Remove non staged ports without pending PR from b*

4 files changed, 0 insertions, 694 deletions

diff --git a/biology/embassy/Makefile b/biology/embassy/Makefile
deleted file mode 100644
index 1655a08677b5..000000000000
--- a/biology/embassy/Makefile
+++ /dev/null
@@ -1,131 +0,0 @@
-# Created by: Fernan Aguero <fernan@iib.unsamn.edu.ar>
-# $FreeBSD$
-
-PORTNAME=	embassy
-PORTVERSION=	6.2.0
-PORTREVISION=	2
-CATEGORIES=	biology
-MASTER_SITES=	ftp://emboss.open-bio.org/pub/EMBOSS/
-DIST_SUBDIR=	emboss
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Collection of contributed EMBOSS applications
-
-BROKEN=		does not fetch
-
-LIB_DEPENDS=	libnucleus.so:${PORTSDIR}/biology/emboss
-
-PREFIX?=	${LOCALBASE}/emboss
-NO_MTREE=	yes
-USE_SUBMAKE=	yes
-USES=		iconv gmake motif
-GNU_CONFIGURE=	yes
-USE_XORG=	x11
-USE_LDCONFIG=	yes
-
-OPTIONS_DEFINE=	DOMAINATRIX DOMALIGN DOMSEARCH SIGNATURE STRUCTURE \
-		EMNU ESIM4 HMMER MEMENEW MSE MYEMBOSS PHYLIPNEW TOPO \
-		VIENNA MIRA IPRSCAN CBSTOOLS
-
-DOMAINATRIX_DESC=	Protein domain apps
-DOMALIGN_DESC=	Protein domain apps
-DOMSEARCH_DESC=	Protein domain apps
-SIGNATURE_DESC=	Protein domain apps
-STRUCTURE_DESC=	Protein domain apps
-EMNU_DESC=	EMBOSS simple menu
-ESIM4_DESC=	Align cDNA/EST to genome
-HMMER_DESC=	HMM alignment and searches
-MEMENEW_DESC=	Motif detection
-MSE_DESC=	A multiple sequence screen editor
-MYEMBOSS_DESC=	Examples for developers of EMBOSS apps
-PHYLIPNEW_DESC=	Phylogeny inference
-TOPO_DESC=	Transmembrane display
-VIENNA_DESC=	RNA folding
-MIRA_DESC=	Whole Genome shotgun and EST assembler
-IPRSCAN_DESC=	InterPro scan
-CBSTOOLS_DESC=	CBS Tools
-
-OPTIONS_DEFAULT=	DOMAINATRIX DOMALIGN DOMSEARCH SIGNATURE STRUCTURE \
-		EMNU ESIM4 HMMER MEMENEW MSE MYEMBOSS PHYLIPNEW TOPO \
-		VIENNA MIRA IPRSCAN CBSTOOLS
-
-CPPFLAGS+=	-I${PREFIX}/include -I${LOCALBASE}/include -I${LOCALBASE}/emboss/include
-LDFLAGS+=	-L${PREFIX}/lib -L${LOCALBASE}/lib -L${LOCALBASE}/emboss/lib
-
-CONFIGURE_ENV=	CPPFLAGS="${CPPFLAGS}" LDFLAGS="${LDFLAGS}"
-
-EMBASSY_WRKDIR=		${WRKSRC}/EMBASSY
-DOMAINATRIX_VERSION=	0.1.0
-EMNU_VERSION=		1.05
-ESIM4_VERSION=		1.0.0
-HMMER_VERSION=		2.3.2
-MEMENEW_VERSION=	4.0.0
-MSE_VERSION=		3.0.0
-TOPO_VERSION=		2.0.0
-PHYLIPNEW_VERSION=	3.69
-DOMALIGN_VERSION=	0.1.0
-DOMSEARCH_VERSION=	0.1.0
-SIGNATURE_VERSION=	0.1.0
-STRUCTURE_VERSION=	0.1.0
-MYEMBOSS_VERSION=	6.2.0
-VIENNA_VERSION=		1.7.2
-MIRA_VERSION=		2.8.2
-IPRSCAN_VERSION=	4.3.1
-CBSTOOLS_VERSION=	1.0.0
-EMBASSY_APPS=		DOMAINATRIX EMNU ESIM4 HMMER MEMENEW MSE PHYLIPNEW \
