- Update to 0.14

Submitted by:	Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw>
Approved by:	maintainer timeout (3 months)

4 files changed, 48 insertions, 56 deletions

diff --git a/biology/p5-Bio-Phylo/Makefile b/biology/p5-Bio-Phylo/Makefile
index 32e882e5d35e..5c72850da4fd 100644
--- a/biology/p5-Bio-Phylo/Makefile
+++ b/biology/p5-Bio-Phylo/Makefile
@@ -6,7 +6,7 @@
 #
 
 PORTNAME=	Bio-Phylo
-PORTVERSION=	0.12
+PORTVERSION=	0.14
 CATEGORIES=	biology perl5
 MASTER_SITES=	${MASTER_SITE_PERL_CPAN}
 MASTER_SITE_SUBDIR=	Bio
@@ -15,15 +15,15 @@ PKGNAMEPREFIX=	p5-
 MAINTAINER=	aaron@FreeBSD.org
 COMMENT=	Phylogenetic analysis using perl
 
-BUILD_DEPENDS=	${SITE_PERL}/${PERL_ARCH}/Math/Random.pm:${PORTSDIR}/math/p5-Math-Random \
-		${SITE_PERL}/SVG.pm:${PORTSDIR}/textproc/p5-SVG \
-		${SITE_PERL}/Exception/Class.pm:${PORTSDIR}/devel/p5-Exception-Class \
-		${SITE_PERL}/${PERL_ARCH}/Scalar/Util.pm:${PORTSDIR}/lang/p5-Scalar-List-Utils \
-		${SITE_PERL}/IO/String.pm:${PORTSDIR}/devel/p5-IO-String \
-		${SITE_PERL}/XML/Simple.pm:${PORTSDIR}/textproc/p5-XML-Simple
-RUN_DEPENDS=	${BUILD_DEPENDS}
+RUN_DEPENDS=	p5-Exception-Class>=1.23:${PORTSDIR}/devel/p5-Exception-Class \
+		p5-Math-Random>=0.67:${PORTSDIR}/math/p5-Math-Random \
+		p5-IO-String>=1.05:${PORTSDIR}/devel/p5-IO-String \
+		p5-SVG>=1.07:${PORTSDIR}/textproc/p5-SVG
+
+MAN1=	dndtag.pl.1
 
 MAN3=	Bio::Phylo.3 \
+	Bio::Phylo::ConfigData.3 \
 	Bio::Phylo::Forest.3 \
 	Bio::Phylo::Forest::Node.3 \
 	Bio::Phylo::Forest::Tree.3 \
@@ -32,12 +32,8 @@ MAN3=	Bio::Phylo.3 \
 	Bio::Phylo::Listable.3 \
 	Bio::Phylo::Manual.3 \
 	Bio::Phylo::Matrices.3 \
-	Bio::Phylo::Matrices::Alignment.3 \
 	Bio::Phylo::Matrices::Datum.3 \
 	Bio::Phylo::Matrices::Matrix.3 \
-	Bio::Phylo::Matrices::Sequence.3 \
-	Bio::Phylo::Parsers::Fastnewick.3 \
-	Bio::Phylo::Parsers::Fastnexus.3 \
 	Bio::Phylo::Parsers::Newick.3 \
 	Bio::Phylo::Parsers::Nexus.3 \
 	Bio::Phylo::Parsers::Table.3 \
@@ -54,12 +50,12 @@ MAN3=	Bio::Phylo.3 \
 	Bio::Phylo::Util::Exceptions.3 \
 	Bio::Phylo::Util::IDPool.3
 
-PERL_CONFIGURE=	yes
+PERL_MODBUILD=	yes
 
 .include <bsd.port.pre.mk>
 
-.if ${PERL_LEVEL} < 500800
-IGNORE=	requires at least Perl 5.8 due to dependencies.  Please install lang/perl5.8 and try again
+.if ${PERL_LEVEL} < 500702
+IGNORE=	requires at least Perl 5.7.2 due to dependencies.  Please install lang/perl5.8 and try again
 .endif
 
