diff options
| author | Johann Visagie <wjv@FreeBSD.org> | 2001-08-22 10:02:27 +0000 |
|---|---|---|
| committer | Johann Visagie <wjv@FreeBSD.org> | 2001-08-22 10:02:27 +0000 |
| commit | 2149e941787d086d6838222d26816bbc114784b3 (patch) | |
| tree | 555bdaf3c99ec3fd3ed2a6b5f48fefdf59249bb2 /biology/phylip/pkg-descr | |
| parent | Update MASTER_SITES. (diff) | |
- Update to version 3.6.a2.1 - since the distribution tarball hadn't been
renamed between versions, this port failed checksum.
- Apply some whitespace edits and cut pkg-descr down to size to placate
portlint.
Reported by: Jason Stajich <jason@chg.mc.duke.edu>
Approved by: No response from MAINTAINER
Notes
Notes:
svn path=/head/; revision=46632
Diffstat (limited to 'biology/phylip/pkg-descr')
| -rw-r--r-- | biology/phylip/pkg-descr | 24 |
1 files changed, 1 insertions, 23 deletions
diff --git a/biology/phylip/pkg-descr b/biology/phylip/pkg-descr index 332989387f17..1e9171c8bc81 100644 --- a/biology/phylip/pkg-descr +++ b/biology/phylip/pkg-descr @@ -8,28 +8,6 @@ types that can be handled include molecular sequences, gene frequencies, restriction sites, distance matrices, and 0/1 discrete characters. -The programs are controlled through a menu, which asks the users which -options they want to set, and allows them to start the -computation. The data are read into the program from a text file, -which the user can prepare using any word processor or text editor -(but it is important that this text file not be in the special format -of that word processor -- it should instead be in "flat ASCII" or -"Text Only" format). Some sequence analysis programs such as alignment -programs can write data files in the PHYLIP format. Most of the -programs look for the data in a file called "infile" -- if they do not -find this file they then ask the user to type in the file name of the -data file. - -Output is written onto special files with names like "outfile" and -"treefile". Trees written onto "treefile" are in the Newick format, an -informal standard agreed to in 1986 by authors of a number of major -phylogeny packages. - -PHYLIP is the most widely-distributed phylogeny package, and competes -with PAUP to be the one responsible for the largest number of -published trees. PHYLIP has been in distribution since 1980, and has -over 6,000 registered users. - Joe Felsenstein joe@genetics.washington.edu Department of Genetics @@ -37,4 +15,4 @@ over 6,000 registered users. Box 357360 Seattle, Washington 98195-7360, U.S.A. -WWW: http://evolution.genetics.washington.edu/phylip.html
\ No newline at end of file +WWW: http://evolution.genetics.washington.edu/phylip.html |