py:${PORTSDIR}/misc/py-distutils + +do-build: + @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py build) + +do-install: + @(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} python setup.py install) + +.include <bsd.port.mk> diff --git a/biology/py-biopython/distinfo b/biology/py-biopython/distinfo new file mode 100644 index 000000000000..e9642bb363e2 --- /dev/null +++ b/biology/py-biopython/distinfo @@ -0,0 +1 @@ +MD5 (biopython-0.90-d01.tar.gz) = 14ccfee8ca4f42ea963a2205b2c631c1 diff --git a/biology/py-biopython/pkg-comment b/biology/py-biopython/pkg-comment new file mode 100644 index 000000000000..0310e64fb4a0 --- /dev/null +++ b/biology/py-biopython/pkg-comment @@ -0,0 +1 @@ +A collection of Python modules for bioinformatics diff --git a/biology/py-biopython/pkg-descr b/biology/py-biopython/pkg-descr new file mode 100644 index 000000000000..2216005d2351 --- /dev/null +++ b/biology/py-biopython/pkg-descr @@ -0,0 +1,12 @@ +The Biopython Project is an international association of developers of freely +available Python tools for use in areas of computational molecular biology +such as bioinformatics and genomics. + +Biopython is a collection of Python packages and modules created by the +Biopython Project, intended to provide the basis for building bioinformatics +applications in the Python language. It is currently in developer's +(pre-alpha) release. Caveat emptor. + +WWW: http://www.biopython.org/ + +-- Johann Visagie <johann@egenetics.com> diff --git a/biology/py-biopython/pkg-plist b/biology/py-biopython/pkg-plist new file mode 100644 index 000000000000..ecf8f2ae927d --- /dev/null +++ b/biology/py-biopython/pkg-plist @@ -0,0 +1,124 @@ +lib/python1.5/site-packages/Bio/__init__.py +lib/python1.5/site-packages/Bio/ParserSupport.py +lib/python1.5/site-packages/Bio/Seq.py +lib/python1.5/site-packages/Bio/Index.py +lib/python1.5/site-packages/Bio/PropertyManager.py +lib/python1.5/site-packages/Bio/File.py +lib/python1.5/site-packages/Bio/Sequence.py +lib/python1.5/site-packages/Bio/utils.py +lib/python1.5/site-packages/Bio/SeqRecord.py +lib/python1.5/site-packages/Bio/SwissProt/__init__.py +lib/python1.5/site-packages/Bio/SwissProt/KeyWList.py +lib/python1.5/site-packages/Bio/SwissProt/SProt.py +lib/python1.5/site-packages/Bio/Blast/__init__.py +lib/python1.5/site-packages/Bio/Blast/NCBIWWW.py +lib/python1.5/site-packages/Bio/Blast/Record.py +lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.py +lib/python1.5/site-packages/Bio/Enzyme/__init__.py +lib/python1.5/site-packages/Bio/Enzyme/Enzyme.py +lib/python1.5/site-packages/Bio/Fasta/__init__.py +lib/python1.5/site-packages/Bio/Fasta/Fasta.py +lib/python1.5/site-packages/Bio/PDB/__init__.py +lib/python1.5/site-packages/Bio/Prosite/__init__.py +lib/python1.5/site-packages/Bio/Prosite/Prosite.py +lib/python1.5/site-packages/Bio/Prosite/Pattern.py +lib/python1.5/site-packages/Bio/Prosite/Prodoc.py +lib/python1.5/site-packages/Bio/Medline/Medline.py +lib/python1.5/site-packages/Bio/Medline/PubMed.py +lib/python1.5/site-packages/Bio/Medline/__init__.py +lib/python1.5/site-packages/Bio/Data/IUPACData.py +lib/python1.5/site-packages/Bio/Data/__init__.py +lib/python1.5/site-packages/Bio/Data/CodonTable.py +lib/python1.5/site-packages/Bio/Entrez/__init__.py +lib/python1.5/site-packages/Bio/Tools/mathfns.py +lib/python1.5/site-packages/Bio/Tools/__init__.py +lib/python1.5/site-packages/Bio/Tools/Transcribe.py +lib/python1.5/site-packages/Bio/Tools/listfns.py +lib/python1.5/site-packages/Bio/Tools/stringfns.py +lib/python1.5/site-packages/Bio/Tools/Translate.py +lib/python1.5/site-packages/Bio/Tools/Classification/__init__.py +lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.py +lib/python1.5/site-packages/Bio/Tools/Classification/SVM.py +lib/python1.5/site-packages/Bio/Tools/Classification/kNN.py +lib/python1.5/site-packages/Bio/WWW/__init__.py +lib/python1.5/site-packages/Bio/WWW/NCBI.py +lib/python1.5/site-packages/Bio/WWW/ExPASy.py +lib/python1.5/site-packages/Bio/WWW/SCOP.py +lib/python1.5/site-packages/Bio/Alphabet/__init__.py +lib/python1.5/site-packages/Bio/Alphabet/IUPAC.py +lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.py +lib/python1.5/site-packages/Bio/Encodings/__init__.py +lib/python1.5/site-packages/Bio/SeqIO/__init__.py +lib/python1.5/site-packages/Bio/SeqIO/FASTA.py +lib/python1.5/site-packages/Bio/PDB/__init__.pyc +lib/python1.5/site-packages/Bio/WWW/__init__.pyc +lib/python1.5/site-packages/Bio/WWW/NCBI.pyc +lib/python1.5/site-packages/Bio/WWW/ExPASy.pyc +lib/python1.5/site-packages/Bio/WWW/SCOP.pyc +lib/python1.5/site-packages/Bio/Data/IUPACData.pyc +lib/python1.5/site-packages/Bio/Data/__init__.pyc +lib/python1.5/site-packages/Bio/Data/CodonTable.pyc +lib/python1.5/site-packages/Bio/Encodings/IUPACEncoding.pyc +lib/python1.5/site-packages/Bio/Encodings/__init__.pyc +lib/python1.5/site-packages/Bio/__init__.pyc +lib/python1.5/site-packages/Bio/Blast/__init__.pyc +lib/python1.5/site-packages/Bio/Blast/NCBIWWW.pyc +lib/python1.5/site-packages/Bio/Blast/Record.pyc +lib/python1.5/site-packages/Bio/Blast/NCBIStandalone.pyc +lib/python1.5/site-packages/Bio/SeqIO/__init__.pyc +lib/python1.5/site-packages/Bio/SeqIO/FASTA.pyc +lib/python1.5/site-packages/Bio/ParserSupport.pyc +lib/python1.5/site-packages/Bio/Medline/Medline.pyc +lib/python1.5/site-packages/Bio/Medline/PubMed.pyc +lib/python1.5/site-packages/Bio/Medline/__init__.pyc +lib/python1.5/site-packages/Bio/Tools/mathfns.pyc +lib/python1.5/site-packages/Bio/Tools/__init__.pyc +lib/python1.5/site-packages/Bio/Tools/Transcribe.pyc +lib/python1.5/site-packages/Bio/Tools/listfns.pyc +lib/python1.5/site-packages/Bio/Tools/stringfns.pyc +lib/python1.5/site-packages/Bio/Tools/Translate.pyc +lib/python1.5/site-packages/Bio/Tools/Classification/__init__.pyc +lib/python1.5/site-packages/Bio/Tools/Classification/NaiveBayes.pyc +lib/python1.5/site-packages/Bio/Tools/Classification/SVM.pyc +lib/python1.5/site-packages/Bio/Tools/Classification/kNN.pyc +lib/python1.5/site-packages/Bio/Seq.pyc +lib/python1.5/site-packages/Bio/Index.pyc +lib/python1.5/site-packages/Bio/SwissProt/__init__.pyc +lib/python1.5/site-packages/Bio/SwissProt/KeyWList.pyc +lib/python1.5/site-packages/Bio/SwissProt/SProt.pyc +lib/python1.5/site-packages/Bio/Fasta/__init__.pyc +lib/python1.5/site-packages/Bio/Fasta/Fasta.pyc +lib/python1.5/site-packages/Bio/Alphabet/__init__.pyc +lib/python1.5/site-packages/Bio/Alphabet/IUPAC.pyc +lib/python1.5/site-packages/Bio/PropertyManager.pyc +lib/python1.5/site-packages/Bio/File.pyc +lib/python1.5/site-packages/Bio/Sequence.pyc +lib/python1.5/site-packages/Bio/utils.pyc +lib/python1.5/site-packages/Bio/Entrez/__init__.pyc +lib/python1.5/site-packages/Bio/Enzyme/__init__.pyc +lib/python1.5/site-packages/Bio/Enzyme/Enzyme.pyc +lib/python1.5/site-packages/Bio/SeqRecord.pyc +lib/python1.5/site-packages/Bio/Prosite/__init__.pyc +lib/python1.5/site-packages/Bio/Prosite/Prosite.pyc +lib/python1.5/site-packages/Bio/Prosite/Pattern.pyc +lib/python1.5/site-packages/Bio/Prosite/Prodoc.pyc +lib/python1.5/site-packages/Bio/Tools/Classification/cSVM.so +lib/python1.5/site-packages/Bio/Tools/clistfns.so +lib/python1.5/site-packages/Bio/Tools/cmathfns.so +lib/python1.5/site-packages/Bio/Tools/cstringfns.so +@dirrm lib/python1.5/site-packages/Bio/WWW +@dirrm lib/python1.5/site-packages/Bio/Tools/Classification +@dirrm lib/python1.5/site-packages/Bio/Tools +@dirrm lib/python1.5/site-packages/Bio/SwissProt +@dirrm lib/python1.5/site-packages/Bio/SeqIO +@dirrm lib/python1.5/site-packages/Bio/Prosite +@dirrm lib/python1.5/site-packages/Bio/PDB +@dirrm lib/python1.5/site-packages/Bio/Medline +@dirrm lib/python1.5/site-packages/Bio/Fasta +@dirrm lib/python1.5/site-packages/Bio/Enzyme +@dirrm lib/python1.5/site-packages/Bio/Entrez +@dirrm lib/python1.5/site-packages/Bio/Encodings +@dirrm lib/python1.5/site-packages/Bio/Data +@dirrm lib/python1.5/site-packages/Bio/Blast +@dirrm lib/python1.5/site-packages/Bio/Alphabet +@dirrm lib/python1.5/site-packages/Bio |