-			TOPO DOMALIGN DOMSEARCH SIGNATURE STRUCTURE MYEMBOSS \
-			VIENNA MIRA IPRSCAN CBSTOOLS
-
-NO_STAGE=	yes
-.include <bsd.port.options.mk>
-
-.for app in ${EMBASSY_APPS}
-.if ${PORT_OPTIONS:M${app}}
-APPLIST+=	${app}
-${app}_WRKSRC=	${EMBASSY_WRKDIR}/${app}-${${app}_VERSION}
-${app}_DISTFILE=${app}-${${app}_VERSION}${EXTRACT_SUFX}
-DISTFILES+=	${${app}_DISTFILE}
-PLIST_${app}=	""
-.else
-PLIST_${app}=	"@comment "
-.endif
-PLIST_SUB+=	PLIST_${app}=${PLIST_${app}}
-.endfor
-
-do-extract:
-.for app in ${APPLIST}
-	@ ${MKDIR} ${EMBASSY_WRKDIR}
-	@ cd ${EMBASSY_WRKDIR} && ${TAR} ${EXTRACT_BEFORE_ARGS} \
-	  ${_DISTDIR}/${${app}_DISTFILE} ${EXTRACT_AFTER_ARGS}
-	@ if [ `id -u` = 0 ]; then \
-	    ${CHMOD} -R ug-s ${${app}_WRKSRC}; \
-	    ${CHOWN} -R 0:0 ${${app}_WRKSRC}; \
-	  fi
-.endfor
-
-post-extract:
-	@${REINPLACE_CMD} -e 's#emboss_doc##g' ${EMBASSY_WRKDIR}/MIRA-2.8.2/Makefile.in
-
-post-patch:
-	@${FIND} ${WRKSRC} -name configure | ${XARGS} ${REINPLACE_CMD} -e 's|echo aout|echo elf|'
-
-do-configure:
-.for app in ${APPLIST}
-	@ cd ${${app}_WRKSRC} && \
-	  ${SETENV} ${CONFIGURE_ENV} ./${CONFIGURE_SCRIPT} ${CONFIGURE_ARGS}
-.endfor
-
-do-build:
-.for app in ${APPLIST}
-	@ cd ${${app}_WRKSRC} && \
-	  ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS}
-.endfor
-
-do-install:
-.for app in ${APPLIST}
-	@ cd ${${app}_WRKSRC} && \
-	  ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_FLAGS} ${MAKEFILE} \
-	  ${MAKE_ARGS} ${INSTALL_TARGET}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/biology/embassy/distinfo b/biology/embassy/distinfo
deleted file mode 100644
index c2a406355c43..000000000000
--- a/biology/embassy/distinfo
+++ /dev/null
@@ -1,34 +0,0 @@
-SHA256 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 53b1633d8a4fec4335ffe96fff309ef2e61b38140dad916b042522e1a48d5e02
-SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 407290
-SHA256 (emboss/EMNU-1.05.tar.gz) = ccad2f9572b2667b2522e47aa8256b2f17e33a31f74f75991424af0c49ca651d
-SIZE (emboss/EMNU-1.05.tar.gz) = 368599
-SHA256 (emboss/ESIM4-1.0.0.tar.gz) = 8c02b53105f9bb95fd0acda15133ad4ac736e720df93c06ffaa6fe54b9baad10
-SIZE (emboss/ESIM4-1.0.0.tar.gz) = 406757
-SHA256 (emboss/HMMER-2.3.2.tar.gz) = fd60908ffe8fea41259480701d64c3442a6a469945dbe03fdfa5677b1a3dc6a6
-SIZE (emboss/HMMER-2.3.2.tar.gz) = 559938
-SHA256 (emboss/MEMENEW-4.0.0.tar.gz) = f5dab1527612e060e6230f579b3243e0da2da086df7ba0e280d0efbb99d5d973
-SIZE (emboss/MEMENEW-4.0.0.tar.gz) = 507901
-SHA256 (emboss/MSE-3.0.0.tar.gz) = 1fc5f5313cede53ad95122afeb69b4b588f3b564567bff9855a9691b92eea701