 .include <bsd.port.post.mk>
diff --git a/biology/p5-Bio-Phylo/distinfo b/biology/p5-Bio-Phylo/distinfo
index 3102dcf208cc..94a1f401cb03 100644
--- a/biology/p5-Bio-Phylo/distinfo
+++ b/biology/p5-Bio-Phylo/distinfo
@@ -1,3 +1,3 @@
-MD5 (Bio-Phylo-0.12.tar.gz) = 82a8bbe68d7f2f2e67369c5c19ea1d72
-SHA256 (Bio-Phylo-0.12.tar.gz) = 7560554ba4e27296fa2411bf4c5beab26aef6dcaf729aa21a910509e894c455d
-SIZE (Bio-Phylo-0.12.tar.gz) = 105975
+MD5 (Bio-Phylo-0.14.tar.gz) = a3e8b1af9c5d15128b4a6a9320d89a7f
+SHA256 (Bio-Phylo-0.14.tar.gz) = d35f125ea23a70ceedffef567b6f7838bea8ab62704d09f0704c14138855c99f
+SIZE (Bio-Phylo-0.14.tar.gz) = 106299
diff --git a/biology/p5-Bio-Phylo/pkg-descr b/biology/p5-Bio-Phylo/pkg-descr
index dd1319bdbf86..a975add8811c 100644
--- a/biology/p5-Bio-Phylo/pkg-descr
+++ b/biology/p5-Bio-Phylo/pkg-descr
@@ -2,5 +2,5 @@ This is the base class for the Bio::Phylo package. All other modules
 inherit from it, the methods defined here are applicable to all. Consult 
 the manual for usage examples: Bio::Phylo::Manual.
 
-WWW: http://search.cpan.org/dist/Bio-Phylo
+WWW: http://search.cpan.org/dist/Bio-Phylo/
 Author: Rutger Vos <rvosa@sfu.ca>
diff --git a/biology/p5-Bio-Phylo/pkg-plist b/biology/p5-Bio-Phylo/pkg-plist
index d12ffba57be8..cb9587663b78 100644
--- a/biology/p5-Bio-Phylo/pkg-plist
+++ b/biology/p5-Bio-Phylo/pkg-plist
@@ -1,42 +1,38 @@
-bin/LRmb.pl
-bin/age2bl.pl
-bin/bremer.pl
-bin/dnd2svg.pl
-bin/droptip.pl
+@comment $FreeBSD$
 bin/postmb.pl
-%%SITE_PERL%%/Bio/Phylo.pm
-%%SITE_PERL%%/Bio/Phylo/Forest.pm
-%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
-%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
-%%SITE_PERL%%/Bio/Phylo/Generator.pm
-%%SITE_PERL%%/Bio/Phylo/IO.pm
-%%SITE_PERL%%/Bio/Phylo/Listable.pm
-%%SITE_PERL%%/Bio/Phylo/Manual.pod
-%%SITE_PERL%%/Bio/Phylo/Matrices.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Alignment.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
-%%SITE_PERL%%/Bio/Phylo/Matrices/Sequence.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnewick.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Fastnexus.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
-%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
-%%SITE_PERL%%/Bio/Phylo/Taxa.pm
-%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
-%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
-%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
-%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
-%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
-%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
+bin/droptip.pl
+bin/dndtag.pl
+bin/dnd2svg.pl
+bin/bremer.pl
+bin/age2bl.pl
+bin/LRmb.pl
 %%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
-%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo/.packlist
-@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Phylo
-@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
+%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
+%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
+%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
+%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
+%%SITE_PERL%%/Bio/Phylo/Taxa.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
+%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
+%%SITE_PERL%%/Bio/Phylo/Matrices.pm
+%%SITE_PERL%%/Bio/Phylo/Manual.pod
+%%SITE_PERL%%/Bio/Phylo/Listable.pm
+%%SITE_PERL%%/Bio/Phylo/IO.pm
+%%SITE_PERL%%/Bio/Phylo/Generator.pm
+%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
+%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
+%%SITE_PERL%%/Bio/Phylo/Forest.pm
+%%SITE_PERL%%/Bio/Phylo/ConfigData.pm
+%%SITE_PERL%%/Bio/Phylo.pm
 @dirrm %%SITE_PERL%%/Bio/Phylo/Util
 @dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
 @dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer