diff options
| author | Kirill Ponomarev <krion@FreeBSD.org> | 2003-08-28 04:51:02 +0000 |
|---|---|---|
| committer | Kirill Ponomarev <krion@FreeBSD.org> | 2003-08-28 04:51:02 +0000 |
| commit | c101866e9f7d38e4afd34a8c6928e7689ae22b7c (patch) | |
| tree | fd08ba7636fc78e0480e6c76424a139ce1d4972a /biology/clustalw | |
| parent | * Update to 2.0.14 (diff) | |
- Add an end-of-string to each line of the input
when parsing the input files
PR: 56043
Submitted by: maintainer
Notes
Notes:
svn path=/head/; revision=87827
Diffstat (limited to 'biology/clustalw')
| -rw-r--r-- | biology/clustalw/files/patch-ac | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/biology/clustalw/files/patch-ac b/biology/clustalw/files/patch-ac index 57656a482e8b..2cf5496f3631 100644 --- a/biology/clustalw/files/patch-ac +++ b/biology/clustalw/files/patch-ac @@ -77,7 +77,7 @@ strcat(local_prompt," [%s]: "); fprintf(stdout,local_prompt,file_name); - gets(temp); -+ fgets(temp,FILENAMELEN+1,stdin); ++ fgets(temp,FILENAMELEN+1,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != EOS) strcpy(file_name,temp); } } @@ -86,7 +86,7 @@ strcat(local_prompt," [%s]: "); fprintf(stdout,local_prompt,file_name); - gets(temp); -+ fgets(temp,FILENAMELEN+1,stdin); ++ fgets(temp,FILENAMELEN+1,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != EOS) strcpy(file_name,temp); } @@ -95,7 +95,7 @@ fprintf(stdout,"\nUse the existing GUIDE TREE file, %s (y/n) ? [y]: ", tree_name); - gets(temp); -+ fgets(temp,MAXLINE,stdin); ++ fgets(temp,MAXLINE,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != 'n' && *temp != 'N') { strcpy(phylip_name,tree_name); use_tree = TRUE; @@ -104,7 +104,7 @@ fprintf(stdout,"\nEnter a name for the guide tree file [%s]: ", phylip_name); - gets(temp); -+ fgets(temp,MAXLINE,stdin); ++ fgets(temp,MAXLINE,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != EOS) strcpy(phylip_name,temp); } @@ -113,7 +113,7 @@ fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 1, %s (y/n) ? [y]: ", tree_name); - gets(temp); -+ fgets(temp,MAXLINE,stdin); ++ fgets(temp,MAXLINE,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != 'n' && *temp != 'N') { strcpy(p1_tree_name,tree_name); use_tree1 = TRUE; @@ -122,7 +122,7 @@ fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 2, %s (y/n) ? [y]: ", tree_name); - gets(temp); -+ fgets(temp,MAXLINE,stdin); ++ fgets(temp,MAXLINE,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != 'n' && *temp != 'N') { strcpy(p2_tree_name,tree_name); use_tree2 = TRUE; @@ -131,7 +131,7 @@ fprintf(stdout,"\nEnter a name for the parameter output file [%s]: ", parname); - gets(temp); -+ fgets(temp,FILENAMELEN+1,stdin); ++ fgets(temp,FILENAMELEN+1,stdin); if(*temp != EOS) temp[strlen(temp)-1]=EOS; if(*temp != EOS) strcpy(parname,temp); } |