diff options
author | Rong-En Fan <rafan@FreeBSD.org> | 2008-03-30 05:07:36 +0000 |
---|---|---|
committer | Rong-En Fan <rafan@FreeBSD.org> | 2008-03-30 05:07:36 +0000 |
commit | 0e77ef5912fba1f2081d0a28119df5cfaa49e30e (patch) | |
tree | a2ee8060919a39992313538fcbcf8ce3a1e5cb27 /biology/fasta3 | |
parent | - Update to 0.02 (diff) |
- Update to 35.3.5
- Switch to .tar.gz distfile so that we don't define our do-extract
- While I'm here, using substitution for version numbers in pkg-plist
for easier upgrade
PR: ports/121690
Submitted by: Wen heping <wenheping at gmail.com>
Approved by: maintainer timeout (2 weeks)
Notes
Notes:
svn path=/head/; revision=210155
Diffstat (limited to 'biology/fasta3')
-rw-r--r-- | biology/fasta3/Makefile | 15 | ||||
-rw-r--r-- | biology/fasta3/distinfo | 6 | ||||
-rw-r--r-- | biology/fasta3/pkg-plist | 81 |
3 files changed, 49 insertions, 53 deletions
diff --git a/biology/fasta3/Makefile b/biology/fasta3/Makefile index a02bbc17f9aa..489e08950a80 100644 --- a/biology/fasta3/Makefile +++ b/biology/fasta3/Makefile @@ -7,17 +7,16 @@ # PORTNAME= fasta3 -PORTVERSION= 34.26.2 +PORTVERSION= 35.3.5 CATEGORIES= biology -MASTER_SITES= ftp://ftp.virginia.edu/pub/fasta/ +MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/ DISTNAME= fasta-${PORTVERSION} -EXTRACT_SUFX= .shar.Z MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A collection of programs for searching DNA and protein databases NO_CDROM= May not be sold or incorporated into a commercial product -WRKSRC= ${WRKDIR}/${PORTNAME} +WRKSRC= ${WRKDIR}/${DISTNAME} SUB_FILES= pkg-message MAKEFILE= Makefile.freebsd @@ -36,13 +35,7 @@ MAN1= fasta3.1 fastf3.1 fasts3.1 map_db.1 prss3.1 MLINKS= fasta3.1 tfasta3.1 fasta3.1 fastx3.1 fasta3.1 tfastx3.1 \ fasta3.1 fasty3.1 fasta3.1 tfasty3.1 fasta3.1 ssearch3.1 \ fastf3.1 tfastf3.1 fasts3.1 tfasts3.1 - -do-extract: - @ ${RM} -rf ${WRKDIR} - @ ${MKDIR} ${WRKSRC} - @ for file in ${EXTRACT_ONLY}; do \ - cd ${WRKSRC} && (${GZCAT} ${DISTDIR}/$${file} | ${SH} >/dev/null); \ - done +PLIST_SUB= VER=${PORTVERSION:R:R} post-install: ${INSTALL_DATA} ${WRKSRC}/fastlibs ${PREFIX}/etc/fastlibs.sample diff --git a/biology/fasta3/distinfo b/biology/fasta3/distinfo index 9d8e0f764bab..a491baf9ee90 100644 --- a/biology/fasta3/distinfo +++ b/biology/fasta3/distinfo @@ -1,3 +1,3 @@ -MD5 (fasta-34.26.2.shar.Z) = 5fec360037baa1a0ab8cc4b11f3259a4 -SHA256 (fasta-34.26.2.shar.Z) = cd6494cb508892e9121b7a42d18d629b7cb3d431c04d47f6b31364f40f1094ae -SIZE (fasta-34.26.2.shar.Z) = 853267 +MD5 (fasta-35.3.5.tar.gz) = d93ebf3fadf5225c10447fa428b92ff1 +SHA256 (fasta-35.3.5.tar.gz) = 02af2d016029a5c8d5aec32c498286643ef4bbfacb84b5ef22af77562f00589d +SIZE (fasta-35.3.5.tar.gz) = 614736 diff --git a/biology/fasta3/pkg-plist b/biology/fasta3/pkg-plist index b518e67cce40..4c400aec1c94 100644 --- a/biology/fasta3/pkg-plist +++ b/biology/fasta3/pkg-plist @@ -1,32 +1,33 @@ -bin/fasta34 -bin/prss34_t -bin/tfastf34_t -bin/fastf34_t -bin/fastm34_t -bin/tfasts34_t -bin/tfasty34_t -bin/fasty34_t -bin/tfastx34_t -bin/fastx34_t -bin/tfasta34_t -bin/fasts34_t -bin/fasta34_t -bin/ssearch34_t -bin/tfastf34 -bin/fastf34 -bin/prfx34 -bin/prss34 -bin/tfastm34 -bin/fastm34 -bin/tfasts34 -bin/tfasty34 -bin/fasty34 -bin/tfastx34 -bin/fastx34 -bin/fasts34 -bin/tfasta34 -bin/ssearch34 -bin/prfx34_t +bin/fasta%%VER%% +bin/fasta%%VER%%_t +bin/fastf%%VER%% +bin/fastf%%VER%%_t +bin/fastm%%VER%% +bin/fastm%%VER%%_t +bin/fasts%%VER%% +bin/fasts%%VER%%_t +bin/fastx%%VER%% +bin/fastx%%VER%%_t +bin/fasty%%VER%% +bin/fasty%%VER%%_t +bin/ggsearch%%VER%% +bin/ggsearch%%VER%%_t +bin/glsearch%%VER%% +bin/glsearch%%VER%%_t +bin/lalign%%VER%% +bin/lav2ps +bin/lav2svg +bin/ssearch%%VER%% +bin/ssearch%%VER%%_t +bin/tfastf%%VER%% +bin/tfastf%%VER%%_t +bin/tfastm%%VER%% +bin/tfasts%%VER%% +bin/tfasts%%VER%%_t +bin/tfastx%%VER%% +bin/tfastx%%VER%%_t +bin/tfasty%%VER%% +bin/tfasty%%VER%%_t etc/fastlibs.sample %%PORTDOCS%%%%DOCSDIR%%/README %%PORTDOCS%%%%DOCSDIR%%/COPYRIGHT @@ -47,18 +48,28 @@ etc/fastlibs.sample %%PORTDOCS%%%%DOCSDIR%%/readme.v32t0 %%PORTDOCS%%%%DOCSDIR%%/readme.v33t0 %%PORTDOCS%%%%DOCSDIR%%/readme.v34t0 +%%PORTDOCS%%%%DOCSDIR%%/readme.v35 %%PORTDOCS%%%%DOCSDIR%%/readme.w32 %%PORTDOCS%%%%DOCSDIR%%/fasta.defaults +%%EXAMPLESDIR%%/bovgh.seq +%%EXAMPLESDIR%%/bovprl.seq %%EXAMPLESDIR%%/egmsmg.aa +%%EXAMPLESDIR%%/gst.seq +%%EXAMPLESDIR%%/gstt1_drome.aa %%EXAMPLESDIR%%/gtm1_human.aa %%EXAMPLESDIR%%/gtt1_drome.aa %%EXAMPLESDIR%%/h10_human.aa %%EXAMPLESDIR%%/hahu.aa +%%EXAMPLESDIR%%/hsgstm1b.seq +%%EXAMPLESDIR%%/humgstd.seq %%EXAMPLESDIR%%/lcbo.aa %%EXAMPLESDIR%%/m1r.aa %%EXAMPLESDIR%%/m2.aa %%EXAMPLESDIR%%/mchu.aa %%EXAMPLESDIR%%/mgstm1.aa +%%EXAMPLESDIR%%/mgstm1.lc +%%EXAMPLESDIR%%/mgstm1.seq +%%EXAMPLESDIR%%/mgtt2_x.seq %%EXAMPLESDIR%%/ms1.aa %%EXAMPLESDIR%%/musplfm.aa %%EXAMPLESDIR%%/mwkw.aa @@ -75,18 +86,10 @@ etc/fastlibs.sample %%EXAMPLESDIR%%/prio_atepa.aa %%EXAMPLESDIR%%/qrhuld.aa %%EXAMPLESDIR%%/titin_hum.aa +%%EXAMPLESDIR%%/titin_hum.seq %%EXAMPLESDIR%%/xurt8c.aa -%%EXAMPLESDIR%%/xurtg.aa -%%EXAMPLESDIR%%/mgstm1.lc %%EXAMPLESDIR%%/xurt8c.lc -%%EXAMPLESDIR%%/bovgh.seq -%%EXAMPLESDIR%%/bovprl.seq -%%EXAMPLESDIR%%/gst.seq -%%EXAMPLESDIR%%/hsgstm1b.seq -%%EXAMPLESDIR%%/humgstd.seq -%%EXAMPLESDIR%%/mgstm1.seq -%%EXAMPLESDIR%%/mgtt2_x.seq -%%EXAMPLESDIR%%/titin_hum.seq +%%EXAMPLESDIR%%/xurtg.aa %%DATADIR%%/blosum45.mat %%DATADIR%%/blosum50.mat %%DATADIR%%/blosum62.mat |