-SIZE (emboss/MSE-3.0.0.tar.gz) = 425691
-SHA256 (emboss/PHYLIPNEW-3.69.tar.gz) = ae0fd57a5b87961d12df8579298d5ec02a147d6678ead4b561dff2c57c5dba67
-SIZE (emboss/PHYLIPNEW-3.69.tar.gz) = 1652212
-SHA256 (emboss/TOPO-2.0.0.tar.gz) = 15f1106800ba803e2c5d79dbfa79b5d521e9ed0ca9da0ceaa77e15366613e915
-SIZE (emboss/TOPO-2.0.0.tar.gz) = 377565
-SHA256 (emboss/DOMALIGN-0.1.0.tar.gz) = 33a12d28c16039663467f34d930b2a0a6ab2ef7d987db94fd8ed4abd02b1bf9f
-SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 430542
-SHA256 (emboss/DOMSEARCH-0.1.0.tar.gz) = af2e408dcd29b9330df7c310d64c888f53d225ebb0bb5402237891fdcdea7ce3
-SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 447445
-SHA256 (emboss/SIGNATURE-0.1.0.tar.gz) = e24bda9ff60ef9940f603f4c65b7e5673d6b81ef0c19d53b294197e98bb2497c
-SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 559082
-SHA256 (emboss/STRUCTURE-0.1.0.tar.gz) = c555e1fc16b377109a1bef21116bfe0907709fb2f629d7cbb4add455bc871050
-SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 521708
-SHA256 (emboss/MYEMBOSS-6.2.0.tar.gz) = 13edbea0d11a14f67631a4cf6c69985f42c97383d8182f8815e294be03c5ebae
-SIZE (emboss/MYEMBOSS-6.2.0.tar.gz) = 322935
-SHA256 (emboss/VIENNA-1.7.2.tar.gz) = e2288e6a2f4538cce916033208ab12f0ffb8a92bb1d3ab89fae302b785171fb7
-SIZE (emboss/VIENNA-1.7.2.tar.gz) = 649028
-SHA256 (emboss/MIRA-2.8.2.tar.gz) = 9d2a64fdb1b95bb6e2ac280be3352740e9b5f498f2ff17157374a2ca9744601d
-SIZE (emboss/MIRA-2.8.2.tar.gz) = 347282
-SHA256 (emboss/IPRSCAN-4.3.1.tar.gz) = 179513e2473dc31e5b6153c29670773e7bceaaf84315156961baf8f1e292a289
-SIZE (emboss/IPRSCAN-4.3.1.tar.gz) = 345907
-SHA256 (emboss/CBSTOOLS-1.0.0.tar.gz) = 100131d86d4efeafbd63fc712c82bf493e9d174f0bc505e37bdd35ffb56182ff
-SIZE (emboss/CBSTOOLS-1.0.0.tar.gz) = 385340
diff --git a/biology/embassy/pkg-descr b/biology/embassy/pkg-descr
deleted file mode 100644
index 8a04b6c0ec88..000000000000
--- a/biology/embassy/pkg-descr
+++ /dev/null
@@ -1,14 +0,0 @@
-EMBASSY is a collection of contributed EMBOSS software. From the web
-pages:
-
- "EMBOSS is GPL licensed. The libraries are under the Lesser GPL (LGPL).
- Programs which have been included from third parties who have their own
- licencing terms are kept apart under the EMBASSY grouping.
-
- This allows the EMBOSS libraries to link to other software, and only
- requires that software to have an LGPL-compatible licence. Phylip, for
- example, fits this model.
-
- But, to the user they do look exactly like EMBOSS aplications."
