diff options
author | Johann Visagie <wjv@FreeBSD.org> | 2001-08-13 10:26:44 +0000 |
---|---|---|
committer | Johann Visagie <wjv@FreeBSD.org> | 2001-08-13 10:26:44 +0000 |
commit | 102c91c252d8fac90294df5af4c5566fd95f55de (patch) | |
tree | fba8b90d6547b5383a6af46cb080a94411d7efcc /biology/p5-bioperl | |
parent | Unbroke with gnomedb-0.2.90. (diff) |
- Properly list run-time dependencies in RUN_DEPENDS in Makefile.
- Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout
pkg-plist. (Ouch, that was embarrassing.)
- Bump PORTREVISION due to the above.
- Update my email address and the project's URL in pkg-descr.
Notes
Notes:
svn path=/head/; revision=46170
Diffstat (limited to 'biology/p5-bioperl')
-rw-r--r-- | biology/p5-bioperl/Makefile | 6 | ||||
-rw-r--r-- | biology/p5-bioperl/pkg-descr | 6 | ||||
-rw-r--r-- | biology/p5-bioperl/pkg-plist | 74 |
3 files changed, 46 insertions, 40 deletions
diff --git a/biology/p5-bioperl/Makefile b/biology/p5-bioperl/Makefile index 650a028aa69c..256e1b4acc5a 100644 --- a/biology/p5-bioperl/Makefile +++ b/biology/p5-bioperl/Makefile @@ -7,6 +7,7 @@ PORTNAME= bioperl PORTVERSION= 0.7.1 +PORTREVISION= 1 CATEGORIES= biology perl5 MASTER_SITES= ftp://bioperl.org/pub/DIST/ \ http://bioperl.org/Core/Latest/ \ @@ -17,6 +18,8 @@ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} MAINTAINER= wjv@FreeBSD.org +# These are all run-time dependencies, but listing them in ${BUILD_DEPENDS} +# prevents a flood of build-time warnings. BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm:${PORTSDIR}/biology/p5-AcePerl \ ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/XML/Parser.pm:${PORTSDIR}/textproc/p5-XML-Parser \ ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/File/Temp.pm:${PORTSDIR}/devel/p5-File-Temp \ @@ -27,6 +30,7 @@ BUILD_DEPENDS= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/Ace.pm: ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Node.pm:${PORTSDIR}/textproc/p5-XML-Node \ ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Parser/PerlSAX.pm:${PORTSDIR}/textproc/p5-libxml \ ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/XML/Writer.pm:${PORTSDIR}/textproc/p5-XML-Writer +RUN_DEPENDS= ${BUILD_DEPENDS} PERL_CONFIGURE= YES @@ -44,9 +48,11 @@ EXT_WRKSRC= ${WRKDIR}/bioperl-ext-06/Bio/Ext/Align .if defined(WITH_CORBA_CLIENT) BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit .endif .if defined(WITH_CORBA_SERVER) BUILD_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit +RUN_DEPENDS+= ${LOCALBASE}/lib/perl5/site_perl/${PERL_VER}/${PERL_ARCH}/CORBA/ORBit.pm:${PORTSDIR}/devel/p5-ORBit .endif .if defined(WITH_GUI) RUN_DEPENDS+= ptksh:${PORTSDIR}/x11-toolkits/p5-Tk diff --git a/biology/p5-bioperl/pkg-descr b/biology/p5-bioperl/pkg-descr index bcf40d4ea703..da0a26873122 100644 --- a/biology/p5-bioperl/pkg-descr +++ b/biology/p5-bioperl/pkg-descr @@ -6,8 +6,8 @@ Bioperl Project. It forms the basis of a large number of bioinformatics and genomics applications. (For an interesting aside on "How Perl saved the Human Genome Project", see -http://bio.perl.org/GetStarted/tpj_ls_bio.html) +http://bioperl.org/GetStarted/tpj_ls_bio.html) -WWW: http://bio.perl.org/ +WWW: http://bioperl.org/ --- Johann Visagie <johann@egenetics.com> +-- Johann Visagie <wjv@FreeBSD.org> diff --git a/biology/p5-bioperl/pkg-plist b/biology/p5-bioperl/pkg-plist index 3c0b78e2315d..ad038a26dacf 100644 --- a/biology/p5-bioperl/pkg-plist +++ b/biology/p5-bioperl/pkg-plist @@ -1,36 +1,36 @@ -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Base.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Client.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/ORB.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/PrimarySeq.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/Seq.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/CorbaClient/SeqFeature.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/DB/Biocorba.pm -%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/5.6.0/Bio/SeqIO/biocorba.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/AnonymousSeq.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Base.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/BioEnv.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeq.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqDB.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqIterator.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/PrimarySeqVector.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Seq.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqDB.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeature.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureIterator.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/SeqFeatureVector.pm -%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/5.6.0/Bio/CorbaServer/Server.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/AnnotMap.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/BioTkPerl8_1.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/GO_Browser.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/HitDisplay.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/README -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/SeqCanvas.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/Tkpsh.pl -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Map.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_SeqSubs.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Sequence.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/Bio/Tk/bioTk_Utilities.pm -%%PLIST_GUI%%lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk/.packlist +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Base.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Client.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/ORB.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/PrimarySeq.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/Seq.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient/SeqFeature.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/DB/Biocorba.pm +%%PLIST_CORBA_CLIENT%%lib/perl5/site_perl/%%PERL_VER%%/Bio/SeqIO/biocorba.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/AnonymousSeq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Base.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/BioEnv.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqDB.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqIterator.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/PrimarySeqVector.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Seq.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqDB.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeature.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeatureIterator.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/SeqFeatureVector.pm +%%PLIST_CORBA_SERVER%%lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer/Server.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/AnnotMap.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/BioTkPerl8_1.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/GO_Browser.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/HitDisplay.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/README +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/SeqCanvas.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/Tkpsh.pl +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Map.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_SeqSubs.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Sequence.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk/bioTk_Utilities.pm +%%PLIST_GUI%%lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Tk/.packlist lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/Bio/Ext/Align.pm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/.packlist lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Ext/Align/.packlist @@ -213,10 +213,10 @@ lib/perl5/site_perl/%%PERL_VER%%/biodesign.pod lib/perl5/site_perl/%%PERL_VER%%/bioperl.pod lib/perl5/site_perl/%%PERL_VER%%/biostart.pod lib/perl5/site_perl/%%PERL_VER%%/bptutorial.pl -%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/mach/auto/Bio/Tk -%%PLIST_GUI%%@dirrm lib/perl5/site_perl/5.6.0/Bio/Tk -%%PLIST_CORBA_SERVER%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaServer -%%PLIST_CORBA_CLIENT%%@dirrm lib/perl5/site_perl/5.6.0/Bio/CorbaClient +%%PLIST_GUI%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/%%PERL_ARCH%%/auto/Bio/Tk +%%PLIST_GUI%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tk +%%PLIST_CORBA_SERVER%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaServer +%%PLIST_CORBA_CLIENT%%@dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/CorbaClient @dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation/IO @dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Variation @dirrm lib/perl5/site_perl/%%PERL_VER%%/Bio/Tools/Sim4 |