-
-WWW: http://emboss.sourceforge.net/apps/#Embassy
diff --git a/biology/embassy/pkg-plist b/biology/embassy/pkg-plist
deleted file mode 100644
index ff9b9963614d..000000000000
--- a/biology/embassy/pkg-plist
+++ /dev/null
@@ -1,515 +0,0 @@
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/cathparse.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainnr.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainreso.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainseqs.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/domainsse.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/scopparse.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/acd/ssematch.acd
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/cathparse.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainnr.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainreso.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainseqs.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/domainsse.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/scopparse.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/programs/text/ssematch.txt
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/index.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/cathparse.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainnr.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainreso.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainseqs.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/domainsse.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/scopparse.html
-%%PLIST_DOMAINATRIX%%share/EMBOSS/doc/html/embassy/domainatrix/ssematch.html
-%%PLIST_DOMAINATRIX%%bin/cathparse
-%%PLIST_DOMAINATRIX%%bin/domainnr
-%%PLIST_DOMAINATRIX%%bin/domainreso
-%%PLIST_DOMAINATRIX%%bin/domainseqs
-%%PLIST_DOMAINATRIX%%bin/domainsse
-%%PLIST_DOMAINATRIX%%bin/scopparse
-%%PLIST_DOMAINATRIX%%bin/ssematch
-%%PLIST_DOMAINATRIX%%@dirrm share/EMBOSS/doc/html/embassy/domainatrix
-%%PLIST_DOMALIGN%%share/EMBOSS/acd/allversusall.acd
-%%PLIST_DOMALIGN%%share/EMBOSS/acd/domainalign.acd
-%%PLIST_DOMALIGN%%share/EMBOSS/acd/domainrep.acd
-%%PLIST_DOMALIGN%%share/EMBOSS/acd/seqalign.acd
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/allversusall.txt
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainalign.txt
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/domainrep.txt
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/programs/text/seqalign.txt
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/index.html
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/allversusall.html
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainalign.html
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/domainrep.html
-%%PLIST_DOMALIGN%%share/EMBOSS/doc/html/embassy/domalign/seqalign.html
-%%PLIST_DOMALIGN%%@dirrm share/EMBOSS/doc/html/embassy/domalign
-%%PLIST_DOMALIGN%%bin/allversusall
-%%PLIST_DOMALIGN%%bin/domainalign
-%%PLIST_DOMALIGN%%bin/domainrep
-%%PLIST_DOMALIGN%%bin/seqalign
-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqnr.acd
-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsearch.acd
-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqfraggle.acd
-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqsort.acd
-%%PLIST_DOMSEARCH%%share/EMBOSS/acd/seqwords.acd
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqfraggle.txt
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqnr.txt
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsearch.txt
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqsort.txt
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/programs/text/seqwords.txt
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/index.html
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqnr.html
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqsort.html
-%%PLIST_DOMSEARCH%%share/EMBOSS/doc/html/embassy/domsearch/seqwords.html
-%%PLIST_DOMSEARCH%%@dirrm share/EMBOSS/doc/html/embassy/domsearch
-%%PLIST_DOMSEARCH%%bin/seqnr
-%%PLIST_DOMSEARCH%%bin/seqsearch
-%%PLIST_DOMSEARCH%%bin/seqfraggle
-%%PLIST_DOMSEARCH%%bin/seqsort
-%%PLIST_DOMSEARCH%%bin/seqwords
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/libgen.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/matgen3d.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocplot.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/rocon.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggen.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/siggenlig.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscan.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/acd/sigscanlig.acd
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/libgen.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/matgen3d.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocon.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/rocplot.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggen.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/siggenlig.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscan.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/programs/text/sigscanlig.txt
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/index.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/libgen.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/matgen3d.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/rocon.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/rocplot.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/siggen.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/siggenlig.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/sigscan.html
-%%PLIST_SIGNATURE%%share/EMBOSS/doc/html/embassy/signature/sigscanlig.html
-%%PLIST_SIGNATURE%%@dirrm share/EMBOSS/doc/html/embassy/signature
-%%PLIST_SIGNATURE%%bin/libgen
-%%PLIST_SIGNATURE%%bin/matgen3d
-%%PLIST_SIGNATURE%%bin/rocplot
-%%PLIST_SIGNATURE%%bin/rocon
-%%PLIST_SIGNATURE%%bin/siggen
-%%PLIST_SIGNATURE%%bin/siggenlig
-%%PLIST_SIGNATURE%%bin/sigscan
-%%PLIST_SIGNATURE%%bin/sigscanlig
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/contacts.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/domainer.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/hetparse.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/interface.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbparse.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbplus.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/pdbtosp.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/acd/sites.acd
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/contacts.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/domainer.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/hetparse.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/interface.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbparse.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbplus.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/pdbtosp.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/programs/text/sites.txt
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/index.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/contacts.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/domainer.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/hetparse.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/interface.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbparse.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbplus.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/pdbtosp.html
-%%PLIST_STRUCTURE%%share/EMBOSS/doc/html/embassy/structure/sites.html
-%%PLIST_STRUCTURE%%@dirrm share/EMBOSS/doc/html/embassy/structure
-%%PLIST_STRUCTURE%%bin/contacts
-%%PLIST_STRUCTURE%%bin/domainer
-%%PLIST_STRUCTURE%%bin/hetparse
-%%PLIST_STRUCTURE%%bin/interface
-%%PLIST_STRUCTURE%%bin/pdbparse
-%%PLIST_STRUCTURE%%bin/pdbplus
-%%PLIST_STRUCTURE%%bin/pdbtosp
-%%PLIST_STRUCTURE%%bin/sites
-%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
-%%PLIST_EMNU%%share/EMBOSS/doc/programs/text/emnu.txt
-%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/index.html
-%%PLIST_EMNU%%share/EMBOSS/doc/html/embassy/emnu/emnu.html
-%%PLIST_EMNU%%@dirrm share/EMBOSS/doc/html/embassy/emnu
-%%PLIST_EMNU%%bin/emnu
-%%PLIST_ESIM4%%share/EMBOSS/acd/esim4.acd
-%%PLIST_ESIM4%%share/EMBOSS/doc/programs/text/esim4.txt
-%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/index.html
-%%PLIST_ESIM4%%share/EMBOSS/doc/html/embassy/esim4/esim4.html
-%%PLIST_ESIM4%%@dirrm share/EMBOSS/doc/html/embassy/esim4
-%%PLIST_ESIM4%%bin/esim4
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmcalibrate.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmconvert.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmemit.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmfetch.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmindex.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmbuild.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmalign.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmpfam.acd
-%%PLIST_HMMER%%share/EMBOSS/acd/ehmmsearch.acd
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmalign.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmbuild.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmcalibrate.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmconvert.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmemit.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmfetch.txt
-%%PLIST_HMMER%%share/EMBOSS/doc/programs/text/ehmmindex.txt
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-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/eiprscan.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/echlorop.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/enetnglyc.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/enetoglyc.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/enetphos.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/eprop.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/esignalp.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/etmhmm.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/programs/text/eyinoyang.txt
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/index.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/echlorop.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/elipop.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/enetnglyc.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/enetoglyc.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/enetphos.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/eprop.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/esignalp.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/etmhmm.html
-%%PLIST_CBSTOOLS%%share/EMBOSS/doc/html/embassy/cbstools/eyinoyang.html
-%%PLIST_CBSTOOLS%%@dirrm share/EMBOSS/doc/html/embassy/cbstools
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/echlorop.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/elipop.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetnglyc.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetoglyc.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/enetphos.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/eprop.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/esignalp.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/etmhmm.acd
-%%PLIST_CBSTOOLS%%share/EMBOSS/acd/eyinoyang.acd
-%%PLIST_CBSTOOLS%%bin/esignalp
-%%PLIST_CBSTOOLS%%bin/etmhmm
-%%PLIST_CBSTOOLS%%bin/enetnglyc
-%%PLIST_CBSTOOLS%%bin/enetoglyc
-%%PLIST_CBSTOOLS%%bin/enetphos
-%%PLIST_CBSTOOLS%%bin/eprop
-%%PLIST_CBSTOOLS%%bin/eyinoyang
-%%PLIST_CBSTOOLS%%bin/echlorop
-%%PLIST_CBSTOOLS%%bin/elipop
-@dirrm share/EMBOSS/doc/html/embassy
-@dirrmtry share/EMBOSS/doc/html
-@dirrmtry share/EMBOSS/doc
-@dirrmtry share/EMBOSS
-@dirrmtry share